Regulog UxuR2 - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glucuronate utilization; Galacturonate utilization
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 23 sites [see more]

Member of regulog collections

By taxonomy - Burkholderia
By TF family - GntR/Others
By pathway - Glucuronate utilization
By pathway - Galacturonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia cepacia AMMD	9	2
Burkholderia glumae BGR1	12	3
Burkholderia mallei ATCC 23344
Burkholderia phymatum STM815	17	5
Burkholderia pseudomallei K96243
Burkholderia sp. 383
Burkholderia vietnamiensis G4
Burkholderia xenovorans LB400

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
Bphy_5157	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	* Burkholderia phymatum STM815 Site: position = -117 score = 3.5801 sequence = TCGGTGGCCTGACCAAAAC Site: position = -98 score = 3.81893 sequence = CGATTGGCCTGACCGCAGC Gene: Bphy_5157: putative simple sugar transport system substrate-binding protein	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	putative simple sugar transport system substrate-binding protein
mglA	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_5158: ABC transporter related	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	ABC transporter related
Bphy_5159	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_5159: inner-membrane translocator	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	inner-membrane translocator
Bphy_5160	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_5160: inner-membrane translocator	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	inner-membrane translocator
COG3386	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_5161: gluconolactonase	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	gluconolactonase
Bphy_5162	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_5162: putative ABC transporter	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	putative ABC transporter

CRON 2.
bglu_2g15460	Burkholderia cepacia AMMD	* Burkholderia glumae BGR1 Site: position = -53 score = 4.49934 sequence = CCACTGGTCCGGCCAATTC Gene: bglu_2g15460: Short-chain dehydrogenase/reductase SDR	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Short-chain dehydrogenase/reductase SDR
mhpD	Burkholderia cepacia AMMD	Burkholderia glumae BGR1 Gene: bglu_2g15470: 5-carboxymethyl-2-hydroxymuconate delta-isomerase	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	5-carboxymethyl-2-hydroxymuconate delta-isomerase
uxuR2-2	Burkholderia cepacia AMMD	Burkholderia glumae BGR1 Gene: bglu_2g15480: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family

CRON 3.
uhpC	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	* Burkholderia phymatum STM815 Site: position = -261 score = 4.89704 sequence = AAAGTGGCTTGACCACTGG Site: position = -220 score = 4.54515 sequence = AATCTGGTAAGACCACATA Gene: Bphy_5154: Probable glucarate transporter	Burkholderia pseudomallei K96243	Burkholderia sp. 383 Gene: Bcep18194_B1357: Probable glucarate transporter	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Probable glucarate transporter
uxaA	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_5155: Altronate dehydratase	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Altronate dehydratase
idi	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_5156: L-lactate dehydrogenase (cytochrome)	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	L-lactate dehydrogenase (cytochrome)

CRON 4.
uxuR2	* Burkholderia cepacia AMMD Site: position = -84 score = 3.98273 sequence = GAAGTGACCATACCAATGG Site: position = -113 score = 5.37392 sequence = CATCTGGTCAAGCCAATTG Site: position = -156 score = 5.61569 sequence = CAACTGGCCAGTCCAGTTG Gene: Bamb_1229: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	* Burkholderia glumae BGR1 Site: position = -127 score = 4.53717 sequence = TAATGGGTCTTACCAATAG Site: position = -198 score = 4.30565 sequence = GCGCTGGTCAGTCCAATTG Site: position = -155 score = 5.04899 sequence = AATTTGGTCAAGCCAATAT Gene: bglu_2g18460: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	Burkholderia mallei ATCC 23344	* Burkholderia phymatum STM815 Site: position = -198 score = 5.04215 sequence = CGCGTGGTCAGTCCAATTG Site: position = -155 score = 4.82055 sequence = CGTTTGGTCAAGCCAGTAT Gene: Bphy_6346: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family

CRON 5.
uxuR3-3	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	* Burkholderia phymatum STM815 Site: position = -201 score = 4.54515 sequence = TATGTGGTCTTACCAGATT Site: position = -160 score = 4.89704 sequence = CCAGTGGTCAAGCCACTTT Gene: Bphy_5153: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family

CRON 6.
mglA	* Burkholderia cepacia AMMD Site: position = -129 score = 3.98273 sequence = CCATTGGTATGGTCACTTC Site: position = -100 score = 5.37392 sequence = CAATTGGCTTGACCAGATG Site: position = -57 score = 5.61569 sequence = CAACTGGACTGGCCAGTTG Gene: Bamb_1228: sugar ABC transporter, ATP-binding component	* Burkholderia glumae BGR1 Site: position = -122 score = 4.53717 sequence = CTATTGGTAAGACCCATTA Site: position = -94 score = 5.04899 sequence = ATATTGGCTTGACCAAATT Site: position = -51 score = 4.30565 sequence = CAATTGGACTGACCAGCGC Gene: bglu_2g18470: sugar ABC transporter, ATP-binding component	Burkholderia mallei ATCC 23344	* Burkholderia phymatum STM815 Site: position = -93 score = 4.82055 sequence = ATACTGGCTTGACCAAACG Site: position = -50 score = 5.04215 sequence = CAATTGGACTGACCACGCG Gene: Bphy_6345: sugar ABC transporter, ATP-binding component	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	sugar ABC transporter, ATP-binding component
Bamb_1227	Burkholderia cepacia AMMD Gene: Bamb_1227: sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Burkholderia glumae BGR1 Gene: bglu_2g18480: sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_6344: sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Bamb_1226	Burkholderia cepacia AMMD Gene: Bamb_1226: sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Burkholderia glumae BGR1 Gene: bglu_2g18490: sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_6343: sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
tas	Burkholderia cepacia AMMD Gene: Bamb_1225: L-fuco-beta-pyranose dehydrogenase	Burkholderia glumae BGR1 Gene: bglu_2g18500: L-fuco-beta-pyranose dehydrogenase	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_6342: L-fuco-beta-pyranose dehydrogenase	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	L-fuco-beta-pyranose dehydrogenase
COG3618	Burkholderia cepacia AMMD Gene: Bamb_1224: Amidohydrolase 2	Burkholderia glumae BGR1 Gene: bglu_2g18510: Amidohydrolase 2	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Amidohydrolase 2
tdh	Burkholderia cepacia AMMD Gene: Bamb_1223: Alcohol dehydrogenase GroES-like	Burkholderia glumae BGR1 Gene: bglu_2g18520: Alcohol dehydrogenase GroES-like	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_6341: Alcohol dehydrogenase GroES-like	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Alcohol dehydrogenase GroES-like
uxaB	Burkholderia cepacia AMMD Gene: Bamb_1222: Altronate oxidoreductase	Burkholderia glumae BGR1 Gene: bglu_2g18530: Altronate oxidoreductase	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_6340: Altronate oxidoreductase	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Altronate oxidoreductase
uxaA	Burkholderia cepacia AMMD Gene: Bamb_1221: Altronate hydrolase (EC 4.2.1.7)	Burkholderia glumae BGR1 Gene: bglu_2g18540: Altronate hydrolase (EC 4.2.1.7)	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Altronate hydrolase (EC 4.2.1.7)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog UxuR2 - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --