Regulog PpsR - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | repressor |
| Biological process: | Photosynthesis |
| Effector: | Blue light |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - [Other]
- By effector - Blue light
- By pathway - Photosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Hyphomonas neptunium ATCC 15444 | ||
| Jannaschia sp. CCS1 | 46 | 12 |
| Loktanella vestfoldensis SKA53 | 44 | 10 |
| Oceanicaulis alexandrii HTCC2633 | ||
| Oceanicola batsensis HTCC2597 | ||
| Oceanicola granulosus HTCC2516 | ||
| Paracoccus denitrificans PD1222 | ||
| Rhodobacter sphaeroides 2.4.1 | 48 | 12 |
| Rhodobacterales bacterium HTCC2654 | ||
| Roseobacter sp. MED193 | ||
| Roseovarius nubinhibens ISM | ||
| Roseovarius sp. 217 | 43 | 9 |
| Silicibacter TM1040 | ||
| Silicibacter pomeroyi DSS-3 | ||
| Sulfitobacter sp. EE-36 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| crtI |
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Jannaschia sp. CCS1 Site: position = -87 score = 5.28302 sequence = TGTCAACCAAGTCTGACA Site: position = -11 score = 5.12708 sequence = TGTCAACTAATATGGACA Gene: Jann_0143: Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-) |
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Loktanella vestfoldensis SKA53 Site: position = -34 score = 5.41799 sequence = TGTCAACTTTGGTTTACA Site: position = -9 score = 4.03407 sequence = TGTGGGCTTATGTTGACA Site: position = -90 score = 5.47341 sequence = TGTCAACTTAGTCTGACA Gene: SKA53_12118: Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-) |
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Rhodobacter sphaeroides 2.4.1 Site: position = -64 score = 4.87731 sequence = TGTAAACCTGACTAGACA Gene: RSP_0271: Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-) |
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Roseovarius sp. 217 Site: position = -34 score = 5.34464 sequence = TGTCAATTAAACTAGACA Site: position = -89 score = 5.1958 sequence = TGTCAGATAAGTCTGACA Gene: ROS217_22367: Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-) |
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Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-) |
| crtB |
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Gene: Jann_0142: Phytoene synthase (EC 2.5.1.32) |
Gene: SKA53_12123: Phytoene synthase (EC 2.5.1.32) |
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Gene: RSP_0270: Phytoene synthase (EC 2.5.1.32) |
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Gene: ROS217_22362: Phytoene synthase (EC 2.5.1.32) |
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Phytoene synthase (EC 2.5.1.32) |
| tspO |
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Gene: SKA53_12128: Regulatory protein TspO |
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Gene: RSP_0269: Regulatory protein TspO |
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Gene: ROS217_22357: Regulatory protein TspO |
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Regulatory protein TspO |
| CRON 2. | ||||||||||||||||
| crtA |
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Jannaschia sp. CCS1 Site: position = -110 score = 5.12708 sequence = TGTCCATATTAGTTGACA Site: position = -34 score = 5.28302 sequence = TGTCAGACTTGGTTGACA Gene: Jann_0144: Spheroidene monooxygenase |
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Loktanella vestfoldensis SKA53 Site: position = -116 score = 4.03407 sequence = TGTCAACATAAGCCCACA Site: position = -91 score = 5.41799 sequence = TGTAAACCAAAGTTGACA Site: position = -35 score = 5.47341 sequence = TGTCAGACTAAGTTGACA Gene: SKA53_12113: Spheroidene monooxygenase |
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Rhodobacter sphaeroides 2.4.1 Site: position = -111 score = 4.87731 sequence = TGTCTAGTCAGGTTTACA Gene: RSP_0272: Spheroidene monooxygenase |
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Roseovarius sp. 217 Site: position = -37 score = 4.47858 sequence = TGTCAACATAAGATGACC Site: position = -12 score = 5.34464 sequence = TGTCTAGTTTAATTGACA Gene: ROS217_22372: Spheroidene monooxygenase |
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Spheroidene monooxygenase |
| bchI |
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Gene: Jann_0145: Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1) |
Gene: SKA53_12108: Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1) |
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Gene: RSP_0273: Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1) |
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Gene: ROS217_22377: Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1) |
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Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1) |
| bchD |
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Gene: Jann_0146: Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1) |
Gene: SKA53_12103: Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1) |
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Gene: RSP_0274: Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1) |
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Gene: ROS217_22382: Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1) |
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Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1) |
| bchO |
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Gene: Jann_0147: Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1) |
Gene: SKA53_12098: Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1) |
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Gene: RSP_0275: Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1) |
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Gene: ROS217_22387: Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1) |
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Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1) |
| CRON 3. | ||||||||||||||||
| hcaR |
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*
Jannaschia sp. CCS1 Site: position = -67 score = 5.16859 sequence = TGTAAGGTTGAGTTGACA Gene: Jann_0300: 7-hydroxymethyl chlorophyll a reductase |
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Loktanella vestfoldensis SKA53 Site: position = -46 score = 5.0362 sequence = TGTAAATCAAACTGGACA Gene: SKA53_10144: 7-hydroxymethyl chlorophyll a reductase |
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7-hydroxymethyl chlorophyll a reductase |
| CRON 4. | ||||||||||||||||
| Jann_1581 |
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*
Jannaschia sp. CCS1 Site: position = -163 score = 5.24421 sequence = TGTCAATCATGATTTACA Site: position = -138 score = 4.88511 sequence = TGTCAGTTAATTGTGACA Gene: Jann_1581: antenna complex, alpha/beta subunit |
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antenna complex, alpha/beta subunit |
| Jann_1582 |
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Gene: Jann_1582: antenna complex, alpha/beta subunit |
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antenna complex, alpha/beta subunit |
| pucBA |
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Gene: Jann_1583: Light-harvesting 1 (B870) complex assembly |
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Gene: RSP_0315: Light-harvesting 1 (B870) complex assembly |
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Light-harvesting 1 (B870) complex assembly |
| pucB |
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*
Rhodobacter sphaeroides 2.4.1 Site: position = -169 score = 5.02914 sequence = TGTCAGCCAACACTGACA Site: position = -144 score = 4.69052 sequence = TGTCAGCGCAATGTGACA Gene: RSP_0314: Light-harvesting LHII, beta subunit A |
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Light-harvesting LHII, beta subunit A |
| pucA |
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Gene: RSP_6256: Light-harvesting LHII, alpha subunit A |
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Light-harvesting LHII, alpha subunit A |
| CRON 5. | ||||||||||||||||
| hemE |
Gene: HNE_3568: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
*
Jannaschia sp. CCS1 Site: position = -86 score = 5.38269 sequence = TGTCAACTTGGCTTGACA Gene: Jann_3846: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
Gene: SKA53_08221: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
Gene: OA2633_10034: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
Gene: OB2597_10471: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
Gene: OG2516_09478: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
Gene: Pden_3629: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
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Rhodobacter sphaeroides 2.4.1 Site: position = -84 score = 4.73872 sequence = TGTCCATTTGCCCTGACA Gene: RSP_0680: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
Gene: RB2654_10069: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
Gene: MED193_11118: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
Gene: ISM_11815: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
Gene: ROS217_17562: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
Gene: TM1040_2528: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
Gene: SPO3648: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
Gene: EE36_05193: Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
Uroporphyrinogen III decarboxylase (EC 4.1.1.37) |
| CRON 6. | ||||||||||||||||
| bchE |
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Rhodobacter sphaeroides 2.4.1 Site: position = -34 score = 4.92565 sequence = TGTCAACTGAAATGGACA Gene: RSP_0281: Mg-protoporphyrin IX monomethyl ester oxidative cyclase (anaerobic) (EC 1.14.13.81) |
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Roseovarius sp. 217 Site: position = -58 score = 5.73527 sequence = TGTCAAGTTAAGTTGACA Gene: ROS217_16035: Mg-protoporphyrin IX monomethyl ester oxidative cyclase (anaerobic) (EC 1.14.13.81) |
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Mg-protoporphyrin IX monomethyl ester oxidative cyclase (anaerobic) (EC 1.14.13.81) |
| bchJ |
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Gene: RSP_0280: Protein BchJ, involved in reduction of C-8 vinyl of divinyl protochlorophyllide |
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Gene: ROS217_16030: Protein BchJ, involved in reduction of C-8 vinyl of divinyl protochlorophyllide |
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Protein BchJ, involved in reduction of C-8 vinyl of divinyl protochlorophyllide |
| CRON 7. | ||||||||||||||||
| hemC |
Gene: HNE_3227: Porphobilinogen deaminase (EC 2.5.1.61) |
*
Jannaschia sp. CCS1 Site: position = -34 score = 5.38269 sequence = TGTCAAGCCAAGTTGACA Gene: Jann_3845: Porphobilinogen deaminase (EC 2.5.1.61) |
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Loktanella vestfoldensis SKA53 Site: position = -35 score = 5.12913 sequence = TGTCAGGCCAGATTGACA Gene: SKA53_08216: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: OA2633_10709: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: OB2597_10476: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: OG2516_09473: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: Pden_3630: Porphobilinogen deaminase (EC 2.5.1.61) |
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Rhodobacter sphaeroides 2.4.1 Site: position = -35 score = 4.73872 sequence = TGTCAGGGCAAATGGACA Gene: RSP_0679: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: RB2654_10064: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: MED193_11123: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: ISM_11820: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: ROS217_17557: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: TM1040_2529: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: SPO3649: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: EE36_05198: Porphobilinogen deaminase (EC 2.5.1.61) |
Porphobilinogen deaminase (EC 2.5.1.61) |
| CRON 8. | ||||||||||||||||
| crtE |
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Jannaschia sp. CCS1 Site: position = -98 score = 5.20023 sequence = TGTCAGTCAATGTTGACA Site: position = -67 score = 4.79848 sequence = TGTCCAGTCTGATTTACA Gene: Jann_0182: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) |
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Loktanella vestfoldensis SKA53 Site: position = -71 score = 4.49092 sequence = TGTATCGTTTGATTTACA Site: position = -45 score = 5.21776 sequence = TGTAAACTAAAATAGACA Gene: SKA53_12318: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) |
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Rhodobacter sphaeroides 2.4.1 Site: position = -90 score = 5.06974 sequence = TGTAAGAAAAAGTTGACA Gene: RSP_0265: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) |
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Roseovarius sp. 217 Site: position = -63 score = 4.96068 sequence = TGTCCAGTATGATTTACA Site: position = -38 score = 4.46251 sequence = TGTCAGATTTGTGATACA Gene: ROS217_22342: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) |
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Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) |
| crtF |
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Gene: Jann_0181: Hydroxyneurosporene methyltransferase (EC 2.1.1.-) |
Gene: SKA53_12323: Hydroxyneurosporene methyltransferase (EC 2.1.1.-) |
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Gene: RSP_0264: Hydroxyneurosporene methyltransferase (EC 2.1.1.-) |
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Gene: ROS217_22337: Hydroxyneurosporene methyltransferase (EC 2.1.1.-) |
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Hydroxyneurosporene methyltransferase (EC 2.1.1.-) |
| CRON 9. | ||||||||||||||||
| crtD |
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Jannaschia sp. CCS1 Site: position = -50 score = 4.79848 sequence = TGTAAATCAGACTGGACA Site: position = -19 score = 5.20023 sequence = TGTCAACATTGACTGACA Gene: Jann_0183: Methoxyneurosporene dehydrogenase (EC 1.14.99.-) |
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Loktanella vestfoldensis SKA53 Site: position = -61 score = 5.21776 sequence = TGTCTATTTTAGTTTACA Site: position = -35 score = 4.49092 sequence = TGTAAATCAAACGATACA Gene: SKA53_12313: Methoxyneurosporene dehydrogenase (EC 1.14.99.-) |
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Rhodobacter sphaeroides 2.4.1 Site: position = -72 score = 5.06974 sequence = TGTCAACTTTTTCTTACA Gene: RSP_0266: Methoxyneurosporene dehydrogenase (EC 1.14.99.-) |
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Roseovarius sp. 217 Site: position = -72 score = 4.46251 sequence = TGTATCACAAATCTGACA Site: position = -47 score = 4.96068 sequence = TGTAAATCATACTGGACA Gene: ROS217_22347: Methoxyneurosporene dehydrogenase (EC 1.14.99.-) |
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Methoxyneurosporene dehydrogenase (EC 1.14.99.-) |
| ctrC |
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Gene: Jann_0184: Hydroxyneurosporene synthase |
Gene: SKA53_12308: Hydroxyneurosporene synthase |
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Gene: RSP_0267: Hydroxyneurosporene synthase |
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Gene: ROS217_22352: Hydroxyneurosporene synthase |
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Hydroxyneurosporene synthase |
| CRON 10. | ||||||||||||||||
| bchG |
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Jannaschia sp. CCS1 Site: position = -56 score = 4.53242 sequence = CGTAAACCTGAGTTTACA Site: position = -21 score = 5.3815 sequence = TGTCAGCCTAAGCTGACA Gene: Jann_0165: Bacteriochlorophyll/chlorophyll synthetase |
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Loktanella vestfoldensis SKA53 Site: position = -55 score = 5.2039 sequence = TGTAAGCTTTAGTTTACA Site: position = -20 score = 5.11884 sequence = TGTCATCTTAGACTGACA Gene: SKA53_10604: Bacteriochlorophyll/chlorophyll synthetase |
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Rhodobacter sphaeroides 2.4.1 Site: position = -21 score = 4.21062 sequence = CGTCATGCTTAGGTGACA Site: position = 5 score = 5.03869 sequence = TGTCAATCTATCCTTACA Gene: RSP_0279: Bacteriochlorophyll/chlorophyll synthetase |
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Roseovarius sp. 217 Site: position = -20 score = 5.16267 sequence = TGTATAGTTTAATTGACA Site: position = 5 score = 4.1169 sequence = TGTCACAGAGTCCTTACA Gene: ROS217_22192: Bacteriochlorophyll/chlorophyll synthetase |
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Bacteriochlorophyll/chlorophyll synthetase |
| pucC |
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Gene: Jann_0166: Bacteriochlorophyll synthase 44.5 kDa chain |
Gene: SKA53_10609: Bacteriochlorophyll synthase 44.5 kDa chain |
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Gene: RSP_0278: Bacteriochlorophyll synthase 44.5 kDa chain |
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Gene: ROS217_22187: Bacteriochlorophyll synthase 44.5 kDa chain |
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Bacteriochlorophyll synthase 44.5 kDa chain |
| bchP |
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Gene: Jann_0167: Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83) |
Gene: SKA53_10614: Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83) |
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Gene: RSP_0277: Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83) |
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Gene: ROS217_22182: Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83) |
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Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83) |
| CRON 11. | ||||||||||||||||
| bchC |
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Jannaschia sp. CCS1 Site: position = -125 score = 4.95241 sequence = TGTCTATTCACGTTGACA Site: position = -99 score = 5.44958 sequence = TGTCAGGTTAAACTGACA Gene: Jann_0180: Chlorophyll synthesis pathway, bchC |
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Loktanella vestfoldensis SKA53 Site: position = -181 score = 5.14881 sequence = TGTAAGGTAAAGTTTACA Site: position = -156 score = 4.84589 sequence = TGTCTAAAAGAATTGACA Gene: SKA53_12328: Chlorophyll synthesis pathway, bchC |
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Rhodobacter sphaeroides 2.4.1 Site: position = -116 score = 5.32474 sequence = TGTCCAATAAAGTTGACA Site: position = -90 score = 4.41339 sequence = TGTCCCGTTAATGTTACA Gene: RSP_0263: Chlorophyll synthesis pathway, bchC |
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Roseovarius sp. 217 Site: position = -187 score = 4.6392 sequence = TGTCAAGTCAGCCTGACG Site: position = -153 score = 5.11017 sequence = TGTAAAGAAAGATTGACA Site: position = -127 score = 4.64746 sequence = TGTCCGGTTACACTTACA Gene: ROS217_22332: Chlorophyll synthesis pathway, bchC |
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Chlorophyll synthesis pathway, bchC |
| bchX |
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Gene: Jann_0179: Chlorophyllide reductase subunit BchX (EC 1.18.-.-) |
Gene: SKA53_12333: Chlorophyllide reductase subunit BchX (EC 1.18.-.-) |
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Gene: RSP_0262: Chlorophyllide reductase subunit BchX (EC 1.18.-.-) |
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Gene: ROS217_22327: Chlorophyllide reductase subunit BchX (EC 1.18.-.-) |
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Chlorophyllide reductase subunit BchX (EC 1.18.-.-) |
| bchY |
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Gene: Jann_0178: Chlorophyllide reductase subunit BchY (EC 1.18.-.-) |
Gene: SKA53_12343: Chlorophyllide reductase subunit BchY (EC 1.18.-.-) |
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Gene: RSP_0261: Chlorophyllide reductase subunit BchY (EC 1.18.-.-) |
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Gene: ROS217_22322: Chlorophyllide reductase subunit BchY (EC 1.18.-.-) |
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Chlorophyllide reductase subunit BchY (EC 1.18.-.-) |
| bchZ |
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Gene: Jann_0177: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-) |
Gene: SKA53_12348: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-) |
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Gene: RSP_0260: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-) |
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Gene: ROS217_22317: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-) |
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Chlorophyllide reductase subunit BchZ (EC 1.18.-.-) |
| pufQ |
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Gene: Jann_0176: Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes |
Gene: SKA53_12353: Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes |
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Gene: RSP_0259: Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes |
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Gene: ROS217_22312: Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes |
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Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes |
| pufK |
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Gene: RSP_6109: Transcriptional regulatory protein pufK |
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Transcriptional regulatory protein pufK |
| pufB |
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Gene: Jann_0175: Light-harvesting LHI, beta subunit |
Gene: SKA53_12358: Light-harvesting LHI, beta subunit |
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Gene: RSP_6108: Light-harvesting LHI, beta subunit |
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Gene: ROS217_22307: Light-harvesting LHI, beta subunit |
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Light-harvesting LHI, beta subunit |
| pufA |
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Gene: Jann_0174: Light-harvesting LHI, alpha subunit |
Gene: SKA53_12363: Light-harvesting LHI, alpha subunit |
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Gene: RSP_0258: Light-harvesting LHI, alpha subunit |
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Gene: ROS217_22302: Light-harvesting LHI, alpha subunit |
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Light-harvesting LHI, alpha subunit |
| pufL |
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Gene: Jann_0173: Photosynthetic reaction center L subunit |
Gene: SKA53_12368: Photosynthetic reaction center L subunit |
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Gene: RSP_0257: Photosynthetic reaction center L subunit |
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Gene: ROS217_22297: Photosynthetic reaction center L subunit |
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Photosynthetic reaction center L subunit |
| pufM |
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Gene: Jann_0172: Photosynthetic reaction center M subunit |
Gene: SKA53_12373: Photosynthetic reaction center M subunit |
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Gene: RSP_0256: Photosynthetic reaction center M subunit |
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Gene: ROS217_22292: Photosynthetic reaction center M subunit |
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Photosynthetic reaction center M subunit |
| pufX |
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Gene: SKA53_12378: Protein PufX, involved in assembly of B875 and B800-850 pigment-protein complexes |
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Gene: RSP_0255: Protein PufX, involved in assembly of B875 and B800-850 pigment-protein complexes |
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Protein PufX, involved in assembly of B875 and B800-850 pigment-protein complexes |
| dxsA |
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Gene: Jann_0170: 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) |
Gene: SKA53_12383: 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) |
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Gene: RSP_0254: 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) |
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Gene: ROS217_22282: 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) |
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1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) |
| SKA53_12338 |
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Gene: SKA53_12338: hypothetical protein |
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hypothetical protein |
| pufC |
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Gene: Jann_0171: Photosynthetic reaction center cytochrome c subunit |
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Gene: ROS217_22287: Photosynthetic reaction center cytochrome c subunit |
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Photosynthetic reaction center cytochrome c subunit |
| CRON 12. | ||||||||||||||||
| ppaA |
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*
Jannaschia sp. CCS1 Site: position = -262 score = 5.36312 sequence = TGTCAATCTAAACTTACA Site: position = -119 score = 4.57817 sequence = TGTCTAATTTCTATGACA Gene: Jann_0163: PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation |
*
Loktanella vestfoldensis SKA53 Site: position = -233 score = 5.45844 sequence = TGTCAATTTACTTTGACA Gene: SKA53_12018: PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation |
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*
Rhodobacter sphaeroides 2.4.1 Site: position = -296 score = 5.04989 sequence = TGTCAATTCTGACTTACA Site: position = -152 score = 5.38292 sequence = TGTCAATTTTCTTTGACA Gene: RSP_0283: PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation |
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*
Roseovarius sp. 217 Site: position = -218 score = 5.27215 sequence = TGTCAGGATAATTTGACA Gene: ROS217_22202: PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation |
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PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation |
| ppsR |
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Gene: Jann_0164: Regulator of carotenoid biosynthesis PpsR |
Gene: SKA53_12013: Regulator of carotenoid biosynthesis PpsR |
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Gene: RSP_0282: Regulator of carotenoid biosynthesis PpsR |
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Gene: ROS217_22197: Regulator of carotenoid biosynthesis PpsR |
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Regulator of carotenoid biosynthesis PpsR |
| CRON 13. | ||||||||||||||||
| bchF |
|
*
Jannaschia sp. CCS1 Site: position = -73 score = 5.36312 sequence = TGTAAGTTTAGATTGACA Site: position = -216 score = 4.57817 sequence = TGTCATAGAAATTAGACA Gene: Jann_0162: 2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-) |
*
Loktanella vestfoldensis SKA53 Site: position = -68 score = 5.39417 sequence = TGTAAGTTAAAGTTGACA Site: position = -192 score = 5.45844 sequence = TGTCAAAGTAAATTGACA Gene: SKA53_12023: 2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-) |
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*
Rhodobacter sphaeroides 2.4.1 Site: position = -94 score = 5.04989 sequence = TGTAAGTCAGAATTGACA Site: position = -238 score = 5.38292 sequence = TGTCAAAGAAAATTGACA Gene: RSP_0284: 2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-) |
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*
Roseovarius sp. 217 Site: position = -76 score = 5.47394 sequence = TGTAAATTATAATTGACA Site: position = -247 score = 5.27215 sequence = TGTCAAATTATCCTGACA Gene: ROS217_22207: 2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-) |
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2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-) |
| bchN |
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Gene: Jann_0161: Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-) |
Gene: SKA53_12028: Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-) |
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Gene: RSP_0285: Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-) |
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Gene: ROS217_22212: Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-) |
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Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-) |
| bchB |
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Gene: Jann_0160: Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-) |
Gene: SKA53_12033: Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-) |
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Gene: RSP_0286: Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-) |
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Gene: ROS217_22217: Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-) |
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Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-) |
| bchH |
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Gene: Jann_0159: Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1) |
Gene: SKA53_12038: Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1) |
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Gene: RSP_0287: Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1) |
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Gene: ROS217_22222: Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1) |
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Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1) |
| bchL |
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Gene: Jann_0158: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-) |
Gene: SKA53_12043: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-) |
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Gene: RSP_0288: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-) |
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Gene: ROS217_22227: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-) |
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Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-) |
| bchM |
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Gene: Jann_0157: Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11) |
Gene: SKA53_12048: Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11) |
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Gene: RSP_0289: Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11) |
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Gene: ROS217_22232: Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11) |
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Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11) |
| pucC2 |
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Gene: Jann_0156: Light-harvesting 1 (B870) complex assembly |
Gene: SKA53_12053: Light-harvesting 1 (B870) complex assembly |
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Gene: RSP_0290: Light-harvesting 1 (B870) complex assembly |
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Gene: ROS217_22237: Light-harvesting 1 (B870) complex assembly |
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Light-harvesting 1 (B870) complex assembly |
| puhA |
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Gene: Jann_0155: Photosynthetic reaction center H subunit |
Gene: SKA53_12058: Photosynthetic reaction center H subunit |
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Gene: RSP_0291: Photosynthetic reaction center H subunit |
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Gene: ROS217_22242: Photosynthetic reaction center H subunit |
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Photosynthetic reaction center H subunit |
| RSP_0292 |
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Gene: Jann_0154: Putative photosynthetic complex assembly protein |
Gene: SKA53_12063: Putative photosynthetic complex assembly protein |
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Gene: RSP_0292: Putative photosynthetic complex assembly protein |
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Gene: ROS217_22247: Putative photosynthetic complex assembly protein |
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Putative photosynthetic complex assembly protein |
| RSP_0293 |
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Gene: Jann_0153: hypothetical protein |
Gene: SKA53_12068: hypothetical protein |
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Gene: RSP_0293: hypothetical protein |
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Gene: ROS217_22252: hypothetical protein |
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hypothetical protein |
| RSP_6110 |
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Gene: Jann_0152: hypothetical protein |
Gene: SKA53_12073: hypothetical protein |
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Gene: RSP_6110: hypothetical protein |
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Gene: ROS217_22257: hypothetical protein |
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hypothetical protein |
| acsF |
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Gene: Jann_0151: Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81) |
Gene: SKA53_12078: Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81) |
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Gene: RSP_0294: Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81) |
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Gene: ROS217_22262: Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81) |
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Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81) |
| RSP_0295 |
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Gene: Jann_0150: hypothetical protein |
Gene: SKA53_12083: hypothetical protein |
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Gene: RSP_0295: hypothetical protein |
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Gene: ROS217_22267: hypothetical protein |
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hypothetical protein |
| hemA |
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Gene: Jann_0149: 5-aminolevulinate synthase (EC 2.3.1.37) |
Gene: SKA53_12088: 5-aminolevulinate synthase (EC 2.3.1.37) |
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Gene: ROS217_22272: 5-aminolevulinate synthase (EC 2.3.1.37) |
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5-aminolevulinate synthase (EC 2.3.1.37) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |