Regulons of Jannaschia sp. CCS1
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
AfrR |
|
1,5-Anhydro-d-Fructose utilization |
2 |
3 |
| TF |
AglR |
Alpha-glucoside; Maltose; Sucrose; Trehalose |
Alpha-glucosides utilization |
2 |
3 |
| TF |
CceR (GapR) |
6-phosphogluconate |
Central carbohydrate metabolism |
19 |
16 |
| TF |
CueR |
Copper ion, (Cu+) |
Copper resistance |
1 |
1 |
| TF |
FnrN |
Oxygen |
Oxidative stress response; Nitrogen fixation |
7 |
5 |
| TF |
HrcA |
Heat shock |
Heat shock response |
1 |
1 |
| TF |
IolR |
|
Inositol utilization |
4 |
4 |
| TF |
Irr |
Heme |
Iron homeostasis |
5 |
3 |
| TF |
IscR |
Iron-sulfur cluster redox state; Iron ion, (Fe2+) |
Iron-sulfur cluster biogenesis; Iron homeostasis |
10 |
14 |
| TF |
Jann_1107 |
|
Sugar utilization |
4 |
4 |
| TF |
Jann_1459 |
|
Sugar utilization |
2 |
2 |
| TF |
Jann_3936 |
|
Sugar utilization |
2 |
4 |
| TF |
LexA |
DNA damage |
SOS response |
9 |
9 |
| TF |
LiuR |
|
Branched-chain amino acid degradation |
1 |
1 |
| TF |
MetR |
Homocysteine |
Methionine biosynthesis |
3 |
1 |
| TF |
Mur |
Manganese ion, (Mn2+) |
Manganese homeostasis |
3 |
2 |
| TF |
NagQ |
N-acetylglucosamine |
N-acetylglucosamine utilization |
3 |
2 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
1 |
1 |
| TF |
NtrC |
Phosphorylated NtrB, signal histidine kinase |
Nitrogen assimilation |
9 |
9 |
| TF |
Pden_3389 |
|
Glycolate utilization; Lactate utilization |
2 |
2 |
| TF |
PhnF |
|
Phosphonate utilization |
3 |
2 |
| TF |
PpsR |
Blue light |
Photosynthesis |
12 |
21 |
| TF |
RutR |
Uracil |
Pyrimidine utilization |
7 |
5 |
| TF |
SPO0590 |
|
Sugar utilization |
4 |
7 |
| TF |
SmoR |
Sorbitol |
Sorbitol utilization; Mannitol utilization |
2 |
2 |
| TF |
TauR |
Taurine |
Taurine utilization |
3 |
4 |
| TF |
Zur |
Zinc ion, (Zn2+) |
Zinc homeostasis |
3 |
2 |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
4 |
2 |
| RNA |
Glycine |
Glycine |
Glycine metabolism |
1 |
2 |
| RNA |
S15 |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
SAM-SAH |
S-adenosylmethionine; S-adenosylhomocysteine |
Methionine metabolism |
1 |
1 |
| RNA |
SAM_alpha |
S-adenosylmethionine |
Methionine biosynthesis |
3 |
1 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
3 |
1 |
| RNA |
mini-ykkC |
|
Multidrug resistance |
1 |
1 |
| RNA |
serC |
|
Serine biosynthesis |
1 |
1 |
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