Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TnrA in Geobacillus kaustophilus HTA426

Properties
Regulator type: Transcription factor
TF locus tag: GK1860
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Regulog: TnrA - Bacillales
Statistics of regulated genes:
- Genes 32
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 304 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -177
Score: 4.9
Sequence: TGTAAGAAATTATGACG
Locus tag: GK2046
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
GK2046
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)
Position: -286
Score: 4.6
Sequence: TGTGATAAAAAGTTACA
Position: -202
Score: 5.2
Sequence: TGTTATATAAACTGACA
Locus tag: GK1868
Name: nasD
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: GK1867
Name: nasE
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Locus tag: GK1866
Name: nasC
Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
GK1868
nasD
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
GK1867
nasE
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
GK1866
nasC
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
Position: -124
Score: 4.4
Sequence: TGTTAAGAAATTTAACA
Position: -48
Score: 5.4
Sequence: TGTTATATATTATGACA
Locus tag: GK1452
Name: nrgA
Funciton: Ammonium transporter
Locus tag: GK1453
Name: null
Funciton: Predicted nucleotidyltransferase DUF294 family
Locus tag: GK1454
Name: dpo3
Funciton: DNA polymerase III, epsilon subunit
GK1452
nrgA
Ammonium transporter
GK1453
Predicted nucleotidyltransferase DUF294 family
GK1454
dpo3
DNA polymerase III, epsilon subunit
Position: -423
Score: 4.4
Sequence: TGTCAAAATTATTAACA
Position: -173
Score: 4.2
Sequence: TTTCAAATATACTAACA
Locus tag: GK0811
Name: dppE
Funciton: Oligopeptide ABC transporter (oligopeptide-binding protein)
Locus tag: GK0812
Name: oppB
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: GK0813
Name: oppC
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: GK0814
Name: oppD
Funciton: Oligopeptide ABC transporter (ATP-binding protein)
Locus tag: GK0815
Name: oppF
Funciton: Oligopeptide ABC transporter (ATP-binding protein)
GK0811
dppE
Oligopeptide ABC transporter (oligopeptide-binding protein)
GK0812
oppB
Oligopeptide ABC transporter (permease)
GK0813
oppC
Oligopeptide ABC transporter (permease)
GK0814
oppD
Oligopeptide ABC transporter (ATP-binding protein)
GK0815
oppF
Oligopeptide ABC transporter (ATP-binding protein)
Position: -100
Score: 4.2
Sequence: GGTTAGAAAATTTTACG
Locus tag: GK2487
Name: yqzL
Funciton: Hypothetical protein
Locus tag: GK2486
Name: recO
Funciton: DNA recombination and repair protein RecO
GK2487
yqzL
Hypothetical protein
GK2486
recO
DNA recombination and repair protein RecO
Position: -86
Score: 3.9
Sequence: TGTTAATTTTATTTACA
Position: -33
Score: 4.6
Sequence: CGTTAGAAAATATAACG
Locus tag: GK1860
Name: tnrA
Funciton: Transcriptional regulator of nitrogen assimilation, MerR family
GK1860
tnrA
Transcriptional regulator of nitrogen assimilation, MerR family
Position: -224
Score: 4.3
Sequence: TGATAATAAATATAACA
Position: -201
Score: 5.2
Sequence: TGTAATAAAATGTGACA
Locus tag: GK1937
Name: urtA
Funciton: Urea ABC transporter, urea binding protein
Locus tag: GK1936
Name: urtB
Funciton: Urea ABC transporter, permease protein UrtB
Locus tag: GK1935
Name: urtC
Funciton: Urea ABC transporter, permease protein UrtC
Locus tag: GK1934
Name: utrD
Funciton: Urea ABC transporter, ATPase protein UrtD
Locus tag: GK1933
Name: urtE
Funciton: Urea ABC transporter, ATPase protein UrtE
Locus tag: GK1932
Name: ureA
Funciton: Urease gamma subunit (EC 3.5.1.5)
Locus tag: GK1931
Name: ureB
Funciton: Urease beta subunit (EC 3.5.1.5)
Locus tag: GK1930
Name: ureC
Funciton: Urease alpha subunit (EC 3.5.1.5)
Locus tag: GK1929
Name: ureE
Funciton: Urease accessory protein UreE
Locus tag: GK1928
Name: ureF
Funciton: Urease accessory protein UreF
Locus tag: GK1927
Name: ureG
Funciton: Urease accessory protein UreG
Locus tag: GK1926
Name: ureD
Funciton: Urease accessory protein UreD
Locus tag: GK1925
Name: ureH
Funciton: Urease accessory protein ureH
GK1937
urtA
Urea ABC transporter, urea binding protein
GK1936
urtB
Urea ABC transporter, permease protein UrtB
GK1935
urtC
Urea ABC transporter, permease protein UrtC
GK1934
utrD
Urea ABC transporter, ATPase protein UrtD
GK1933
urtE
Urea ABC transporter, ATPase protein UrtE
GK1932
ureA
Urease gamma subunit (EC 3.5.1.5)
GK1931
ureB
Urease beta subunit (EC 3.5.1.5)
GK1930
ureC
Urease alpha subunit (EC 3.5.1.5)
GK1929
ureE
Urease accessory protein UreE
GK1928
ureF
Urease accessory protein UreF
GK1927
ureG
Urease accessory protein UreG
GK1926
ureD
Urease accessory protein UreD
GK1925
ureH
Urease accessory protein ureH
Position: -176
Score: 4.6
Sequence: CGTTATATTTTCTAACG
Position: -123
Score: 3.9
Sequence: TGTAAATAAAATTAACA
Locus tag: GK1861
Name: null
Funciton: Hypothetical protein
Locus tag: GK1862
Name: ykzB
Funciton: Hypothetical protein
GK1861
Hypothetical protein
GK1862
ykzB
Hypothetical protein
Position: -44
Score: 3.5
Sequence: TGAATTATTATATTAAA
Locus tag: GK2020
Name: yclF
Funciton: Di-tripeptide-proton ABC symporter
GK2020
yclF
Di-tripeptide-proton ABC symporter
Position: -16
Score: 4.9
Sequence: TGTGAGGTAATGTGACA
Locus tag: GK1637
Name: glnA2
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
GK1637
glnA2
Glutamine synthetase type I (EC 6.3.1.2)
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