# TF - NsrR: Bphy_0937
>Bphy_6194(hcp) Score=3.8 Pos=-67 [Burkholderia phymatum STM815]
CATGCGCAGACGATCCATA
>Bphy_0937(nsrR) Score=4.3 Pos=-70 [Burkholderia phymatum STM815]
GATGTGTTTTAAAAGCATG
>Bphy_0936(PF01152) Score=4.3 Pos=-156 [Burkholderia phymatum STM815]
CATGCTTTTAAAACACATC
# TF - HexR: Bphy_2581
>Bphy_2581(hexR) Score=4.8 Pos=-74 [Burkholderia phymatum STM815]
ATGTAGTTTTTGTACTT
>Bphy_2581(hexR) Score=5.2 Pos=-207 [Burkholderia phymatum STM815]
TAGTAGAAAAACTACAC
>Bphy_2580(edd) Score=4.8 Pos=-242 [Burkholderia phymatum STM815]
AAGTACAAAAACTACAT
>Bphy_2580(edd) Score=5.2 Pos=-109 [Burkholderia phymatum STM815]
GTGTAGTTTTTCTACTA
>Bphy_0627(zwf) Score=5.7 Pos=-87 [Burkholderia phymatum STM815]
TTGTAGTTAAACTACAA
# TF - NrdR: Bphy_2448
>Bphy_2639(nrdA) Score=5.1 Pos=-351 [Burkholderia phymatum STM815]
ACACTATACTTCGTGC
>Bphy_2639(nrdA) Score=4.9 Pos=-320 [Burkholderia phymatum STM815]
GCACAAGATGTAGTGT
# TF - Zur: Bphy_0488
>Bphy_0488(zur) Score=6 Pos=-59 [Burkholderia phymatum STM815]
TTCGAGATACGTTATATCATTGC
# TF - LldR: Bphy_5379
>Bphy_5379(lldR) Score=5.4 Pos=-29 [Burkholderia phymatum STM815]
AATTGGTTGGACCAATG
>Bphy_5378(lldE) Score=5.7 Pos=-121 [Burkholderia phymatum STM815]
CATTGGTCCAACCAATT
# TF - NorR: Bphy_4025
>Bphy_4025(norR) Score=5.2 Pos=26 [Burkholderia phymatum STM815]
AGAAGTCAAATTGACTGCA
>Bphy_4025(norR) Score=4.1 Pos=5 [Burkholderia phymatum STM815]
AAGGGTTAAAACGACTACA
>Bphy_4026(hmp) Score=5.2 Pos=-176 [Burkholderia phymatum STM815]
TGCAGTCAATTTGACTTCT
>Bphy_4026(hmp) Score=4.1 Pos=-155 [Burkholderia phymatum STM815]
TGTAGTCGTTTTAACCCTT
# TF - HutC: Bphy_5105, Bphy_5106, Bphy_1813
>Bphy_1814(hutH) Score=5.3 Pos=-217 [Burkholderia phymatum STM815]
GGACGTGTATATACAAGTTG
>Bphy_5100(hisJ2) Score=4.3 Pos=-218 [Burkholderia phymatum STM815]
GAACATGTCTAGTCAGCTGC
>Bphy_1814(hutH) Score=5.1 Pos=-27 [Burkholderia phymatum STM815]
GAAATTGTATAGACAGGAAC
>Bphy_1814(hutH) Score=5.7 Pos=-64 [Burkholderia phymatum STM815]
CGAGTTGTATATACAAGATG
>Bphy_5100(hisJ2) Score=5.1 Pos=-66 [Burkholderia phymatum STM815]
AGACTTGTCTATACATGTCC
# TF - IscR: Bphy_1459
>Bphy_1459(iscR) Score=7.3 Pos=-42 [Burkholderia phymatum STM815]
ATACTTGACCAAACTTGTCGAGAAT
>Bphy_1459(iscR) Score=7.1 Pos=-69 [Burkholderia phymatum STM815]
ATACTTGACTAAATCCGTCATGTAT
# TF - NagQ: Bphy_0292
>Bphy_0292(nagQ) Score=4.9 Pos=-81 [Burkholderia phymatum STM815]
TGGTATTATGGTGGTTAT
# TF - GlcC: Bphy_7453, Bphy_5644
>Bphy_7453(glcC) Score=5.8 Pos=-120 [Burkholderia phymatum STM815]
AGTGGTCGTACCAGT
>Bphy_5644(glcC) Score=5.7 Pos=-109 [Burkholderia phymatum STM815]
AGTGGTAATACCAGT
>Bphy_5644(glcC) Score=5.9 Pos=-1 [Burkholderia phymatum STM815]
AGTGGTCATACCAGT
>Bphy_6609(glcG) Score=4.9 Pos=-188 [Burkholderia phymatum STM815]
ACTGGTATGACCAGT
>Bphy_7454(glcD) Score=4.9 Pos=-113 [Burkholderia phymatum STM815]
ACTGGTACGACCACT
>Bphy_7454(glcD) Score=4.6 Pos=-220 [Burkholderia phymatum STM815]
ACTGGTATGACCACT
>Bphy_5643(glcD) Score=4.6 Pos=-234 [Burkholderia phymatum STM815]
ACTGGTATGACCACT
>Bphy_5643(glcD) Score=4.8 Pos=-126 [Burkholderia phymatum STM815]
ACTGGTATTACCACT
>Bphy_7453(glcC) Score=5.9 Pos=-13 [Burkholderia phymatum STM815]
AGTGGTCATACCAGT
# TF - NtrC: Bphy_1479
>Bphy_5658(narK) Score=4.6 Pos=-272 [Burkholderia phymatum STM815]
TGCACCAGCCCAGTGCC
>Bphy_1481(glnA) Score=4.4 Pos=-273 [Burkholderia phymatum STM815]
TGCCCTGTGATGGTGCA
# TF - RbsR: Bphy_1234
>Bphy_1237(rbsB) Score=6.6 Pos=-65 [Burkholderia phymatum STM815]
GCTCGCAAACGTTTGCGCAC
# TF - ModE: Bphy_4402
>Bphy_4405(modA) Score=5.3 Pos=-67 [Burkholderia phymatum STM815]
CGCTGTAACCAGACATATATTACG
# TF - LexA: Bphy_1630
>Bphy_0767(PF04055) Score=6.3 Pos=-25 [Burkholderia phymatum STM815]
CACTGTATATTTGTACAGTA
>Bphy_4157(PF10616) Score=6.2 Pos=-44 [Burkholderia phymatum STM815]
TACTGTATGTTTGTACAGTA
>Bphy_1549(uvrA) Score=6.3 Pos=-73 [Burkholderia phymatum STM815]
AACTGTATAAACATACAGTA
>Bphy_1630(lexA) Score=5.7 Pos=-45 [Burkholderia phymatum STM815]
TACTGTATAAAAATACAGGC
>Bphy_1630(lexA) Score=5.4 Pos=-25 [Burkholderia phymatum STM815]
ACCTGTCTATCCATACAGTG
>Bphy_0440(recA) Score=6 Pos=-121 [Burkholderia phymatum STM815]
TACTGTTTTTTTATACAGTG
>Bphy_1972(imuA) Score=6.4 Pos=-34 [Burkholderia phymatum STM815]
TACTGTATAAATATACAGTT
>Bphy_5308(PF08774) Score=5.6 Pos=-37 [Burkholderia phymatum STM815]
GGCTGTATAAATATACAGTT
# TF - LiuR: Bphy_0181
>Bphy_3025(aacS) Score=5.4 Pos=-153 [Burkholderia phymatum STM815]
CTTGACGTTTACGGAAAG
>Bphy_0181(liuR) Score=6 Pos=-101 [Burkholderia phymatum STM815]
GTTGACGATAACGTAAAC
>Bphy_3562(liuA) Score=5.6 Pos=-187 [Burkholderia phymatum STM815]
ATTGACGCATACGTCAAT
# TF - PsrA: Bphy_1699
>Bphy_0828(fabH) Score=6 Pos=-201 [Burkholderia phymatum STM815]
AATCAAACGCGGGTATGATG
>Bphy_1699(psrA) Score=4.3 Pos=-100 [Burkholderia phymatum STM815]
AAAAGAACGCACGTTTCAAA
# TF - RutR: Bphy_1537
>Bphy_1537(rutR) Score=6.9 Pos=-216 [Burkholderia phymatum STM815]
TCCTGTCCGAATGGACAGGT
>Bphy_1536(pydC) Score=6.5 Pos=-200 [Burkholderia phymatum STM815]
ACCTGTCCATTCGGACAGGA
# TF - FadP: Bphy_0384
>Bphy_1028(fadB) Score=5.3 Pos=-131 [Burkholderia phymatum STM815]
TTGAACGATCGTGCTT
>Bphy_0384(fadP) Score=5.2 Pos=-50 [Burkholderia phymatum STM815]
TGGTACGACCGTTCGA
>Bphy_0762(etfB) Score=5.5 Pos=-139 [Burkholderia phymatum STM815]
TAGCACGACCGTTCGC
>Bphy_0157(nppD) Score=5.6 Pos=-117 [Burkholderia phymatum STM815]
TCGAACGATCGTTCTT
>Bphy_1567(etfD) Score=5.7 Pos=-102 [Burkholderia phymatum STM815]
TAGAACGATCGTGCTA
>Bphy_0524(fadD2) Score=5.4 Pos=-112 [Burkholderia phymatum STM815]
TGGCACGATCGTTCGA
>Bphy_1993 Score=4.9 Pos=-60 [Burkholderia phymatum STM815]
GCGAACGACCGTTCAT
>Bphy_2685(fadD1) Score=5.3 Pos=-37 [Burkholderia phymatum STM815]
TAGCACGACCATTCGA
# TF - LiuQ: Bphy_3563
>Bphy_3562(liuA) Score=5.6 Pos=-210 [Burkholderia phymatum STM815]
TTGAGTGACACTCAA
>Bphy_3563(liuQ) Score=5.6 Pos=-104 [Burkholderia phymatum STM815]
TTGAGTGTCACTCAA
# TF - VanR: Bphy_6983
>Bphy_6982 Score=4.9 Pos=-111 [Burkholderia phymatum STM815]
TGTATACA
>Bphy_6982 Score=4.1 Pos=-48 [Burkholderia phymatum STM815]
TGCATACA
# TF - PhnF: Bphy_3772
>Bphy_4623(phnC) Score=4.7 Pos=-111 [Burkholderia phymatum STM815]
TGCAAAGATATAGTCGTCTAGA
>Bphy_3773(phnG) Score=6.8 Pos=-90 [Burkholderia phymatum STM815]
TACAAACGTCTAGACGTTTAGA
>Bphy_3772(phnF) Score=6.8 Pos=-128 [Burkholderia phymatum STM815]
TCTAAACGTCTAGACGTTTGTA
>Bphy_4623(phnC) Score=4.9 Pos=-103 [Burkholderia phymatum STM815]
TATAGTCGTCTAGATGTTGCGA
# TF - PaaR: Bphy_2863
>Bphy_2689(paaZ) Score=6.6 Pos=-68 [Burkholderia phymatum STM815]
ACCAACCAACCGGTCGGTCAAT
>Bphy_2688(paaG) Score=6.9 Pos=-90 [Burkholderia phymatum STM815]
ATTGACCGACCGGTTGGTTGGT
>Bphy_2857(paaA) Score=6.8 Pos=-66 [Burkholderia phymatum STM815]
ATTAACCGACCGGACGGTTGGT
# RNA - FMN
>Bphy_0417(ribB) Score=99.6 Pos=-390 [Burkholderia phymatum STM815]
TACGTCTTCAGGGCGGGGTGAAATTCCCCACCGGCGGTATGCAGGCGGGGCGCATCATCGCGTGCGAGTCTGCGAGCCCGCGAGCGCCTGCGTTGCAGTTCGGGATGCAGGGTCAGCAGATCTGGTGAGAGGCCAGAGCCGACGGTTAGAGTCCGGATGGAAGAAGATGTGCAG
# RNA - TPP
>Bphy_2774(thiO) Score=63.5 Pos=-343 [Burkholderia phymatum STM815]
CCAGACGAAACAGGGGTGCTTCGTGCGCGGGCAGTCGTCGCGGCGAGGCTGAGAGAGACCCTTCGCACCCGATCCGGGTAATACCGGCGCGGGAAGTTTTCGGGAAGTTTTT
>Bphy_1518(thiC) Score=51.3 Pos=-231 [Burkholderia phymatum STM815]
TGCTAACGCGGGGGTCCTGCGTTGTGCGTCGCCGGGAAGCGAGACGGCACTGCACGGCGTGGGTGAGAAATACCCTTTGAACCTGATCTGGATAATGCCAGCGCAGGGAAGCGTTCGGGCTCGCCGCTT
# RNA - Cobalamin
>Bphy_3154(cysG) Score=56.1 Pos=-444 [Burkholderia phymatum STM815]
ATCGTATGCGCGCGTCTGGTGCCGTGCCTGGGTTCGCTTGCACGGTTAAACGGGAAACAGGGAAGCGCCTCATTTGCACGGCACGCGTCGTGCGGCGAACGAAGCGCTCAGCCTGTGCTGTCCCCGCAACGGTCACGCGGCGAGTGGAAGAGCAACTTCCGCGCAGTGCGTTCAAGGCCACTGCCTGCATCATGCGGGTGGGAAGGCGAGCGCGATGAGCCGCCAGCCCGGATACCGGCCAGATGCAAGGGGGCGACGAG
>Bphy_3143(cobG) Score=40.2 Pos=-266 [Burkholderia phymatum STM815]
CATAATACCCGTTCGCCGGTGCCTTTCGGGGCCTAAGAGGGAACACGCATCATGGCGATGACCGTGACTACCCCCGCAACTGTATGCAGCGAGGCTAGCGCTTTTCATGGACCACAGCAGGCGTTATAGCGCTAGCTCTGGTCGACAGCTCATAAAACCTGCCGGCTAATAGTTCGTGCCAGC
>Bphy_3437(bglu_2g19320) Score=34.9 Pos=-191 [Burkholderia phymatum STM815]
GCAGTTTAGCGCGTAGAATAGTCGCCACTCGAAGCGCGGAAGCCGGTGCAAGCCCGGCGCGGTCGCGCCACTGTAATCGGCAGTACATGCGTACACCAACATGCGGTACACAAGCCGGAAGCCAGACCCAAGCTTCGACTTCCCTTATCAAT
>Bphy_2213(btuB) Score=41.5 Pos=-319 [Burkholderia phymatum STM815]
TCTACACTTGCGGCACTTTGGTGCCCGCGCGCGGTATCGTCCCGCGCGCAGTTAAACGGGAAGCAGGAAGCGAGTCCGCCCGGATGAGCCAACCTGCGCTGTCCTCGCAACGGTACAACGATGCATGTCGATCCATCGCAATCGTCGAGCCGATCATCGGCCGATGCCGTGCGACGAACGCCACTGCGCATGACGCGTGGGAAGGCGGGTCGGCCAGTCGCCAGCCCGGATACCGGCCAGAGTCGGAGCGCATGAC
>Bphy_3153(cobW) Score=30.5 Pos=-466 [Burkholderia phymatum STM815]
CTAAACTCGCACGCACTCTGGTGCTCGCGCGCGCTTTCTGCTCGCGCAGTTAAACGGGAAATAGCAGGCCCCTCGTGTTGTCTCGAGTCGTCACAGGGCCAAGCTGTGCTGCTCCCCGCAACGGTAGGTGAAGGCATCGCGAAGTCGATGCGGAGCCGTCTCGCTGCATGTGTGTCCAACAGCGGCCCATGCAGATCATCCACTGCGCGAAAACGCTCGCGCGGGAAGGAGAGGCGGCGCTTTCATCAGCCCGGATACCGGCCCGAGAAAACGACGCAACG
# RNA - SAH_riboswitch
>Bphy_2918(ahcY) Score=41.6 Pos=-146 [Burkholderia phymatum STM815]
GTCTTCGAGGAGCGTTGCGACGGGTTCGGCCCGCCAGGCTCGAAGGCTTTCAA
# RNA - ykkC-yxkD
>Bphy_3974(uctB) Score=77.3 Pos=-126 [Burkholderia phymatum STM815]
AAATGGACGACTAGGGTTCCGGTCTGCACGAATGCAAACAGAGGCGTTCGGTGCGCGACGCTGGTCCGAGAGTTGTCGACCTCGCACGAGGTTACACGGCGGGATAAAAGCCCGGGAGAGAA
# RNA - Glycine
>Bphy_3003(gcvT) Score=33.1 Pos=-221 [Burkholderia phymatum STM815]
TTTCGCACTCTGGAGAGCGGCAGTAGCGCCCGTGCAGAATGCGCGCGCAAGCTGCCCACCGAAGGGGCGCGCGCCACGCCAGCCAGCACTCGCTGACGGCAGCGCAATCTCTCAGGTATCGAGGACAGAGGGGGCATGCA
>Bphy_3003(gcvT) Score=44.3 Pos=-380 [Burkholderia phymatum STM815]
CGCACGCGTCGGGAGAGCGCGCCGTTTGCTGTCGTCCGTAGTCACAGCATGCAGCGCCGCCGAAGGGGCACACCCGCAAACTCTCAGGCAAAAGGACCGAACGCGTCGAAAA
# RNA - yybP-ykoY
>Bphy_0688(COG2119) Score=34.9 Pos=-238 [Burkholderia phymatum STM815]
TCCGCCGCTCATTGGGGAGTAGCCGCCCCGCATCATGCCCGCGCAATGGCCACGCTCACGGCCGGCGAGCGCAGCGCGTGTGATTCGCGGGGGCGCCTGTCAACAGACTTGACCGTTGTGGTCATGGCAGACGCAGCCTCTGGCCTGGCGAGACCGATGATCCACTA
# RNA - mini-ykkC
>Bphy_2052(ykkC) Score=44.7 Pos=-68 [Burkholderia phymatum STM815]
TCGGCAAGGACGGCCTTGCTGCATCCGCTTTCAACGGGGACGGCCCCA
>Bphy_3979(ucaA) Score=41.8 Pos=-68 [Burkholderia phymatum STM815]
GCCGTGGACGACCTCGGCATGCATGACCACGTGGCGGGACGACCCGCCC
# RNA - sucA
>Bphy_1721(sucA) Score=79.9 Pos=-88 [Burkholderia phymatum STM815]
CGCGCAATCCGCTAAACGGTCAGGCCGTGTCGCGGAAGGTTCAGTAACCCGCTATTTCTCGAGAAGCTCGAAGAAAGGTGAGCG
# TF - YrdX: Bphy_4559
>Bphy_4560(PF02635) Score=7 Pos=-127 [Burkholderia phymatum STM815]
ATTGATCG---GTTGATTG
>Bphy_4560(PF02635) Score=5.4 Pos=-90 [Burkholderia phymatum STM815]
TTGGCATA---GTTGCGTT
# TF - HrcA: Bphy_2503
>Bphy_0301(rpoH) Score=7.3 Pos=-82 [Burkholderia phymatum STM815]
TTAGCACTCGGTAGATGAGAGTGCTAA
>Bphy_2334(groS) Score=7.6 Pos=-100 [Burkholderia phymatum STM815]
TTAGCACTCACCGCACGAGAGTGCTAA
# TF - GntR: Bphy_5547
>Bphy_5548(gntK) Score=6.7 Pos=-35 [Burkholderia phymatum STM815]
CTGAGACAGCGCTGTCTCGG
>Bphy_5548(gntK) Score=6.2 Pos=-137 [Burkholderia phymatum STM815]
TTAGGATAGCGCTGTCTCAA
>Bphy_5547(gntR) Score=6.2 Pos=-27 [Burkholderia phymatum STM815]
TTGAGACAGCGCTATCCTAA
>Bphy_5547(gntR) Score=6.7 Pos=-129 [Burkholderia phymatum STM815]
CCGAGACAGCGCTGTCTCAG
# TF - NmlR: Bphy_0943
>Bphy_0943(nmlR) Score=5.9 Pos=-37 [Burkholderia phymatum STM815]
CTTAGAGTTCACTCGAAG
# TF - CueR: Bphy_1967
>Bphy_1968(copZ) Score=6.2 Pos=-89 [Burkholderia phymatum STM815]
ACCTTCCCACTGTGGGAAGGT
>Bphy_1967(cueR) Score=6.2 Pos=-64 [Burkholderia phymatum STM815]
ACCTTCCCACAGTGGGAAGGT
# TF - Bphy_4590: Bphy_4590
>Bphy_4590(Bphy_4590) Score=6.2 Pos=-218 [Burkholderia phymatum STM815]
CCGTGTTAGCGCTTACATTT
>Bphy_4591(Bphy_4591) Score=6.4 Pos=-134 [Burkholderia phymatum STM815]
AGATGTAAGCGCTAACATTA
# TF - BglR: Bphy_5439
>Bphy_5434(bglB) Score=7.1 Pos=-86 [Burkholderia phymatum STM815]
ATGTGGAAGCGCTTCCACTC
# TF - PtxS: Bphy_1250
>Bphy_1254(kguE) Score=5.8 Pos=-52 [Burkholderia phymatum STM815]
CTTTGGAACCGATTCCAAAG
# TF - Bphy_6994: Bphy_6994
>Bphy_6992(Bphy_6992) Score=6.6 Pos=-101 [Burkholderia phymatum STM815]
TTACTGTATCGATACACTAA
# TF - Bphy_2245: Bphy_2245
>Bphy_2245(Bphy_2245) Score=7.4 Pos=-107 [Burkholderia phymatum STM815]
GAATGTAATCGATTACATTT
# TF - ScrR: Bphy_6046
>Bphy_6046(scrR) Score=5.8 Pos=-111 [Burkholderia phymatum STM815]
AGGCCAAACCGGTTTTGAAG
>Bphy_6046(scrR) Score=6 Pos=-133 [Burkholderia phymatum STM815]
TTTCCAAATCGGTTTGGATC
>Bphy_6047(sacB) Score=5.8 Pos=-73 [Burkholderia phymatum STM815]
CTTCAAAACCGGTTTGGCCT
>Bphy_6047(sacB) Score=6 Pos=-51 [Burkholderia phymatum STM815]
GATCCAAACCGATTTGGAAA
# TF - GabR: Bphy_4320, Bphy_4852, Bphy_4619
>Bphy_4321(gbtA) Score=11.9 Pos=-161 [Burkholderia phymatum STM815]
GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT
>Bphy_4618(gabT) Score=11.9 Pos=-114 [Burkholderia phymatum STM815]
TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA
>Bphy_4851(gabT) Score=10.8 Pos=-143 [Burkholderia phymatum STM815]
ATGGCTC-(16)-GTGGCTC-(9)-GAGCCGT
# TF - BPSL1304: Bphy_1500
>Bphy_1500(BPSL1304) Score=5.4 Pos=-68 [Burkholderia phymatum STM815]
CTGCGAAAACGTTTACAACA
# TF - FdsR: Bphy_0730
>Bphy_0729(fdsG) Score=5 Pos=-134 [Burkholderia phymatum STM815]
ATATGCTGTTGTAGTTCCTAT
>Bphy_0729(fdsG) Score=5.3 Pos=-44 [Burkholderia phymatum STM815]
TTATGAATAACAAGTGCATAT
>Bphy_0730(fdsR) Score=5 Pos=-21 [Burkholderia phymatum STM815]
ATAGGAACTACAACAGCATAT
>Bphy_0730(fdsR) Score=5.3 Pos=-111 [Burkholderia phymatum STM815]
ATATGCACTTGTTATTCATAA
# TF - PhnR2: Bphy_5069
>Bphy_5065(phnS2) Score=4.4 Pos=-125 [Burkholderia phymatum STM815]
GTTGTCGGCAAT
>Bphy_5064 Score=4.4 Pos=-231 [Burkholderia phymatum STM815]
ATTGCCGACAAC
# TF - UraR: Bphy_1303
>Bphy_1303(uraR) Score=5.2 Pos=-56 [Burkholderia phymatum STM815]
ATTGTTGACAAT
>Bphy_1303(uraR) Score=5.2 Pos=-198 [Burkholderia phymatum STM815]
TTTGTCGACAAA
# TF - UreR: Bphy_2597
>Bphy_2597(ureR) Score=5 Pos=-34 [Burkholderia phymatum STM815]
ACTGGTCAGACCGCA
>Bphy_2597(ureR) Score=5.7 Pos=-195 [Burkholderia phymatum STM815]
ACCGGTCTGACCAGT
>Bphy_2597(ureR) Score=5.1 Pos=-112 [Burkholderia phymatum STM815]
GCTGGTCTGACCGGC
>Bphy_2596(dctA) Score=5 Pos=-232 [Burkholderia phymatum STM815]
TGCGGTCTGACCAGT
>Bphy_2596(dctA) Score=5.1 Pos=-154 [Burkholderia phymatum STM815]
GCCGGTCAGACCAGC
>Bphy_2596(dctA) Score=5.7 Pos=-71 [Burkholderia phymatum STM815]
ACTGGTCAGACCGGT
# TF - MetR: Bphy_5471
>Bphy_5471(metR) Score=5.3 Pos=-45 [Burkholderia phymatum STM815]
ATGGATTAATTTCAT
>Bphy_5470(metE) Score=5.3 Pos=-81 [Burkholderia phymatum STM815]
ATGAAATTAATCCAT
# TF - EutR: Bphy_3865
>Bphy_3865(eutR) Score=5.4 Pos=-83 [Burkholderia phymatum STM815]
ATTGCTCTAGGACAAT
>Bphy_3866(ehuB) Score=5.4 Pos=-172 [Burkholderia phymatum STM815]
ATTGTCCTAGAGCAAT
>Bphy_3864(eutB) Score=5.6 Pos=-124 [Burkholderia phymatum STM815]
AATGTACCAGGACAAT
# TF - TauR: Bphy_6226
>Bphy_6205(xsc) Score=8.8 Pos=-373 [Burkholderia phymatum STM815]
CTGGCCCAGG-------------CTGGTGCTAC
>Bphy_6225(tauX) Score=9.3 Pos=-130 [Burkholderia phymatum STM815]
CTGGCCCAAG-------------CTGGAACTAC
>Bphy_6203(tauC) Score=7.7 Pos=-269 [Burkholderia phymatum STM815]
CTGGATCCAT-------------CTGGTACTAC
# TF - PdxW: Bphy_4112
>Bphy_4081(PF00583) Score=10.1 Pos=-107 [Burkholderia phymatum STM815]
GCTGGCTCCAT-(13)-TCTGGTTCTTA-(2)-AGCGCGCGACG
>Bphy_4113(PF00583) Score=11.7 Pos=-99 [Burkholderia phymatum STM815]
CGTGGCTCCAT-(13)-GGTGGAGCTAA-(2)-ATGGTGCCACA
# TF - BPSL1086: Bphy_2114
>Bphy_4474(PF01810) Score=17.7 Pos=-96 [Burkholderia phymatum STM815]
GCTCCGTACCG-(13)-AATCTGTATAG-(0)-GTACTGTACCG-(8)-CGCTACACTGT
# TF - PdxQ3: Bphy_5571
>Bphy_5570(PF01965) Score=12.4 Pos=-82 [Burkholderia phymatum STM815]
GATGTATT-(1)-ATGACAAT-(6)-ATTGTAAT
# TF - Bamb_6386: Bphy_6987, Bphy_3552
>Bphy_6988(COG1917) Score=10.3 Pos=-90 [Burkholderia phymatum STM815]
TCTTGGTACA--------------TCCTGGTGCT
>Bphy_3553(COG1917) Score=10.3 Pos=-89 [Burkholderia phymatum STM815]
TCTTGGTACA--------------TCCTGGTGCT
>Bphy_6986(PF01966) Score=5.8 Pos=-114 [Burkholderia phymatum STM815]
CCCAGGTGCA--------------TTCCGGCGCG
>Bphy_6986(PF01966) Score=6.7 Pos=-176 [Burkholderia phymatum STM815]
CGATAGTACA--------------TCTTGGGCCT
>Bphy_3551(PF01966) Score=6.9 Pos=-175 [Burkholderia phymatum STM815]
CGATAGTACA--------------TCTTGGGTCT
# TF - SdhR: Bphy_4360
>Bphy_0565(icd) Score=6.2 Pos=-262 [Burkholderia phymatum STM815]
GATCCTCTCTTATATAAGACATAGGA
>Bphy_4359 Score=7.6 Pos=-39 [Burkholderia phymatum STM815]
AGTTATGTCTTATATAAGACATAAGA
>Bphy_4360(sdhR) Score=7.6 Pos=-78 [Burkholderia phymatum STM815]
TCTTATGTCTTATATAAGACATAACT
>Bphy_5855(acnB) Score=6.1 Pos=-137 [Burkholderia phymatum STM815]
AACCAACTCTTATATAAGACATAAGA
# TF - PdxW2: Bphy_5851
>Bphy_5850(pdxO2) Score=11.4 Pos=-110 [Burkholderia phymatum STM815]
TCTGGTTC-(16)-ACTGGATC-(8)-AAACCAGT
# TF - BPSS1200: Bphy_4510
>Bphy_4060(PF02627) Score=13.2 Pos=-107 [Burkholderia phymatum STM815]
AGTGGTCAC-(15)-ATTGGCCAT-(5)-ATGGCCAGT
# TF - OapR: Bphy_4469
>Bphy_4468(oapT) Score=14.5 Pos=-116 [Burkholderia phymatum STM815]
ACCAGCACAGTC-(11)-ACCAGCACAGTT-(16)-AACTGTTTATGT
# TF - BPSS0970: Bphy_4744
>Bphy_4743(fdhA2) Score=8.7 Pos=-97 [Burkholderia phymatum STM815]
AACTGTACTCTTTTT----------TTGTGTACACGCCGG
# TF - YdcR: Bphy_6904, Bphy_6902, Bphy_3581
>Bphy_6903(COG4943) Score=7.6 Pos=-158 [Burkholderia phymatum STM815]
ATCTGATACGGCGTT---------ATCTGCTGCTATTGC
>Bphy_5829(cysI) Score=7 Pos=-170 [Burkholderia phymatum STM815]
ATCTGCTGCCGTCAT---------ATCTGCGTCTTGCCG
>Bphy_3580(PF11174) Score=7.8 Pos=-108 [Burkholderia phymatum STM815]
CGCTGCTGCGCTGGA---------ATCTGCTTCTTACGC
>Bphy_6906 Score=8.6 Pos=-126 [Burkholderia phymatum STM815]
ATCTGATACGCATGT---------AACTGCTACTCGTTT
# TF - Bphy_4252: Bphy_4252
>Bphy_4252(Bphy_4252) Score=5.9 Pos=-125 [Burkholderia phymatum STM815]
ATTTTGCATGCAAAAA
>Bphy_4252(Bphy_4252) Score=5.8 Pos=-7 [Burkholderia phymatum STM815]
TTTTTGTATGCAAAAT
>Bphy_4253(sgaA) Score=5.8 Pos=-154 [Burkholderia phymatum STM815]
ATTTTGCATACAAAAA
>Bphy_4253(sgaA) Score=5.9 Pos=-36 [Burkholderia phymatum STM815]
TTTTTGCATGCAAAAT
# TF - Bamb_3558: Bphy_3121
>Bphy_3122 Score=19 Pos=-171 [Burkholderia phymatum STM815]
CCAGATACAGCCGA-(11)-AGCGGAACAGAGCA-(17)-AGCGGTGCAGATTC-(9)-GAGTCTGTTGTGTT
# TF - Bcep1808_4966: Bphy_0548
>Bphy_0549(PF11142) Score=19.4 Pos=-119 [Burkholderia phymatum STM815]
AACTGTCAGG-(8)-CTGCACAGTT-(7)-AACTGTTCAG-(0)-TACTGTGCAT
# TF - UxuR2: Bphy_6346, Bphy_5153
>Bphy_6345(mglA) Score=4.8 Pos=-93 [Burkholderia phymatum STM815]
ATACTGGCTTGACCAAACG
>Bphy_6345(mglA) Score=5 Pos=-50 [Burkholderia phymatum STM815]
CAATTGGACTGACCACGCG
>Bphy_6346(uxuR2) Score=5 Pos=-198 [Burkholderia phymatum STM815]
CGCGTGGTCAGTCCAATTG
>Bphy_6346(uxuR2) Score=4.8 Pos=-155 [Burkholderia phymatum STM815]
CGTTTGGTCAAGCCAGTAT
>Bphy_5153(uxuR3-3) Score=4.5 Pos=-201 [Burkholderia phymatum STM815]
TATGTGGTCTTACCAGATT
>Bphy_5153(uxuR3-3) Score=4.9 Pos=-160 [Burkholderia phymatum STM815]
CCAGTGGTCAAGCCACTTT
>Bphy_5154(uhpC) Score=4.9 Pos=-261 [Burkholderia phymatum STM815]
AAAGTGGCTTGACCACTGG
>Bphy_5154(uhpC) Score=4.5 Pos=-220 [Burkholderia phymatum STM815]
AATCTGGTAAGACCACATA
>Bphy_5157 Score=3.6 Pos=-117 [Burkholderia phymatum STM815]
TCGGTGGCCTGACCAAAAC
>Bphy_5157 Score=3.8 Pos=-98 [Burkholderia phymatum STM815]
CGATTGGCCTGACCGCAGC
# TF - GguR: Bphy_6525
>Bphy_6527(garL) Score=4.5 Pos=-77 [Burkholderia phymatum STM815]
CAGACATCCTATGACAT
>Bphy_6527(garL) Score=4.5 Pos=-200 [Burkholderia phymatum STM815]
CGGTCATCGTACAACAA
>Bphy_6525(gguR) Score=4.7 Pos=-51 [Burkholderia phymatum STM815]
GCGTTGTCGGACAACGT
>Bphy_6382(garD) Score=4.8 Pos=-67 [Burkholderia phymatum STM815]
ATGTTGTACGATGACGC
>Bphy_6596(garP) Score=4.9 Pos=-92 [Burkholderia phymatum STM815]
ATGTCGTCAGACAACCT
>Bphy_6596(garP) Score=5 Pos=-223 [Burkholderia phymatum STM815]
ACGTCGTCGTACAACTG
>Bphy_6526(kgsD) Score=4.5 Pos=-48 [Burkholderia phymatum STM815]
TTGTTGTACGATGACCG
>Bphy_6526(kgsD) Score=4.5 Pos=-171 [Burkholderia phymatum STM815]
ATGTCATAGGATGTCTG
# TF - UdhR: Bphy_5674
>Bphy_5673(udh) Score=6.6 Pos=-41 [Burkholderia phymatum STM815]
TCGGAAAACGTTTTCCTA
>Bphy_5674(udhR) Score=6.6 Pos=-106 [Burkholderia phymatum STM815]
TAGGAAAACGTTTTCCGA
>Bphy_5675(exuT) Score=6.6 Pos=-137 [Burkholderia phymatum STM815]
TAGAAAAACGTTTTCCAA