Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Jannaschia sp. CCS1

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AfrR 1,5-Anhydro-d-Fructose utilization 2 3
TF AglR Alpha-glucoside; Maltose; Sucrose; Trehalose Alpha-glucosides utilization 2 3
TF CceR (GapR) 6-phosphogluconate Central carbohydrate metabolism 19 16
TF CueR Copper ion, (Cu+) Copper resistance 1 1
TF FnrN Oxygen Oxidative stress response; Nitrogen fixation 7 5
TF HrcA Heat shock Heat shock response 1 1
TF IolR Inositol utilization 4 4
TF Irr Heme Iron homeostasis 5 3
TF IscR Iron-sulfur cluster redox state; Iron ion, (Fe2+) Iron-sulfur cluster biogenesis; Iron homeostasis 10 14
TF Jann_1107 Sugar utilization 4 4
TF Jann_1459 Sugar utilization 2 2
TF Jann_3936 Sugar utilization 2 4
TF LexA DNA damage SOS response 9 9
TF LiuR Branched-chain amino acid degradation 1 1
TF MetR Homocysteine Methionine biosynthesis 3 1
TF Mur Manganese ion, (Mn2+) Manganese homeostasis 3 2
TF NagQ N-acetylglucosamine N-acetylglucosamine utilization 3 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 1
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 9 9
TF Pden_3389 Glycolate utilization; Lactate utilization 2 2
TF PhnF Phosphonate utilization 3 2
TF PpsR Blue light Photosynthesis 12 21
TF RutR Uracil Pyrimidine utilization 7 5
TF SPO0590 Sugar utilization 4 7
TF SmoR Sorbitol Sorbitol utilization; Mannitol utilization 2 2
TF TauR Taurine Taurine utilization 3 4
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 2
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 4 2
RNA Glycine Glycine Glycine metabolism 1 2
RNA S15 Ribosome biogenesis 1 1
RNA SAM-SAH S-adenosylmethionine; S-adenosylhomocysteine Methionine metabolism 1 1
RNA SAM_alpha S-adenosylmethionine Methionine biosynthesis 3 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 1
RNA mini-ykkC Multidrug resistance 1 1
RNA serC Serine biosynthesis 1 1
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