Regulon of PpsR in Jannaschia sp. CCS1

Properties
Regulator type:	Transcription factor
TF locus tag:	Jann_0164
Regulator family:	[Other]
Regulation mode:	repressor
Biological process:	Photosynthesis
Effector:	Blue light
Regulog:	PpsR - Rhodobacterales
Statistics of regulated genes:
- Genes	46
- Operons	12
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 74 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - [Other]
By effector - Blue light
By pathway - Photosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -98 Score: 5.2 Sequence: TGTCAGTCAATGTTGACA Position: -67 Score: 4.8 Sequence: TGTCCAGTCTGATTTACA Locus tag: Jann_0182 Name: crtE Funciton: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) Locus tag: Jann_0181 Name: crtF Funciton: Hydroxyneurosporene methyltransferase (EC 2.1.1.-)
	Jann_0182	crtE	Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
	Jann_0181	crtF	Hydroxyneurosporene methyltransferase (EC 2.1.1.-)
Position: -67 Score: 5.2 Sequence: TGTAAGGTTGAGTTGACA Locus tag: Jann_0300 Name: hcaR Funciton: 7-hydroxymethyl chlorophyll a reductase
	Jann_0300	hcaR	7-hydroxymethyl chlorophyll a reductase
Position: -163 Score: 5.2 Sequence: TGTCAATCATGATTTACA Position: -138 Score: 4.9 Sequence: TGTCAGTTAATTGTGACA Locus tag: Jann_1581 Name: null Funciton: antenna complex, alpha/beta subunit Locus tag: Jann_1582 Name: null Funciton: antenna complex, alpha/beta subunit Locus tag: Jann_1583 Name: pucBA Funciton: Light-harvesting 1 (B870) complex assembly
	Jann_1581		antenna complex, alpha/beta subunit
	Jann_1582		antenna complex, alpha/beta subunit
	Jann_1583	pucBA	Light-harvesting 1 (B870) complex assembly
Position: -86 Score: 5.4 Sequence: TGTCAACTTGGCTTGACA Locus tag: Jann_3846 Name: hemE Funciton: Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
	Jann_3846	hemE	Uroporphyrinogen III decarboxylase (EC 4.1.1.37)
Position: -110 Score: 5.1 Sequence: TGTCCATATTAGTTGACA Position: -34 Score: 5.3 Sequence: TGTCAGACTTGGTTGACA Locus tag: Jann_0144 Name: crtA Funciton: Spheroidene monooxygenase Locus tag: Jann_0145 Name: bchI Funciton: Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1) Locus tag: Jann_0146 Name: bchD Funciton: Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1) Locus tag: Jann_0147 Name: bchO Funciton: Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1)
	Jann_0144	crtA	Spheroidene monooxygenase
	Jann_0145	bchI	Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1)
	Jann_0146	bchD	Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1)
	Jann_0147	bchO	Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1)
Position: -50 Score: 4.8 Sequence: TGTAAATCAGACTGGACA Position: -19 Score: 5.2 Sequence: TGTCAACATTGACTGACA Locus tag: Jann_0183 Name: crtD Funciton: Methoxyneurosporene dehydrogenase (EC 1.14.99.-) Locus tag: Jann_0184 Name: ctrC Funciton: Hydroxyneurosporene synthase
	Jann_0183	crtD	Methoxyneurosporene dehydrogenase (EC 1.14.99.-)
	Jann_0184	ctrC	Hydroxyneurosporene synthase
Position: -87 Score: 5.3 Sequence: TGTCAACCAAGTCTGACA Position: -11 Score: 5.1 Sequence: TGTCAACTAATATGGACA Locus tag: Jann_0143 Name: crtI Funciton: Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-) Locus tag: Jann_0142 Name: crtB Funciton: Phytoene synthase (EC 2.5.1.32)
	Jann_0143	crtI	Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-)
	Jann_0142	crtB	Phytoene synthase (EC 2.5.1.32)
Position: -262 Score: 5.4 Sequence: TGTCAATCTAAACTTACA Position: -119 Score: 4.6 Sequence: TGTCTAATTTCTATGACA Locus tag: Jann_0163 Name: ppaA Funciton: PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation Locus tag: Jann_0164 Name: ppsR Funciton: Regulator of carotenoid biosynthesis PpsR
	Jann_0163	ppaA	PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation
	Jann_0164	ppsR	Regulator of carotenoid biosynthesis PpsR
Position: -125 Score: 5 Sequence: TGTCTATTCACGTTGACA Position: -99 Score: 5.4 Sequence: TGTCAGGTTAAACTGACA Locus tag: Jann_0180 Name: bchC Funciton: Chlorophyll synthesis pathway, bchC Locus tag: Jann_0179 Name: bchX Funciton: Chlorophyllide reductase subunit BchX (EC 1.18.-.-) Locus tag: Jann_0178 Name: bchY Funciton: Chlorophyllide reductase subunit BchY (EC 1.18.-.-) Locus tag: Jann_0177 Name: bchZ Funciton: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-) Locus tag: Jann_0176 Name: pufQ Funciton: Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes Locus tag: Jann_0175 Name: pufB Funciton: Light-harvesting LHI, beta subunit Locus tag: Jann_0174 Name: pufA Funciton: Light-harvesting LHI, alpha subunit Locus tag: Jann_0173 Name: pufL Funciton: Photosynthetic reaction center L subunit Locus tag: Jann_0172 Name: pufM Funciton: Photosynthetic reaction center M subunit Locus tag: Jann_0171 Name: pufC Funciton: Photosynthetic reaction center cytochrome c subunit Locus tag: Jann_0170 Name: dxsA Funciton: 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)
	Jann_0180	bchC	Chlorophyll synthesis pathway, bchC
	Jann_0179	bchX	Chlorophyllide reductase subunit BchX (EC 1.18.-.-)
	Jann_0178	bchY	Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
	Jann_0177	bchZ	Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)
	Jann_0176	pufQ	Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes
	Jann_0175	pufB	Light-harvesting LHI, beta subunit
	Jann_0174	pufA	Light-harvesting LHI, alpha subunit
	Jann_0173	pufL	Photosynthetic reaction center L subunit
	Jann_0172	pufM	Photosynthetic reaction center M subunit
	Jann_0171	pufC	Photosynthetic reaction center cytochrome c subunit
	Jann_0170	dxsA	1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)
Position: -56 Score: 4.5 Sequence: CGTAAACCTGAGTTTACA Position: -21 Score: 5.4 Sequence: TGTCAGCCTAAGCTGACA Locus tag: Jann_0165 Name: bchG Funciton: Bacteriochlorophyll/chlorophyll synthetase Locus tag: Jann_0166 Name: pucC Funciton: Bacteriochlorophyll synthase 44.5 kDa chain Locus tag: Jann_0167 Name: bchP Funciton: Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83)
	Jann_0165	bchG	Bacteriochlorophyll/chlorophyll synthetase
	Jann_0166	pucC	Bacteriochlorophyll synthase 44.5 kDa chain
	Jann_0167	bchP	Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83)
Position: -34 Score: 5.4 Sequence: TGTCAAGCCAAGTTGACA Locus tag: Jann_3845 Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
	Jann_3845	hemC	Porphobilinogen deaminase (EC 2.5.1.61)
Position: -216 Score: 4.6 Sequence: TGTCATAGAAATTAGACA Position: -73 Score: 5.4 Sequence: TGTAAGTTTAGATTGACA Locus tag: Jann_0162 Name: bchF Funciton: 2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-) Locus tag: Jann_0161 Name: bchN Funciton: Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-) Locus tag: Jann_0160 Name: bchB Funciton: Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-) Locus tag: Jann_0159 Name: bchH Funciton: Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1) Locus tag: Jann_0158 Name: bchL Funciton: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-) Locus tag: Jann_0157 Name: bchM Funciton: Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11) Locus tag: Jann_0156 Name: pucC2 Funciton: Light-harvesting 1 (B870) complex assembly Locus tag: Jann_0155 Name: puhA Funciton: Photosynthetic reaction center H subunit Locus tag: Jann_0154 Name: RSP_0292 Funciton: Putative photosynthetic complex assembly protein Locus tag: Jann_0153 Name: RSP_0293 Funciton: hypothetical protein Locus tag: Jann_0152 Name: RSP_6110 Funciton: hypothetical protein Locus tag: Jann_0151 Name: acsF Funciton: Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81) Locus tag: Jann_0150 Name: RSP_0295 Funciton: hypothetical protein Locus tag: Jann_0149 Name: hemA Funciton: 5-aminolevulinate synthase (EC 2.3.1.37)
	Jann_0162	bchF	2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-)
	Jann_0161	bchN	Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-)
	Jann_0160	bchB	Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-)
	Jann_0159	bchH	Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1)
	Jann_0158	bchL	Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-)
	Jann_0157	bchM	Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11)
	Jann_0156	pucC2	Light-harvesting 1 (B870) complex assembly
	Jann_0155	puhA	Photosynthetic reaction center H subunit
	Jann_0154	RSP_0292	Putative photosynthetic complex assembly protein
	Jann_0153	RSP_0293	hypothetical protein
	Jann_0152	RSP_6110	hypothetical protein
	Jann_0151	acsF	Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81)
	Jann_0150	RSP_0295	hypothetical protein
	Jann_0149	hemA	5-aminolevulinate synthase (EC 2.3.1.37)

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of PpsR in Jannaschia sp. CCS1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --