Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Geobacillus kaustophilus HTA426

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AraR Arabinose Arabinose utilization 3 3
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 6 7
TF AseR Arsenite Arsenic resistance 2 4
TF BceR BceS, sensor histidine kinase (bacitracin) Bacitracin resistance 1 1
TF BirA Biotin Biotin biosynthesis 5 5
TF BkdR Branched-chain amino acid degradation 2 2
TF CcpA HPr, phosphocarrier protein Carbon catabolism 57 17
TF CcpN Gluconeogenesis 2 3
TF CggR Fructose-1,6-diphosphate Glycolysis 1 2
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 77 19
TF CsoR Copper ion, (Cu+) Copper resistance 2 1
TF CtsR Heat shock Heat shock response 5 4
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 10 3
TF CysL Sulfate; Sulfite; Thiosulfate Sulfite reduction 5 4
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 2 2
TF DctR C4-dicarboxylate transport 1 1
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 8 6
TF FapR Malonyl-CoA Fatty acid biosynthesis 6 3
TF Fnr Oxygen Anaerobic metabolism 6 2
TF FruR Fructose-6-phosphate Fructose utilization 1 2
TF Fur Iron ion, (Fe2+) Iron homeostasis 8 5
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 4 5
TF GltC Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 2
TF GmuR Glucomannan utilization 1 1
TF GntR2 D-gluconate Gluconate utilization 3 3
TF HisR Histidine Histidine biosynthesis 3 1
TF HrcA Heat shock Heat shock response 2 2
TF IolR1 Inositol utilization 3 3
TF IolR2 Inositol utilization 3 2
TF KipR Sporulation 2 1
TF LexA DNA damage SOS response 18 13
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF LutR L-lactate Lactate utilization 3 2
TF MalR2 Maltose Maltose utilization; Maltodextrin utilization 3 7
TF MhqR 2-Methylhydroquinone and catechol resistance 3 1
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 1
TF MtlR MtlA, mannitol-specific enzyme IICB PTS component; HPr, phosphocarrier protein Mannitol utilization 2 2
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 1 1
TF NiaR Niacin NAD biosynthesis 3 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NsrR Nitric oxide Nitrosative stress response 3 4
TF OhrR tert-Butyl hydroperoxide; Diamide; Cumene hydroperoxide; Hydrogen peroxide Peroxide stress response 2 1
TF PdxQ Pyridoxine/pyridoxal homeostasis 1 1
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 10 10
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 8 8
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 6 3
TF RocR Ornithine; L-citrulline Arginine degradation; Ornithine degradation 2 5
TF SdpR SdpI, signal transduction protein Toxin-antitoxin system 1 1
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 31 16
TF TreR Trehalose-6-phosphate Trehalose utilization 1 2
TF XylR Xylose Xylose utilization 4 4
TF YhgD 3 4
TF YisR Metabolite transport 1 1
TF YrkD Multidrug resistance 7 8
TF YtrA Ramoplanin Ramoplanin resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 2 1
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 3 3
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA Glycine Glycine Glycine metabolism 1 2
RNA L10_leader Ribosome biogenesis 1 1
RNA L13_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 2 1
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 2 1
RNA Purine Adenine; Guanine Purine metabolism 5 3
RNA PyrR PyrR Pyrimidine metabolism 3 3
RNA SAM S-adenosylmethionine Methionine biosynthesis 13 9
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Asp) Asp-tRNA Amino acid metabolism 1 1
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 4 1
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 3 2
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 3 2
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 2 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 2 1
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 3 1
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 4 1
RNA T-box(Val) Val-tRNA Amino acid metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 4 2
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA ydaO-yuaA Cell wall metabolism; Osmotic stress response 2 2
RNA ylbH 1 1
RNA yybP-ykoY 1 1
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