Regulon of PpsR in Loktanella vestfoldensis SKA53

Properties
Regulator type:	Transcription factor
TF locus tag:	SKA53_12013
Regulator family:	[Other]
Regulation mode:	repressor
Biological process:	Photosynthesis
Effector:	Blue light
Regulog:	PpsR - Rhodobacterales
Statistics of regulated genes:
- Genes	44
- Operons	10
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 74 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - [Other]
By effector - Blue light
By pathway - Photosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -71 Score: 4.5 Sequence: TGTATCGTTTGATTTACA Position: -45 Score: 5.2 Sequence: TGTAAACTAAAATAGACA Locus tag: SKA53_12318 Name: crtE Funciton: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) Locus tag: SKA53_12323 Name: crtF Funciton: Hydroxyneurosporene methyltransferase (EC 2.1.1.-)
	SKA53_12318	crtE	Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
	SKA53_12323	crtF	Hydroxyneurosporene methyltransferase (EC 2.1.1.-)
Position: -116 Score: 4 Sequence: TGTCAACATAAGCCCACA Position: -91 Score: 5.4 Sequence: TGTAAACCAAAGTTGACA Position: -35 Score: 5.5 Sequence: TGTCAGACTAAGTTGACA Locus tag: SKA53_12113 Name: crtA Funciton: Spheroidene monooxygenase Locus tag: SKA53_12108 Name: bchI Funciton: Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1) Locus tag: SKA53_12103 Name: bchD Funciton: Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1) Locus tag: SKA53_12098 Name: bchO Funciton: Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1)
	SKA53_12113	crtA	Spheroidene monooxygenase
	SKA53_12108	bchI	Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1)
	SKA53_12103	bchD	Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1)
	SKA53_12098	bchO	Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1)
Position: -46 Score: 5 Sequence: TGTAAATCAAACTGGACA Locus tag: SKA53_10144 Name: hcaR Funciton: 7-hydroxymethyl chlorophyll a reductase
	SKA53_10144	hcaR	7-hydroxymethyl chlorophyll a reductase
Position: -90 Score: 5.5 Sequence: TGTCAACTTAGTCTGACA Position: -34 Score: 5.4 Sequence: TGTCAACTTTGGTTTACA Position: -9 Score: 4 Sequence: TGTGGGCTTATGTTGACA Locus tag: SKA53_12118 Name: crtI Funciton: Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-) Locus tag: SKA53_12123 Name: crtB Funciton: Phytoene synthase (EC 2.5.1.32) Locus tag: SKA53_12128 Name: tspO Funciton: Regulatory protein TspO
	SKA53_12118	crtI	Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-)
	SKA53_12123	crtB	Phytoene synthase (EC 2.5.1.32)
	SKA53_12128	tspO	Regulatory protein TspO
Position: -192 Score: 5.5 Sequence: TGTCAAAGTAAATTGACA Position: -68 Score: 5.4 Sequence: TGTAAGTTAAAGTTGACA Locus tag: SKA53_12023 Name: bchF Funciton: 2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-) Locus tag: SKA53_12028 Name: bchN Funciton: Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-) Locus tag: SKA53_12033 Name: bchB Funciton: Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-) Locus tag: SKA53_12038 Name: bchH Funciton: Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1) Locus tag: SKA53_12043 Name: bchL Funciton: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-) Locus tag: SKA53_12048 Name: bchM Funciton: Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11) Locus tag: SKA53_12053 Name: pucC2 Funciton: Light-harvesting 1 (B870) complex assembly Locus tag: SKA53_12058 Name: puhA Funciton: Photosynthetic reaction center H subunit Locus tag: SKA53_12063 Name: RSP_0292 Funciton: Putative photosynthetic complex assembly protein Locus tag: SKA53_12068 Name: RSP_0293 Funciton: hypothetical protein Locus tag: SKA53_12073 Name: RSP_6110 Funciton: hypothetical protein Locus tag: SKA53_12078 Name: acsF Funciton: Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81) Locus tag: SKA53_12083 Name: RSP_0295 Funciton: hypothetical protein Locus tag: SKA53_12088 Name: hemA Funciton: 5-aminolevulinate synthase (EC 2.3.1.37)
	SKA53_12023	bchF	2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-)
	SKA53_12028	bchN	Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-)
	SKA53_12033	bchB	Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-)
	SKA53_12038	bchH	Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1)
	SKA53_12043	bchL	Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-)
	SKA53_12048	bchM	Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11)
	SKA53_12053	pucC2	Light-harvesting 1 (B870) complex assembly
	SKA53_12058	puhA	Photosynthetic reaction center H subunit
	SKA53_12063	RSP_0292	Putative photosynthetic complex assembly protein
	SKA53_12068	RSP_0293	hypothetical protein
	SKA53_12073	RSP_6110	hypothetical protein
	SKA53_12078	acsF	Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81)
	SKA53_12083	RSP_0295	hypothetical protein
	SKA53_12088	hemA	5-aminolevulinate synthase (EC 2.3.1.37)
Position: -233 Score: 5.5 Sequence: TGTCAATTTACTTTGACA Locus tag: SKA53_12018 Name: ppaA Funciton: PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation Locus tag: SKA53_12013 Name: ppsR Funciton: Regulator of carotenoid biosynthesis PpsR
	SKA53_12018	ppaA	PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation
	SKA53_12013	ppsR	Regulator of carotenoid biosynthesis PpsR
Position: -181 Score: 5.1 Sequence: TGTAAGGTAAAGTTTACA Position: -156 Score: 4.8 Sequence: TGTCTAAAAGAATTGACA Locus tag: SKA53_12328 Name: bchC Funciton: Chlorophyll synthesis pathway, bchC Locus tag: SKA53_12333 Name: bchX Funciton: Chlorophyllide reductase subunit BchX (EC 1.18.-.-) Locus tag: SKA53_12338 Name: null Funciton: hypothetical protein Locus tag: SKA53_12343 Name: bchY Funciton: Chlorophyllide reductase subunit BchY (EC 1.18.-.-) Locus tag: SKA53_12348 Name: bchZ Funciton: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-) Locus tag: SKA53_12353 Name: pufQ Funciton: Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes Locus tag: SKA53_12358 Name: pufB Funciton: Light-harvesting LHI, beta subunit Locus tag: SKA53_12363 Name: pufA Funciton: Light-harvesting LHI, alpha subunit Locus tag: SKA53_12368 Name: pufL Funciton: Photosynthetic reaction center L subunit Locus tag: SKA53_12373 Name: pufM Funciton: Photosynthetic reaction center M subunit Locus tag: SKA53_12378 Name: null Funciton: Protein PufX, involved in assembly of B875 and B800-850 pigment-protein complexes Locus tag: SKA53_12383 Name: dxsA Funciton: 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)
	SKA53_12328	bchC	Chlorophyll synthesis pathway, bchC
	SKA53_12333	bchX	Chlorophyllide reductase subunit BchX (EC 1.18.-.-)
	SKA53_12338		hypothetical protein
	SKA53_12343	bchY	Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
	SKA53_12348	bchZ	Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)
	SKA53_12353	pufQ	Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes
	SKA53_12358	pufB	Light-harvesting LHI, beta subunit
	SKA53_12363	pufA	Light-harvesting LHI, alpha subunit
	SKA53_12368	pufL	Photosynthetic reaction center L subunit
	SKA53_12373	pufM	Photosynthetic reaction center M subunit
	SKA53_12378		Protein PufX, involved in assembly of B875 and B800-850 pigment-protein complexes
	SKA53_12383	dxsA	1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)
Position: -55 Score: 5.2 Sequence: TGTAAGCTTTAGTTTACA Position: -20 Score: 5.1 Sequence: TGTCATCTTAGACTGACA Locus tag: SKA53_10604 Name: bchG Funciton: Bacteriochlorophyll/chlorophyll synthetase Locus tag: SKA53_10609 Name: pucC Funciton: Bacteriochlorophyll synthase 44.5 kDa chain Locus tag: SKA53_10614 Name: bchP Funciton: Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83)
	SKA53_10604	bchG	Bacteriochlorophyll/chlorophyll synthetase
	SKA53_10609	pucC	Bacteriochlorophyll synthase 44.5 kDa chain
	SKA53_10614	bchP	Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83)
Position: -61 Score: 5.2 Sequence: TGTCTATTTTAGTTTACA Position: -35 Score: 4.5 Sequence: TGTAAATCAAACGATACA Locus tag: SKA53_12313 Name: crtD Funciton: Methoxyneurosporene dehydrogenase (EC 1.14.99.-) Locus tag: SKA53_12308 Name: ctrC Funciton: Hydroxyneurosporene synthase
	SKA53_12313	crtD	Methoxyneurosporene dehydrogenase (EC 1.14.99.-)
	SKA53_12308	ctrC	Hydroxyneurosporene synthase
Position: -35 Score: 5.1 Sequence: TGTCAGGCCAGATTGACA Locus tag: SKA53_08216 Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
	SKA53_08216	hemC	Porphobilinogen deaminase (EC 2.5.1.61)

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of PpsR in Loktanella vestfoldensis SKA53

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --