Regulog UxuR2 - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucuronate utilization; Galacturonate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - GntR/Others
- By pathway - Glucuronate utilization
- By pathway - Galacturonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia cepacia AMMD | 9 | 2 |
| Burkholderia glumae BGR1 | 12 | 3 |
| Burkholderia mallei ATCC 23344 | ||
| Burkholderia phymatum STM815 | 17 | 5 |
| Burkholderia pseudomallei K96243 | ||
| Burkholderia sp. 383 | ||
| Burkholderia vietnamiensis G4 | ||
| Burkholderia xenovorans LB400 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| Bphy_5157 |
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Burkholderia phymatum STM815 Site: position = -117 score = 3.5801 sequence = TCGGTGGCCTGACCAAAAC Site: position = -98 score = 3.81893 sequence = CGATTGGCCTGACCGCAGC Gene: Bphy_5157: putative simple sugar transport system substrate-binding protein |
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putative simple sugar transport system substrate-binding protein |
| mglA |
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Gene: Bphy_5158: ABC transporter related |
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ABC transporter related |
| Bphy_5159 |
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Gene: Bphy_5159: inner-membrane translocator |
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inner-membrane translocator |
| Bphy_5160 |
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Gene: Bphy_5160: inner-membrane translocator |
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inner-membrane translocator |
| COG3386 |
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Gene: Bphy_5161: gluconolactonase |
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gluconolactonase |
| Bphy_5162 |
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Gene: Bphy_5162: putative ABC transporter |
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putative ABC transporter |
| CRON 2. | |||||||||
| bglu_2g15460 |
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Burkholderia glumae BGR1 Site: position = -53 score = 4.49934 sequence = CCACTGGTCCGGCCAATTC Gene: bglu_2g15460: Short-chain dehydrogenase/reductase SDR |
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Short-chain dehydrogenase/reductase SDR |
| mhpD |
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Gene: bglu_2g15470: 5-carboxymethyl-2-hydroxymuconate delta-isomerase |
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5-carboxymethyl-2-hydroxymuconate delta-isomerase |
| uxuR2-2 |
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Gene: bglu_2g15480: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
| CRON 3. | |||||||||
| uhpC |
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Burkholderia phymatum STM815 Site: position = -261 score = 4.89704 sequence = AAAGTGGCTTGACCACTGG Site: position = -220 score = 4.54515 sequence = AATCTGGTAAGACCACATA Gene: Bphy_5154: Probable glucarate transporter |
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Gene: Bcep18194_B1357: Probable glucarate transporter |
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Probable glucarate transporter |
| uxaA |
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Gene: Bphy_5155: Altronate dehydratase |
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Altronate dehydratase |
| idi |
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Gene: Bphy_5156: L-lactate dehydrogenase (cytochrome) |
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L-lactate dehydrogenase (cytochrome) |
| CRON 4. | |||||||||
| uxuR2 |
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Burkholderia cepacia AMMD Site: position = -84 score = 3.98273 sequence = GAAGTGACCATACCAATGG Site: position = -113 score = 5.37392 sequence = CATCTGGTCAAGCCAATTG Site: position = -156 score = 5.61569 sequence = CAACTGGCCAGTCCAGTTG Gene: Bamb_1229: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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Burkholderia glumae BGR1 Site: position = -127 score = 4.53717 sequence = TAATGGGTCTTACCAATAG Site: position = -198 score = 4.30565 sequence = GCGCTGGTCAGTCCAATTG Site: position = -155 score = 5.04899 sequence = AATTTGGTCAAGCCAATAT Gene: bglu_2g18460: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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Burkholderia phymatum STM815 Site: position = -198 score = 5.04215 sequence = CGCGTGGTCAGTCCAATTG Site: position = -155 score = 4.82055 sequence = CGTTTGGTCAAGCCAGTAT Gene: Bphy_6346: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
| CRON 5. | |||||||||
| uxuR3-3 |
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Burkholderia phymatum STM815 Site: position = -201 score = 4.54515 sequence = TATGTGGTCTTACCAGATT Site: position = -160 score = 4.89704 sequence = CCAGTGGTCAAGCCACTTT Gene: Bphy_5153: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
| CRON 6. | |||||||||
| mglA |
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Burkholderia cepacia AMMD Site: position = -129 score = 3.98273 sequence = CCATTGGTATGGTCACTTC Site: position = -100 score = 5.37392 sequence = CAATTGGCTTGACCAGATG Site: position = -57 score = 5.61569 sequence = CAACTGGACTGGCCAGTTG Gene: Bamb_1228: sugar ABC transporter, ATP-binding component |
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Burkholderia glumae BGR1 Site: position = -122 score = 4.53717 sequence = CTATTGGTAAGACCCATTA Site: position = -94 score = 5.04899 sequence = ATATTGGCTTGACCAAATT Site: position = -51 score = 4.30565 sequence = CAATTGGACTGACCAGCGC Gene: bglu_2g18470: sugar ABC transporter, ATP-binding component |
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Burkholderia phymatum STM815 Site: position = -93 score = 4.82055 sequence = ATACTGGCTTGACCAAACG Site: position = -50 score = 5.04215 sequence = CAATTGGACTGACCACGCG Gene: Bphy_6345: sugar ABC transporter, ATP-binding component |
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sugar ABC transporter, ATP-binding component |
| Bamb_1227 |
Gene: Bamb_1227: sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1) |
Gene: bglu_2g18480: sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1) |
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Gene: Bphy_6344: sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1) |
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sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1) |
| Bamb_1226 |
Gene: Bamb_1226: sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) |
Gene: bglu_2g18490: sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) |
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Gene: Bphy_6343: sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) |
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sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) |
| tas |
Gene: Bamb_1225: L-fuco-beta-pyranose dehydrogenase |
Gene: bglu_2g18500: L-fuco-beta-pyranose dehydrogenase |
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Gene: Bphy_6342: L-fuco-beta-pyranose dehydrogenase |
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L-fuco-beta-pyranose dehydrogenase |
| COG3618 |
Gene: Bamb_1224: Amidohydrolase 2 |
Gene: bglu_2g18510: Amidohydrolase 2 |
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Amidohydrolase 2 |
| tdh |
Gene: Bamb_1223: Alcohol dehydrogenase GroES-like |
Gene: bglu_2g18520: Alcohol dehydrogenase GroES-like |
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Gene: Bphy_6341: Alcohol dehydrogenase GroES-like |
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Alcohol dehydrogenase GroES-like |
| uxaB |
Gene: Bamb_1222: Altronate oxidoreductase |
Gene: bglu_2g18530: Altronate oxidoreductase |
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Gene: Bphy_6340: Altronate oxidoreductase |
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Altronate oxidoreductase |
| uxaA |
Gene: Bamb_1221: Altronate hydrolase (EC 4.2.1.7) |
Gene: bglu_2g18540: Altronate hydrolase (EC 4.2.1.7) |
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Altronate hydrolase (EC 4.2.1.7) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |