Regulon of PpsR in Loktanella vestfoldensis SKA53
| Regulator type: | Transcription factor |
| TF locus tag: | SKA53_12013 |
| Regulator family: | [Other] |
| Regulation mode: | repressor |
| Biological process: | Photosynthesis |
| Effector: | Blue light |
| Regulog: | PpsR - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 44 |
| - Operons | 10 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - [Other]
- By effector - Blue light
- By pathway - Photosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -71
Score: 4.5 Sequence: TGTATCGTTTGATTTACA
Position: -45
Score: 5.2 Sequence: TGTAAACTAAAATAGACA
Locus tag: SKA53_12318
Name: crtE Funciton: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
Locus tag: SKA53_12323
Name: crtF Funciton: Hydroxyneurosporene methyltransferase (EC 2.1.1.-) |
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crtE
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Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
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crtF
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Hydroxyneurosporene methyltransferase (EC 2.1.1.-)
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Position: -116
Score: 4 Sequence: TGTCAACATAAGCCCACA
Position: -91
Score: 5.4 Sequence: TGTAAACCAAAGTTGACA
Position: -35
Score: 5.5 Sequence: TGTCAGACTAAGTTGACA
Locus tag: SKA53_12113
Name: crtA Funciton: Spheroidene monooxygenase
Locus tag: SKA53_12108
Name: bchI Funciton: Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1)
Locus tag: SKA53_12103
Name: bchD Funciton: Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1)
Locus tag: SKA53_12098
Name: bchO Funciton: Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1) |
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crtA
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Spheroidene monooxygenase
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bchI
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Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1)
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bchD
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Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1)
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bchO
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Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1)
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Position: -46
Score: 5 Sequence: TGTAAATCAAACTGGACA
Locus tag: SKA53_10144
Name: hcaR Funciton: 7-hydroxymethyl chlorophyll a reductase |
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hcaR
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7-hydroxymethyl chlorophyll a reductase
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Position: -90
Score: 5.5 Sequence: TGTCAACTTAGTCTGACA
Position: -34
Score: 5.4 Sequence: TGTCAACTTTGGTTTACA
Position: -9
Score: 4 Sequence: TGTGGGCTTATGTTGACA
Locus tag: SKA53_12118
Name: crtI Funciton: Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-)
Locus tag: SKA53_12123
Name: crtB Funciton: Phytoene synthase (EC 2.5.1.32)
Locus tag: SKA53_12128
Name: tspO Funciton: Regulatory protein TspO |
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crtI
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Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-)
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crtB
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Phytoene synthase (EC 2.5.1.32)
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tspO
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Regulatory protein TspO
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Position: -192
Score: 5.5 Sequence: TGTCAAAGTAAATTGACA
Position: -68
Score: 5.4 Sequence: TGTAAGTTAAAGTTGACA
Locus tag: SKA53_12023
Name: bchF Funciton: 2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-)
Locus tag: SKA53_12028
Name: bchN Funciton: Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-)
Locus tag: SKA53_12033
Name: bchB Funciton: Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-)
Locus tag: SKA53_12038
Name: bchH Funciton: Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1)
Locus tag: SKA53_12043
Name: bchL Funciton: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-)
Locus tag: SKA53_12048
Name: bchM Funciton: Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11)
Locus tag: SKA53_12053
Name: pucC2 Funciton: Light-harvesting 1 (B870) complex assembly
Locus tag: SKA53_12058
Name: puhA Funciton: Photosynthetic reaction center H subunit
Locus tag: SKA53_12063
Name: RSP_0292 Funciton: Putative photosynthetic complex assembly protein
Locus tag: SKA53_12068
Name: RSP_0293 Funciton: hypothetical protein
Locus tag: SKA53_12073
Name: RSP_6110 Funciton: hypothetical protein
Locus tag: SKA53_12078
Name: acsF Funciton: Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81)
Locus tag: SKA53_12083
Name: RSP_0295 Funciton: hypothetical protein
Locus tag: SKA53_12088
Name: hemA Funciton: 5-aminolevulinate synthase (EC 2.3.1.37) |
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bchF
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2-vinyl bacteriochlorophyllide hydratase BchF (EC 4.2.1.-)
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bchN
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Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-)
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bchB
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Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-)
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bchH
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Protoporphyrin IX Mg-chelatase subunit H (EC 6.6.1.1)
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bchL
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Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein ChlL (EC 1.18.-.-)
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bchM
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Mg-protoporphyrin O-methyltransferase (EC 2.1.1.11)
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pucC2
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Light-harvesting 1 (B870) complex assembly
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puhA
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Photosynthetic reaction center H subunit
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RSP_0292
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Putative photosynthetic complex assembly protein
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RSP_0293
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hypothetical protein
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RSP_6110
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hypothetical protein
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acsF
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Mg protoporphyrin IX monomethyl ester oxidative cyclase (aerobic) (EC 1.14.13.81)
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RSP_0295
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hypothetical protein
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hemA
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5-aminolevulinate synthase (EC 2.3.1.37)
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Position: -233
Score: 5.5 Sequence: TGTCAATTTACTTTGACA
Locus tag: SKA53_12018
Name: ppaA Funciton: PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation
Locus tag: SKA53_12013
Name: ppsR Funciton: Regulator of carotenoid biosynthesis PpsR |
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ppaA
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PpaA, heme-binding SCHIC domain sensory protein, regulator for photosystem formation
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ppsR
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Regulator of carotenoid biosynthesis PpsR
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Position: -181
Score: 5.1 Sequence: TGTAAGGTAAAGTTTACA
Position: -156
Score: 4.8 Sequence: TGTCTAAAAGAATTGACA
Locus tag: SKA53_12328
Name: bchC Funciton: Chlorophyll synthesis pathway, bchC
Locus tag: SKA53_12333
Name: bchX Funciton: Chlorophyllide reductase subunit BchX (EC 1.18.-.-)
Locus tag: SKA53_12338
Name: null Funciton: hypothetical protein
Locus tag: SKA53_12343
Name: bchY Funciton: Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
Locus tag: SKA53_12348
Name: bchZ Funciton: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)
Locus tag: SKA53_12353
Name: pufQ Funciton: Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes
Locus tag: SKA53_12358
Name: pufB Funciton: Light-harvesting LHI, beta subunit
Locus tag: SKA53_12363
Name: pufA Funciton: Light-harvesting LHI, alpha subunit
Locus tag: SKA53_12368
Name: pufL Funciton: Photosynthetic reaction center L subunit
Locus tag: SKA53_12373
Name: pufM Funciton: Photosynthetic reaction center M subunit
Locus tag: SKA53_12378
Name: null Funciton: Protein PufX, involved in assembly of B875 and B800-850 pigment-protein complexes
Locus tag: SKA53_12383
Name: dxsA Funciton: 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) |
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bchC
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Chlorophyll synthesis pathway, bchC
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bchX
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Chlorophyllide reductase subunit BchX (EC 1.18.-.-)
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hypothetical protein
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bchY
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Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
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bchZ
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Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)
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pufQ
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Protein PufQ, involved in assembly of B875 and B800-850 pigment-protein complexes
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pufB
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Light-harvesting LHI, beta subunit
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pufA
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Light-harvesting LHI, alpha subunit
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pufL
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Photosynthetic reaction center L subunit
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pufM
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Photosynthetic reaction center M subunit
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Protein PufX, involved in assembly of B875 and B800-850 pigment-protein complexes
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dxsA
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1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)
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Position: -55
Score: 5.2 Sequence: TGTAAGCTTTAGTTTACA
Position: -20
Score: 5.1 Sequence: TGTCATCTTAGACTGACA
Locus tag: SKA53_10604
Name: bchG Funciton: Bacteriochlorophyll/chlorophyll synthetase
Locus tag: SKA53_10609
Name: pucC Funciton: Bacteriochlorophyll synthase 44.5 kDa chain
Locus tag: SKA53_10614
Name: bchP Funciton: Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83) |
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bchG
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Bacteriochlorophyll/chlorophyll synthetase
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pucC
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Bacteriochlorophyll synthase 44.5 kDa chain
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bchP
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Geranylgeranyl hydrogenase BchP; Geranylgeranyl reductase (EC 1.3.1.83)
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Position: -61
Score: 5.2 Sequence: TGTCTATTTTAGTTTACA
Position: -35
Score: 4.5 Sequence: TGTAAATCAAACGATACA
Locus tag: SKA53_12313
Name: crtD Funciton: Methoxyneurosporene dehydrogenase (EC 1.14.99.-)
Locus tag: SKA53_12308
Name: ctrC Funciton: Hydroxyneurosporene synthase |
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crtD
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Methoxyneurosporene dehydrogenase (EC 1.14.99.-)
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ctrC
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Hydroxyneurosporene synthase
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Position: -35
Score: 5.1 Sequence: TGTCAGGCCAGATTGACA
Locus tag: SKA53_08216
Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61) |
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hemC
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Porphobilinogen deaminase (EC 2.5.1.61)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |