Propagation of Crp regulog to Shewanella baltica OS185

Reference regulog properties
Source regulog:	Crp - Shewanellaceae
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	repressor (activator)
Biological process:	Carbon catabolism
Effector:	Cyclic 3',5'-AMP
Phylum:	Proteobacteria
Propagated regulon:
Target genome	Shewanella baltica OS185
Orthologous TF(s)	Shew185_3747
Regulated genes	220

Built upon 2713 sites [see more]

Predicted regulatory interactions in *Shewanella baltica OS185*
	Locus tag	Position	Score	Sequence
Position: -210 Score: 3.7 Sequence: CTCTGTGCAGTGTATCACAAAG Locus tag: Shew185_0016
	Shew185_0016	-210	3.7	CTCTGTGCAGTGTATCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadB
Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Shewanella oneidensis MR-1	SO0021	-210	4.1	CTTTGTGCAGTGTATCACAAAG
Shewanella putrefaciens CN-32	Sputcn32_0013	-210	3.7	CTCTGTGCAGTGTATCACAAAG
Shewanella sp W3-18-1	Sputw3181_0013	-210	3.7	CTCTGTGCAGTGTATCACAAAG
Shewanella sp ANA-3	Shewana3_0024	-210	4.1	CTTTGTGCAGTGTATCACAAAG
Shewanella sp MR-4	Shewmr4_0018	-210	4.1	CTTTGTGCAGTGTATCACAAAG
Shewanella sp MR-7	Shewmr7_0016	-210	4.1	CTTTGTGCAGTGTATCACAAAG
Shewanella baltica OS155	Sbal_0021	-210	3.7	CTCTGTGCAGTGTATCACAAAG
Shewanella amazonensis SB2B	Sama_0032	-193	3.8	TGCTGTGCAGTGTATCACAAAG
Shewanella pealeana ATCC 700345	Spea_0018	-134	4.6	TTTTGTGATTCGTCGCACACTG
Shewanella halifaxensis HAW-EB4	Shal_0016	-134	4.4	TTTTGTGATTAGTCGCACACTG
Shewanella piezotolerans WP3	swp_0035	-127	4.4	TTATGTGATTAGTCGCACACTG

Position: -302 Score: 4.2 Sequence: CTTTGTGATACACTGCACAGAG Locus tag: Shew185_0017
	Shew185_0017	-302	4.2	CTTTGTGATACACTGCACAGAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepQ
Ortholog function: Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
Shewanella oneidensis MR-1	SO0022	-237	4.4	CTTTGTGATACACTGCACAAAG
Shewanella putrefaciens CN-32	Sputcn32_0014	-302	4.2	CTTTGTGATACACTGCACAGAG
Shewanella sp W3-18-1	Sputw3181_0014	-302	4.2	CTTTGTGATACACTGCACAGAG
Shewanella sp ANA-3	Shewana3_0025	-255	4.4	CTTTGTGATACACTGCACAAAG
Shewanella sp MR-4	Shewmr4_0019	-255	4.4	CTTTGTGATACACTGCACAAAG
Shewanella sp MR-7	Shewmr7_0017	-255	4.4	CTTTGTGATACACTGCACAAAG
Shewanella baltica OS155	Sbal_0022	-302	4.2	CTTTGTGATACACTGCACAGAG
Shewanella amazonensis SB2B	Sama_0033	-109	4	CTTTGTGATACACTGCACAGCA
Shewanella pealeana ATCC 700345	Spea_0019	-252	4.1	CAGTGTGCGACGAATCACAAAA
Shewanella halifaxensis HAW-EB4	Shal_0017	-250	4	CAGTGTGCGACTAATCACAAAA
Shewanella sediminis HAW-EB3	Ssed_0024	-48	3.8	TTTTCTGATAGATTTTACATCA

Position: -57 Score: 4.6 Sequence: AACTGTGATGCAGATCACTTAC Locus tag: Shew185_0078
	Shew185_0078	-57	4.6	AACTGTGATGCAGATCACTTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sbal_4271
Ortholog function: membrane protein, HPP family
Shewanella putrefaciens CN-32	Sputcn32_0064	-57	4.6	AACCGTGATGCAGATCACTTAT
Shewanella sp ANA-3	Shewana3_0083	-54	4.9	AAACGTGATGCGGATCACTTAT
Shewanella sp MR-4	Shewmr4_0081	-53	5	AAATGTGACGCGGATCACTTAT
Shewanella sp MR-7	Shewmr7_0079	-53	5	AAATGTGACGCGGATCACTTAT
Shewanella baltica OS155	Sbal_4271	-57	4.6	AACTGTGATGCAGATCACTTAC

Position: -177 Score: 4.1 Sequence: TTATGTGAGCTAGCTTGTATTT Locus tag: Shew185_0096
	Shew185_0096	-177	4.1	TTATGTGAGCTAGCTTGTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutC
Ortholog function: histidine utilization repressor
Shewanella oneidensis MR-1	SO0096	-151	4.1	TTATGTGAGCTAGCTTGTATTT
Shewanella putrefaciens CN-32	Sputcn32_0078	-178	4.1	TTATGTGAGCTGGCTTGTATTT
Shewanella sp W3-18-1	Sputw3181_3999	-178	4.1	TTATGTGAGCTGGCTTGTATTT
Shewanella sp ANA-3	Shewana3_0099	-142	4.1	TTATGTGAGCTAGCTTGTATTT
Shewanella sp MR-4	Shewmr4_0098	-142	4.1	TTATGTGAGCCAGCTTGTATTT
Shewanella sp MR-7	Shewmr7_0093	-142	4.1	TTATGTGAGCTAGCTTGTATTT
Shewanella baltica OS155	Sbal_4253	-177	4.1	TTATGTGAGCTAGCTTGTATTT
Shewanella loihica PV-4	Shew_3758	-138	4.1	TTATGTGAGCTAGCTTGTATTT
Shewanella pealeana ATCC 700345	Spea_4170	-106	3.8	ATTTGTGAGCTAGCTTGTGTTT
Shewanella halifaxensis HAW-EB4	Shal_0072	-106	3.9	ATTTGTGAGCCCGCTTGTATTT
Shewanella piezotolerans WP3	swp_0132	-177	4.2	ATTTGTGAGCTAGCTTGTATTT
Shewanella sediminis HAW-EB3	Ssed_4448	-150	4.1	AGTTGTGATCCAACTTGTATTT
Shewanella woodyi ATCC 51908	Swoo_4839	-201	4.1	AAGTGTGATCCAACTTGTATTT

Position: -160 Score: 4.2 Sequence: TTTCGTGACCTAGATTAGATAT Locus tag: Shew185_0133
	Shew185_0133	-160	4.2	TTTCGTGACCTAGATTAGATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0141
Ortholog function: sensory box/GGDEF family protein
Shewanella oneidensis MR-1	SO0141	-161	4.1	TTTCGTGAGCTAGATTAGATAT
Shewanella putrefaciens CN-32	Sputcn32_0133	-174	4.2	TTTCGTGACCTAGATTAGATAT
Shewanella sp W3-18-1	Sputw3181_3939	-174	4.2	TTTCGTGACCTAGATTAGATAT
Shewanella sp ANA-3	Shewana3_0133	-163	4.1	TTTCGTGAGCTAGATTAGATAT
Shewanella sp MR-4	Shewmr4_0134	-161	4.1	TTTCGTGAGCTAGATTAGATAT
Shewanella sp MR-7	Shewmr7_0128	-161	4.1	TTTCGTGAGCTAGATTAGATAT
Shewanella baltica OS155	Sbal_4220	-160	4.2	TTTCGTGACCTAGATTAGATAT
Shewanella baltica OS155	Sbal_4221	-160	4.2	TTTCGTGACCTAGATTAGATAT
Shewanella amazonensis SB2B	Sama_0142	-137	4.6	TTTTGTGATGTGGATTAGAAAT
Shewanella loihica PV-4	Shew_0041	-55	4	TTTCGTGACCTAGATTAGACTT
Shewanella piezotolerans WP3	swp_0168	-156	4	ATTCGTGACCTAGATTAGACTT
Shewanella sediminis HAW-EB3	Ssed_4373	-198	3.7	ATCATTGATAAATATAACAAAA
Shewanella woodyi ATCC 51908	Swoo_4765	-240	4	AATCGTGACTTAGATTAGACTT

Position: -212 Score: 4.4 Sequence: TTTTGTGATTAGAATCTCAACA Locus tag: Shew185_0228
	Shew185_0228	-212	4.4	TTTTGTGATTAGAATCTCAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Shewanella oneidensis MR-1	SO0263	-222	4.2	TTTTGTGATTAGAATCTCAGCA
Shewanella putrefaciens CN-32	Sputcn32_3727	-213	3.9	TTTTGTGATTAGAATCTCAGCG
Shewanella sp W3-18-1	Sputw3181_0188	-213	3.9	TTTTGTGATTAGAATCTCAGCG
Shewanella sp ANA-3	Shewana3_0231	-222	4.2	TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-4	Shewmr4_0231	-222	4.2	TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-7	Shewmr7_0226	-222	3.9	TTTTGTGATTAGAATCTCAGCG
Shewanella baltica OS155	Sbal_0228	-212	4.4	TTTTGTGATTAGAATCTCAACA
Shewanella denitrificans OS217	Sden_3569	-186	4	TTTTGTGATAAGCCTCCCAGCT
Shewanella frigidimarina NCIMB 400	Sfri_0179	-213	4.2	TTTTGTGATAACAATCTCAGCT
Shewanella amazonensis SB2B	Sama_0245	-207	3.8	TTTTGTGAGTTCCCTCCCAGCT
Shewanella loihica PV-4	Shew_0190	-223	4.8	TTTTGTGATTAATATCAGAATT
Shewanella pealeana ATCC 700345	Spea_0215	-212	4.1	TTTTGTGATATTAATCTCGCCA
		-112	3.8	ATATTCGAACTACATCAAATTG
Shewanella halifaxensis HAW-EB4	Shal_4104	-212	3.9	TTTTGTGACATAAACCGTACTA
		-112	3.8	ATATTCGAACTACATCAAATTG
Shewanella piezotolerans WP3	swp_2043	-212	5	ATTTGTGATTTAAATCGCGTTA
		-112	3.8	ATATTCGAACTACATCAAATTG
Shewanella sediminis HAW-EB3	Ssed_4287	-223	4.5	TTTTGTGATTTCAATCAAAGCT
Shewanella woodyi ATCC 51908	Swoo_4659	-224	4.2	TTTTATGACTTTAATCAAAGTA

Position: -228 Score: 3.9 Sequence: CAATATGATGTGGTTCCAATAA Position: -128 Score: 4.5 Sequence: TGTTGAGATTCTAATCACAAAA Locus tag: Shew185_0229
	Shew185_0229	-228	3.9	CAATATGATGTGGTTCCAATAA
		-128	4.5	TGTTGAGATTCTAATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: scyA
Ortholog function: cytochrome c-type protein
Shewanella oneidensis MR-1	SO0264	-234	4	CAATTTGATATGGTTCCAATAA
		-125	4.1	TGCTGAGATTCTAATCACAAAA
Shewanella putrefaciens CN-32	Sputcn32_3726	-229	4	CAATTTGATGTGGTTCCAATAA
		-129	3.7	CGCTGAGATTCTAATCACAAAA
Shewanella sp W3-18-1	Sputw3181_0189	-229	4	CAATTTGATGTGGTTCCAATAA
		-129	3.7	CGCTGAGATTCTAATCACAAAA
Shewanella sp ANA-3	Shewana3_0232	-234	4	CAATTTGATGTGGTTCCAATAA
		-125	4.1	TGCTGAGATTCTAATCACAAAA
Shewanella sp MR-4	Shewmr4_0232	-234	4	CAATTTGATGTGGTTCCAATAA
		-125	4.1	TGCTGAGATTCTAATCACAAAA
Shewanella sp MR-7	Shewmr7_0227	-234	4	CAATTTGATGTGGTTCCAATAA
		-125	3.7	CGCTGAGATTCTAATCACAAAA
Shewanella baltica OS155	Sbal_0229	-228	3.9	CAATATGATGTGGTTCCAATAA
		-128	4.5	TGTTGAGATTCTAATCACAAAA
Shewanella denitrificans OS217	Sden_3568	-131	3.8	AGCTGGGAGGCTTATCACAAAA
		-109	4.1	AGGTGTGATTTTATTAACTTTA
Shewanella frigidimarina NCIMB 400	Sfri_0180	-233	3.9	CAATTTGATATGGTTCCAAAAT
		-133	4.1	AGCTGAGATTGTTATCACAAAA
Shewanella amazonensis SB2B	Sama_0246	-225	4	CAATTTGATGCAGTTCCAATAA
Shewanella loihica PV-4	Shew_0191	-242	3.8	CAATTTGATATGCTTCCAAAAA
		-131	4.8	AATTCTGATATTAATCACAAAA
Shewanella pealeana ATCC 700345	Spea_0216	-230	4.4	CAATTTGATGTAGTTCGAATAT
		-130	4	TGGCGAGATTAATATCACAAAA
Shewanella halifaxensis HAW-EB4	Shal_4103	-230	4.4	CAATTTGATGTAGTTCGAATAT
Shewanella piezotolerans WP3	swp_2044	-231	4.4	CAATTTGATGTAGTTCGAATAT
		-131	4.8	TAACGCGATTTAAATCACAAAT
Shewanella sediminis HAW-EB3	Ssed_4286	-145	4.4	AGCTTTGATTGAAATCACAAAA
Shewanella woodyi ATCC 51908	Swoo_4658	-256	3.8	CAATTTGATATGCTTCCAAAAA
		-144	3.9	TACTTTGATTAAAGTCATAAAA

Position: -170 Score: 4.4 Sequence: ATCTGTGACAGTCCTCACCTAA Locus tag: Shew185_0276
	Shew185_0276	-170	4.4	ATCTGTGACAGTCCTCACCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfD
Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Shewanella oneidensis MR-1	SO4453	-171	4.3	ATCTGTGACAGTGCTCACCCAA
Shewanella putrefaciens CN-32	Sputcn32_0388	-171	4.2	ATCTGTGACAGTCCTCACCCAA
Shewanella sp W3-18-1	Sputw3181_0242	-171	4.2	ATCTGTGACAGTCCTCACCCAA
Shewanella sp ANA-3	Shewana3_0273	-175	4.3	ATCTGTGACAGTGCTCACCCAA
Shewanella sp MR-4	Shewmr4_0272	-175	4.3	AACTGTGACAGCGCTCACCCAA
Shewanella sp MR-7	Shewmr7_3749	-175	4.3	AACTGTGACAGCGCTCACCCAA
Shewanella baltica OS155	Sbal_0283	-170	4.4	ATCTGTGACAGTCCTCACCTAA
Shewanella denitrificans OS217	Sden_0100	-130	4.6	TTTTGTGACACAGCTCACCTCA
Shewanella frigidimarina NCIMB 400	Sfri_0081	-159	4.7	ATTTGTGACTCGACTCACGCTA
Shewanella amazonensis SB2B	Sama_3523	-157	4.3	AATTGTGACGCCGCTCACTCAG
Shewanella loihica PV-4	Shew_0086	-148	4.5	TAATGTGACACCGCTCACGAAG
Shewanella pealeana ATCC 700345	Spea_4121	-181	4.1	TTTTGTGACAGTTATCACGGCA
Shewanella halifaxensis HAW-EB4	Shal_0121	-180	4.2	TTTTGTGACAGTTATCACGCCA
Shewanella piezotolerans WP3	swp_5010	-176	4.4	TTTTGTGACACTAATCACCTCA
Shewanella sediminis HAW-EB3	Ssed_4403	-150	4.8	TTTTGTGACACCCCTCACATAC
Shewanella woodyi ATCC 51908	Swoo_4794	-135	4.7	TTTTGTGACGACACTCACATTC

Position: -187 Score: 4 Sequence: TTAGGTGAGGACTGTCACAGAT Position: -156 Score: 3.7 Sequence: TAGCGTGATCTAGGTTAATAAA Locus tag: Shew185_0277
	Shew185_0277	-187	4	TTAGGTGAGGACTGTCACAGAT
		-156	3.7	TAGCGTGATCTAGGTTAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: molybdenum cofactor biosynthesis protein MoaA
Shewanella oneidensis MR-1	SO4452	-220	3.8	TTGGGTGAGCACTGTCACAGAT
Shewanella putrefaciens CN-32	Sputcn32_0389	-187	3.8	TTGGGTGAGGACTGTCACAGAT
Shewanella sp W3-18-1	Sputw3181_0243	-187	3.8	TTGGGTGAGGACTGTCACAGAT
Shewanella sp ANA-3	Shewana3_0274	-187	3.8	TTGGGTGAGCACTGTCACAGAT
Shewanella sp MR-4	Shewmr4_0273	-187	3.9	TTGGGTGAGCGCTGTCACAGTT
Shewanella sp MR-7	Shewmr7_3748	-187	3.9	TTGGGTGAGCGCTGTCACAGTT
Shewanella baltica OS155	Sbal_0284	-187	4	TTAGGTGAGGACTGTCACAGAT
Shewanella denitrificans OS217	Sden_0101	-186	4.3	TGAGGTGAGCTGTGTCACAAAA
Shewanella frigidimarina NCIMB 400	Sfri_0082	-186	4.5	TAGCGTGAGTCGAGTCACAAAT
Shewanella amazonensis SB2B	Sama_3524	-180	4	CTGAGTGAGCGGCGTCACAATT
Shewanella loihica PV-4	Shew_0087	-189	4.4	CTTCGTGAGCGGTGTCACATTA
Shewanella pealeana ATCC 700345	Spea_4120	-222	4.1	TGCCGTGATAACTGTCACAAAA
Shewanella halifaxensis HAW-EB4	Shal_0122	-222	4.3	TGGCGTGATAACTGTCACAAAA
Shewanella piezotolerans WP3	swp_5009	-222	4.3	TGAGGTGATTAGTGTCACAAAA
Shewanella sediminis HAW-EB3	Ssed_4402	-221	4.4	GTATGTGAGGGGTGTCACAAAA
Shewanella woodyi ATCC 51908	Swoo_4793	-222	4.3	GAATGTGAGTGTCGTCACAAAA

Position: -73 Score: 3.8 Sequence: CTATTTGCGCGGGCTCACAAAA Locus tag: Shew185_0349
	Shew185_0349	-73	3.8	CTATTTGCGCGGGCTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0355
Ortholog function: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella oneidensis MR-1	SO0355	-84	4.4	TTATTTGCGCTACATCACAAAA
Shewanella putrefaciens CN-32	Sputcn32_3634	-84	3.8	CTATTTGCGCAGCATCACAAAA
		-45	3.9	TAAAGTGATGGGGTAAAAATAA
Shewanella sp W3-18-1	Sputw3181_3774	-84	3.8	CTATTTGCGCAGCATCACAAAA
		-45	3.9	TAAAGTGATGGGGTAAAAATAA
Shewanella baltica OS155	Sbal_0351	-73	3.8	CTATTTGCGCGGGCTCACAAAA
Shewanella frigidimarina NCIMB 400	Sfri_0361	-51	4.3	TTGTGTTACCTAGCACACATAT
Shewanella pealeana ATCC 700345	Spea_3882	-124	4.3	AAGTTTGTCTTAGATCACATTT
Shewanella halifaxensis HAW-EB4	Shal_0387	-124	4.3	AAGTTTGTCTTAGATCACATTT
Shewanella piezotolerans WP3	swp_0315	-127	3.9	AAAGTTGTCATAGATCACATTT
Shewanella sediminis HAW-EB3	Ssed_0331	-110	3.9	GAATTTGTCATAGATCACATTT

Position: -176 Score: 4.3 Sequence: ATAAGTGATCGATTCCACAGAA Locus tag: Shew185_0384
	Shew185_0384	-176	4.3	ATAAGTGATCGATTCCACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4240
Ortholog function: tetratricopeptide domain protein precursor
Shewanella putrefaciens CN-32	Sputcn32_0470	-176	4.2	ATTAGTGATCGTTCCCACAGAA
Shewanella sp W3-18-1	Sputw3181_0373	-175	4.2	ATTAGTGATCGCTCCCACAGAA
Shewanella baltica OS155	Sbal_0385	-176	4.3	ATAAGTGATCGATTCCACAGAA

Position: -201 Score: 4.3 Sequence: AATGGTGATATTGGTCACTAAA Locus tag: Shew185_0389
	Shew185_0389	-201	4.3	AATGGTGATATTGGTCACTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4232
Ortholog function: long-chain fatty acid transport protein
Shewanella oneidensis MR-1	SO4232	-202	4.4	AAAAGTGATTTTCGTCACTAAA
Shewanella putrefaciens CN-32	Sputcn32_0475	-195	4.6	AAAAGTGATTTTTATCACTAAA
Shewanella sp W3-18-1	Sputw3181_0378	-195	4.6	AAAAGTGATTTTTATCACTAAA
Shewanella sp ANA-3	Shewana3_3757	-201	4.6	AAAAGTGATTTATCTCACTAAA
Shewanella sp MR-4	Shewmr4_3584	-201	4.6	AAAAGTGATTTATCTCACTAAA
Shewanella sp MR-7	Shewmr7_0372	-201	4.6	AAAAGTGATTTATCTCACTAAA
Shewanella baltica OS155	Sbal_0390	-207	4.3	AATGGTGATATTGGTCACTAAA
Shewanella frigidimarina NCIMB 400	Sfri_3816	-169	4.9	AAGTTTGATCATGATCACAATT
Shewanella pealeana ATCC 700345	Spea_3824	-164	3.8	AAGTGTGATCTACTCTGTATTT
Shewanella halifaxensis HAW-EB4	Shal_0442	-114	3.8	TTTTGTGCTGTTTTTTATAAAG

Position: -9 Score: 4.3 Sequence: TAATTTGATATGTATCATTTAA Locus tag: Shew185_0453
	Shew185_0453	-9	4.3	TAATTTGATATGTATCATTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4154
Ortholog function: transcriptional regulator, LysR family
Shewanella oneidensis MR-1	SO4154	-69	3.7	AATTGTGCATTAGTTAATCTAT
		-9	4.9	TAATTTGATATGTATCATATAA
Shewanella sp ANA-3	Shewana3_3695	-9	4.3	TAATTTGATATGTACCATATAA
Shewanella loihica PV-4	Shew_0506	-30	3.9	TATTGAAATCATTTTCAAAAAA
		-9	4	ATTTTTGATATGTATCATCTCA
Shewanella piezotolerans WP3	swp_4588	-9	4.4	ATATTTGATATGTACCACCTTA
Shewanella sediminis HAW-EB3	Ssed_4064	-9	4.4	ATATTTGATATGTATCACCTCA
Shewanella woodyi ATCC 51908	Swoo_0591	-9	4.2	ATTTTTGACATGTATCACCTCA

Position: -120 Score: 4 Sequence: GGAAGTGATGCACCTCAAATTT Locus tag: Shew185_0460
	Shew185_0460	-120	4	GGAAGTGATGCACCTCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4142
Ortholog function: cytochrome c family protein
Shewanella oneidensis MR-1	SO4142	-121	3.9	GAAAGTGACACACCTCAAATAA
Shewanella sp ANA-3	Shewana3_3688	-118	4.2	GAAAGTGATACACCTCAAATAA
Shewanella sp MR-4	Shewmr4_3511	-118	4.2	GAAAGTGATACACCTCAAATAA
Shewanella sp MR-7	Shewmr7_0441	-122	4	GAAGGTGATACACCTCAAATAA
Shewanella frigidimarina NCIMB 400	Sfri_3554	-112	4	GGATATGATCTACTTCAAATTA
Shewanella amazonensis SB2B	Sama_3178	-268	3.9	AAACGTCACATAGATCACACAC
Shewanella loihica PV-4	Shew_0516	-113	4.1	GAAGGTGATCAACATCAAATTT
Shewanella halifaxensis HAW-EB4	Shal_0616	-289	3.8	AAGTGTGATCTAGATCTGTTAC
Shewanella piezotolerans WP3	swp_4577	-133	4	GAAAGTGATCGAGCTCAACTAT
Shewanella sediminis HAW-EB3	Ssed_4058	-112	4.7	AAAGGTGATCAACATCAAATTT

Position: -95 Score: 4.5 Sequence: TTACATGATACGCTTCACACAT Locus tag: Shew185_0463
	Shew185_0463	-95	4.5	TTACATGATACGCTTCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0539
Ortholog function: mechanosensitive ion channel
Shewanella putrefaciens CN-32	Sputcn32_0539	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella putrefaciens CN-32	Sputcn32_0539	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp W3-18-1	Sputw3181_3633	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp W3-18-1	Sputw3181_3633	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp ANA-3	Shewana3_3684	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp ANA-3	Shewana3_3684	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp MR-4	Shewmr4_3509	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp MR-4	Shewmr4_3509	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp MR-7	Shewmr7_0443	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp MR-7	Shewmr7_0443	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella baltica OS155	Sbal_3856	-95	4.5	TTACATGATACGCTTCACACAT
Shewanella baltica OS155	Sbal_3856	-95	4.5	TTACATGATACGCTTCACACAT
Shewanella loihica PV-4	Shew_3394	-144	4.1	TTGCTTGATATGCTTCACGCTA
Shewanella loihica PV-4	Shew_3394	-144	4.1	TTGCTTGATATGCTTCACGCTA
Shewanella pealeana ATCC 700345	Spea_0457	-138	4.1	AAGCTTGATCCTCTTCACGCTA
Shewanella pealeana ATCC 700345	Spea_0457	-138	4.1	AAGCTTGATCCTCTTCACGCTA
Shewanella halifaxensis HAW-EB4	Shal_0532	-137	4	AAGCATGATCCCCTTCACGCTA
Shewanella halifaxensis HAW-EB4	Shal_0532	-137	4	AAGCATGATCCCCTTCACGCTA
Shewanella sediminis HAW-EB3	Ssed_0457	-154	4.2	ATTCATGATCCACTTCACCTAG
Shewanella sediminis HAW-EB3	Ssed_0457	-154	4.2	ATTCATGATCCACTTCACCTAG
Shewanella woodyi ATCC 51908	Swoo_4512	-127	3.9	ATTCATGATCCTCTTCACGCAG
Shewanella woodyi ATCC 51908	Swoo_4512	-127	3.9	ATTCATGATCCTCTTCACGCAG

Position: -97 Score: 4.3 Sequence: ATGTGTGAAGCGTATCATGTAA Locus tag: Shew185_0464
	Shew185_0464	-97	4.3	ATGTGTGAAGCGTATCATGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4138
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO4138	-96	4.2	CATTGTGAAGCGTATCATGTAA
Shewanella putrefaciens CN-32	Sputcn32_0540	-97	4.2	CATTGTGAAGCGTATCATGTAA
Shewanella sp W3-18-1	Sputw3181_3632	-97	4.2	CATTGTGAAGCGTATCATGTAA
Shewanella sp ANA-3	Shewana3_3683	-96	4.2	CATTGTGAAGCGTATCATGTAA
Shewanella sp MR-4	Shewmr4_3508	-96	4.2	CATTGTGAAGCGTATCATGTAA
Shewanella sp MR-7	Shewmr7_0444	-96	4.2	CATTGTGAAGCGTATCATGTAA
Shewanella baltica OS155	Sbal_3855	-97	4.3	ATGTGTGAAGCGTATCATGTAA
Shewanella loihica PV-4	Shew_3393	-109	3.9	TAGCGTGAAGCATATCAAGCAA
Shewanella pealeana ATCC 700345	Spea_0458	-96	3.8	TAGCGTGAAGAGGATCAAGCTT
Shewanella halifaxensis HAW-EB4	Shal_0533	-96	3.8	TAGCGTGAAGGGGATCATGCTT

Position: -92 Score: 5 Sequence: AAAGGTGATCTAAGTCACATTT Locus tag: Shew185_0466
	Shew185_0466	-92	5	AAAGGTGATCTAAGTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4134
Ortholog function: Protein of unknown function DUF465
Shewanella oneidensis MR-1	SO4134	-91	4.7	AATATTGATCCAGATCACGTTT
Shewanella putrefaciens CN-32	Sputcn32_0542	-89	4.7	AATATTGATCTAAGTCACAATT
Shewanella sp W3-18-1	Sputw3181_3630	-89	4.7	AATATTGATCTAAGTCACAATT
Shewanella sp ANA-3	Shewana3_3681	-91	4.6	AATATTGATCCATATCACGTTT
Shewanella sp MR-4	Shewmr4_3506	-205	4	AAGTGTGAGCCAGATCTAACTC
		-91	4.6	AATATTGATCCAAATCACGTTT
Shewanella sp MR-7	Shewmr7_0446	-205	4	AAGTGTGAGCCAGATCTAACTC
		-91	4.6	AATATTGATCCAAATCACGTTT
Shewanella baltica OS155	Sbal_3853	-206	3.8	AAGTGTGAACCAGATCCTAATC
		-92	5	AAGAGTGATCTAAGTCACATTT
Shewanella frigidimarina NCIMB 400	Sfri_3404	-219	4.7	TAACGTGATTTACATCAAGTTA
		-81	3.8	CATTGTTATTGGAATAACATCT
Shewanella amazonensis SB2B	Sama_0411	-89	4.5	CTTAGTGATCCGGATCACTTTT
Shewanella pealeana ATCC 700345	Spea_0459	-99	4.9	CTATTTGATCGATATCACATTT
Shewanella halifaxensis HAW-EB4	Shal_0534	-97	4.6	CAATTTGATCGATATCACGTTT
Shewanella piezotolerans WP3	swp_4703	-306	4	TAAGGTTAACCTGATCACACTT
		-88	4.8	AAACATGATCTAACTCACAAAT

Position: -343 Score: 5.3 Sequence: AAATGTGACTTAGATCACCTTT Position: -229 Score: 3.8 Sequence: GATTAGGATCTGGTTCACACTT Position: -92 Score: 4.1 Sequence: TTCTGTGATCAAGTTAACCTTC Locus tag: Shew185_0467
	Shew185_0467	-343	5.3	AAATGTGACTTAGATCACCTTT
		-229	3.8	GATTAGGATCTGGTTCACACTT
		-92	4.1	TTCTGTGATCAAGTTAACCTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Shewanella oneidensis MR-1	SO4133	-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella putrefaciens CN-32	Sputcn32_0543	-230	4.4	AAGTTAGATCTGGTTCACACTT
		-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella sp W3-18-1	Sputw3181_3629	-230	4.4	AAGTTAGATCTGGTTCACACTT
		-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella sp ANA-3	Shewana3_3680	-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-4	Shewmr4_3505	-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-7	Shewmr7_0447	-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella baltica OS155	Sbal_3852	-229	3.8	GATTAGGATCTGGTTCACACTT
		-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella denitrificans OS217	Sden_3074	-92	4.4	AACTGTGATGAAGTTAACCAAA
Shewanella frigidimarina NCIMB 400	Sfri_3403	-244	4.7	TAACTTGATGTAAATCACGTTA
		-92	4.8	ATATGTGATCAAGTTAACCTTA
Shewanella amazonensis SB2B	Sama_0412	-92	4.7	ATTCGTGATCCAGTTAACCTTA
Shewanella loihica PV-4	Shew_3390	-92	4.6	AAGTGTGATCAGGTTAACCTTA
Shewanella pealeana ATCC 700345	Spea_0460	-92	4.7	AAGTGTGATCGGCTTAACCTTT
Shewanella halifaxensis HAW-EB4	Shal_0535	-92	4.6	AAGTGTGATCAGTTTAACCTTT
Shewanella piezotolerans WP3	swp_4702	-310	4.7	ATTTGTGAGTTAGATCATGTTT
		-92	4.6	AAGTGTGATCAGGTTAACCTTA
Shewanella sediminis HAW-EB3	Ssed_0461	-92	4.7	AAGTGTGATCGAGCTAACCTTT
Shewanella sediminis HAW-EB3	Ssed_2504	-84	3.9	CAATGTAATATGCAAAACATTT
Shewanella woodyi ATCC 51908	Swoo_4509	-272	4.9	AAATGTGATGTGGGTCAACAAA
		-92	4.7	AAGTGTGATCAAGTTAACCTTA

Position: -198 Score: 4.2 Sequence: TTATGTGATTTTGACAACAACA Position: -157 Score: 3.8 Sequence: AAATGTAAATTTTTGCATATAT Locus tag: Shew185_0468
	Shew185_0468	-198	4.2	TTATGTGATTTTGACAACAACA
		-157	3.8	AAATGTAAATTTTTGCATATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4131
Ortholog function: nucleoside-binding outer membrane protein
Shewanella oneidensis MR-1	SO4131	-199	4.1	TTATGTGATTTTCACAACAACA
		-157	3.8	AATTGTAAATTTTTGCATATAT
Shewanella putrefaciens CN-32	Sputcn32_0544	-198	4.2	TTATGTGATTTTGACAACAACA
		-157	4.4	AAATGTGAATTTTTGCATATAT
Shewanella sp W3-18-1	Sputw3181_3628	-198	4.2	TTATGTGATTTTGACAACAACA
		-157	4.4	AAATGTGAATTTTTGCATATAT
Shewanella sp ANA-3	Shewana3_3679	-199	4.1	TTATGTGATTTTCACAACAACA
		-157	3.8	AATTGTAAATTTTTGCATATAT
Shewanella sp MR-4	Shewmr4_3504	-199	4.1	TTATGTGATTTTCACAACAACA
		-157	3.8	AATTGTAAATTTTTGCATATAT
Shewanella sp MR-7	Shewmr7_0448	-199	4.1	TTATGTGATTTTCACAACAACA
		-157	3.8	AATTGTAAATTTTTGCATATAT
Shewanella baltica OS155	Sbal_3851	-198	4.2	TTATGTGATTTTGACAACAACA
		-157	3.8	AAATGTAAATTTTTGCATATAT
Shewanella denitrificans OS217	Sden_3073	-165	3.8	ATATGTCAACAATTTCATATTT
Shewanella frigidimarina NCIMB 400	Sfri_3402	-287	3.7	CATAGTGATATTCGTTAAAATT
		-243	3.7	CTTTATGCGTTGCATCACACTA
Shewanella loihica PV-4	Shew_3389	-217	3.9	AAATGTGACACAGGCAACAAAC

Position: -90 Score: 4.3 Sequence: TTAATTGACCTAGATCAAACTT Locus tag: Shew185_0472
	Shew185_0472	-90	4.3	TTAATTGACCTAGATCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4126
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO4126	-92	4.1	TTAATTGACCTAAATCAAACTT
Shewanella putrefaciens CN-32	Sputcn32_0548	-90	4.6	TAATTTGACCTAGATCAAAGTT
Shewanella sp W3-18-1	Sputw3181_3624	-90	4.6	TAATTTGACCTAGATCAAAGTT
Shewanella sp ANA-3	Shewana3_3675	-93	4.3	TTAATTGACCTAGATCAAACTT
Shewanella sp MR-4	Shewmr4_3498	-187	4.2	AACATTGAACTAGATCACAATT
		-93	4.3	TTAATTGACCTAGATCAAACTT
Shewanella sp MR-7	Shewmr7_0454	-187	4.2	AACATTGAACTAGATCACAATT
		-93	4.3	TTAATTGACCTAGATCAAACTT
Shewanella baltica OS155	Sbal_3847	-90	4.3	TTAATTGACCTAGATCAAACTT

Position: -314 Score: 4.2 Sequence: TATTGTAATTTAACCAACATTT Locus tag: Shew185_0478
	Shew185_0478	-314	4.2	TATTGTAATTTAACCAACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4118
Ortholog function: NADP-dependent malic enzyme (EC 1.1.1.40)
Shewanella oneidensis MR-1	SO4118	-318	4.4	TATTGTAATTTAGTCAACATTT
		-132	4.3	AAATGTGACCTAATTGACGTAT
Shewanella putrefaciens CN-32	Sputcn32_0554	-313	4	TATTGTAATTTAGCCAAAATTT
		-114	3.8	GAATATGACAGGTTTCACGTTT
Shewanella sp W3-18-1	Sputw3181_3618	-313	4	TATTGTAATTTAGCCAAAATTT
		-114	3.8	GAATATGACAGGTTTCACGTTT
Shewanella sp ANA-3	Shewana3_3669	-312	4.2	TATTGTAATTTAATCAACATTT
		-119	4.2	GGATATGATGGGTTTCACATTT
Shewanella sp MR-4	Shewmr4_3492	-312	4.2	TATTGTAATTTAATCAACATTT
Shewanella sp MR-7	Shewmr7_0460	-312	4.2	TATTGTAATTTAATCAACATTT
Shewanella denitrificans OS217	Sden_3353	-298	3.8	TCTTGTTATTTAAACAACATTT
		-197	4.2	TAATGTGATGCATAGCAGCCTT
Shewanella frigidimarina NCIMB 400	Sfri_3757	-303	4.1	TATTGTTATTTAGACAAAATAA
Shewanella pealeana ATCC 700345	Spea_3774	-196	3.8	TATAGCGATAAAGTTAAAAAAT
Shewanella halifaxensis HAW-EB4	Shal_3859	-196	3.8	TATAGCGATAAAGTTAAAAAAT
Shewanella piezotolerans WP3	swp_0481	-181	3.8	TATAGCGATAAAGTTAAAATTT
Shewanella woodyi ATCC 51908	Swoo_4423	-345	3.8	AAGTTTTATCTAGTTAACCCTT

Position: -239 Score: 4.5 Sequence: AATAGTGATACAAACCACACTT Locus tag: Shew185_0622
	Shew185_0622	-239	4.5	AATAGTGATACAAACCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4019
Ortholog function: DNA helicase
Shewanella oneidensis MR-1	SO4019	-233	4.2	GATATTGATACAAATCACATTT
Shewanella putrefaciens CN-32	Sputcn32_3259	-235	4.5	AATAGTGATACAAACCACACTT
Shewanella sp W3-18-1	Sputw3181_0682	-236	4.5	AATAGTGATACAAACCACACTT
Shewanella baltica OS155	Sbal_3742	-239	4.5	AATAGTGATACAAACCACACTT

Position: -159 Score: 4.2 Sequence: AAGTGTGGTTTGTATCACTATT Locus tag: Shew185_0623
	Shew185_0623	-159	4.2	AAGTGTGGTTTGTATCACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4018
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO4018	-158	4.4	AAATGTGATTTGTATCAATATC
Shewanella putrefaciens CN-32	Sputcn32_3258	-158	4.2	AAGTGTGGTTTGTATCACTATT
Shewanella sp W3-18-1	Sputw3181_0683	-159	4.2	AAGTGTGGTTTGTATCACTATT
Shewanella sp ANA-3	Shewana3_3585	-159	5.1	AAATGTGATTTGTATCAACTTT
Shewanella baltica OS155	Sbal_3741	-159	4.2	AAGTGTGGTTTGTATCACTATT

Position: -136 Score: 4 Sequence: TTGGGTGATCTGCACCACAATC Locus tag: Shew185_0680
	Shew185_0680	-136	4	TTGGGTGATCTGCACCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3967
Ortholog function: Molybdenum-binding periplasmic protein
Shewanella sp ANA-3	Shewana3_0666	-125	4.2	TTAAGTGATCTTGGCCACAATC
Shewanella sp MR-4	Shewmr4_0667	-125	4.2	TTAAGTGATCTTGGCCACAATC
Shewanella sp MR-7	Shewmr7_3355	-125	4.5	TTAAGTGATCTTGGCCACAATA
Shewanella baltica OS155	Sbal_3674	-136	4	TTGGGTGATCTGCACCACAATC
Shewanella amazonensis SB2B	Sama_3095	-197	4	TAATGGTATTAATATCAAATAT
		-40	3.7	AGTCGTTATACTGGCCACAAAA
Shewanella woodyi ATCC 51908	Swoo_4247	-91	3.8	AAGTGTTATAAACATCATTTTA

Position: -144 Score: 3.3 Sequence: AAACATGATCTGCACCACAGCC Position: -67 Score: 3.6 Sequence: AAATGCGTTAAACCACACAAAA Locus tag: Shew185_0789
	Shew185_0789	-144	3.3	AAACATGATCTGCACCACAGCC
		-67	3.6	AAATGCGTTAAACCACACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp35
Ortholog function: outer membrane porin
Shewanella oneidensis MR-1	SO3896	-67	4.1	AAATGTGTTAAACCACACAAAA
Shewanella sp ANA-3	Shewana3_0733	-67	4.1	AAATGTGTTAAACCACACAAAA
Shewanella sp MR-4	Shewmr4_3228	-67	3.7	AAATGTGTAAAACCACACAAAA
Shewanella sp MR-7	Shewmr7_0761	-67	3.7	AAATGTGTAAAACCACACAAAA
Shewanella baltica OS155	Sbal_3570	-67	3.6	AAATGCGTTAAACCACACAAAA
Shewanella frigidimarina NCIMB 400	Sfri_0503	-145	4.5	TTATTTGATCTAGGCCACACTA
Shewanella loihica PV-4	Shew_3260	-150	4.1	AAATTTGATCTGCGCCACACTC
Shewanella pealeana ATCC 700345	Spea_0589	-150	4.4	AAACATGATCTAGTCCACAATT
Shewanella halifaxensis HAW-EB4	Shal_0676	-150	4.4	AAACATGATCTAGTCCACAATT
Shewanella piezotolerans WP3	swp_4514	-150	4.1	AAACTTGATCTAGCCCACAATC
Shewanella sediminis HAW-EB3	Ssed_4009	-151	4.4	AAACATGATCTAGTCCACAATT
Shewanella woodyi ATCC 51908	Swoo_4152	-241	3.3	AATTATTAACTCTTTCTTAAAT
Shewanella woodyi ATCC 51908	Swoo_4151	-149	4.3	AAGTTTGATCTAGTCCACAATC

Position: -127 Score: 4.8 Sequence: AAACTTGATCAAGATCACACTT Locus tag: Shew185_0790
	Shew185_0790	-127	4.8	AAACTTGATCAAGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shewana3_0734
Ortholog function: outer membrane porin, putative
Shewanella sp ANA-3	Shewana3_0734	-130	4.8	TCAAGTGATCAAGATCACATTT
Shewanella sp MR-4	Shewmr4_3227	-130	4	TCCAATGATCCAGATCACATTT
Shewanella sp MR-7	Shewmr7_0762	-130	4	TCCAATGATCCAGATCACATTT
Shewanella baltica OS155	Sbal_3569	-127	4.9	AAACTTGATCCAGATCACACTT
Shewanella amazonensis SB2B	Sama_0545	-112	5.1	TGATGTGATAGTGATCACACTT
Shewanella loihica PV-4	Shew_3252	-193	3.8	CAACATGATAAAACTCACGTAA
		-163	4.2	ATTTGCGACACGGATCACACCT
Shewanella piezotolerans WP3	swp_4513	-177	3.9	ACCTATGATTAATATCACACAT
Shewanella sediminis HAW-EB3	Ssed_4008	-223	4.3	AAAGATGATTGATATCACACAA
		-193	4.8	ATGCGTGATAAGAATCACAAAA

Position: -321 Score: 5 Sequence: AAGTGTGATCTTGATCAAGTTT Locus tag: Shew185_0791
	Shew185_0791	-321	5	AAGTGTGATCTTGATCAAGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3895
Ortholog function: HesA/MoeB/ThiF family protein related to EC-YgdL
Shewanella putrefaciens CN-32	Sputcn32_0780	-317	4.9	AAATGCGATATAGATCACAAAC
Shewanella sp W3-18-1	Sputw3181_3395	-317	4.9	AAATGCGATATAGATCACAAAC
Shewanella sp ANA-3	Shewana3_0735	-308	4.5	AAATGTGATCTTGATCACTTGA
Shewanella sp MR-4	Shewmr4_3226	-309	3.9	AAATGTGATCTGGATCATTGGA
Shewanella sp MR-7	Shewmr7_0763	-309	3.9	AAATGTGATCTGGATCATTGGA
Shewanella baltica OS155	Sbal_3568	-321	5	AAGTGTGATCTGGATCAAGTTT
Shewanella frigidimarina NCIMB 400	Sfri_0504	-251	4	TATCTTGATGAGTTTAACCAAT
Shewanella amazonensis SB2B	Sama_0546	-214	4.8	AAGTGTGATCACTATCACATCA
Shewanella loihica PV-4	Shew_3251	-226	4.6	AGGTGTGATCCGTGTCGCAAAT
		-196	3.8	TTACGTGAGTTTTATCATGTTG
Shewanella pealeana ATCC 700345	Spea_0591	-259	4.3	ATGTGTGACGCTTGTCACGGTT
Shewanella halifaxensis HAW-EB4	Shal_0678	-253	4.8	GTTTGTGATGTCTATCACGTTT
Shewanella piezotolerans WP3	swp_4512	-245	3.8	CGATGTGATCTTGATCTGGTTT
		-215	3.9	ATGTGTGATATTAATCATAGGT
Shewanella sediminis HAW-EB3	Ssed_4007	-324	5	TTTTGTGATTCTTATCACGCAT
		-294	4.6	TTGTGTGATATCAATCATCTTT
		-200	3.8	TTTTGTGAACTTGATTAACAAG
Shewanella woodyi ATCC 51908	Swoo_4150	-290	5.1	CTTTGTGATATCAATCACAATA

Position: -257 Score: 3.7 Sequence: AATACTGATCTCGATCAATAAA Position: -196 Score: 4 Sequence: CTCTGTGATCTTGGTCATATTC Locus tag: Shew185_0795
	Shew185_0795	-257	3.7	AATACTGATCTCGATCAATAAA
		-196	4	CTCTGTGATCTTGGTCATATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3890
Ortholog function: methyl-accepting chemotaxis protein
Shewanella oneidensis MR-1	SO3890	-196	4.6	CCATGTGATCTGGTTCAAATTT
Shewanella putrefaciens CN-32	Sputcn32_0776	-185	4.4	TTGTGTGACACGAATCAAGTTT
Shewanella sp W3-18-1	Sputw3181_3399	-185	4.4	TTGTGTGACACGAATCAAGTTT
Shewanella sp ANA-3	Shewana3_0739	-181	4.9	CTGTGTGATGTGGTTCAAATTT
Shewanella sp MR-4	Shewmr4_3223	-198	4.3	CCCTGTGATCTAGCTCAAATTT
Shewanella sp MR-7	Shewmr7_0766	-198	4.3	CCCTGTGATCTAGCTCAAATTT
Shewanella baltica OS155	Sbal_3564	-196	3.7	CTCTGTGATCTTGGTCGTATTC
Shewanella amazonensis SB2B	Sama_0550	-128	4.7	TAATTTGATGTGAATCAACTTT

Position: -149 Score: 4 Sequence: AACTTTGATCCGGATCGACTAT Locus tag: Shew185_0825
	Shew185_0825	-149	4	AACTTTGATCCGGATCGACTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD
Ortholog function: periplasmic nitrate reductase component NapD
Shewanella oneidensis MR-1	SO0849	-260	3.9	TAATGTGATTGGTATAAACCTC
		-150	3.9	AACTTTGATCCCGATCGACTAT
Shewanella putrefaciens CN-32	Sputcn32_3147	-147	3.9	AACTTTGATCCCGATCGACTAT
Shewanella sp W3-18-1	Sputw3181_0796	-147	3.9	AACTTTGATCCCGATCGACTAT
Shewanella sp ANA-3	Shewana3_3429	-149	3.9	AACTTTGATCCCGATCGACTAT
Shewanella sp MR-4	Shewmr4_0705	-149	3.9	AACTTTGATCCCGATCGACTAT
Shewanella sp MR-7	Shewmr7_3317	-149	3.9	AACTTTGATCCCGATCGACTAT
Shewanella baltica OS155	Sbal_3510	-150	4	AACTTTGATCCGGATCGACTAT
Shewanella loihica PV-4	Shew_3205	-154	3.8	AACTTTGATCTCGATCTACAAA
Shewanella pealeana ATCC 700345	Spea_0624	-173	4.3	ATTTGTGAACTAGATCAACACT
Shewanella halifaxensis HAW-EB4	Shal_0716	-174	4.2	ATCTGTGAATCAGATCACCATG
Shewanella sediminis HAW-EB3	Ssed_3956	-187	4.1	ATCTGAGACATAGGTCACACAT
Shewanella woodyi ATCC 51908	Swoo_4109	-179	4.4	AAATGTGAACTCCATCACGCAC
		-155	3.9	AATATTGATCTTGATCGACTAA

Position: -142 Score: 4.1 Sequence: TTATGCGATATTGTTCTTAATT Locus tag: Shew185_0838
	Shew185_0838	-142	4.1	TTATGCGATATTGTTCTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Shewanella oneidensis MR-1	SO0862	-145	4.7	TTATGCGATATTGTTCTCATTT
Shewanella putrefaciens CN-32	Sputcn32_3139	-142	4.2	TTATGCGATATTGTTCTAAATT
Shewanella sp W3-18-1	Sputw3181_0804	-142	4.2	TTATGCGATATTGTTCTAAATT
Shewanella sp ANA-3	Shewana3_3416	-143	3.9	TTATGCGATATTGTTCTAATTC
Shewanella sp MR-4	Shewmr4_0718	-143	3.9	TTATGCGATATTGTTCTAATTC
Shewanella sp MR-7	Shewmr7_3304	-143	3.9	TTATGCGATATTGTTCTAATTC
Shewanella baltica OS155	Sbal_3502	-142	4.1	TTATGCGATATTGTTCTTAATT
Shewanella amazonensis SB2B	Sama_2949	-144	4.2	TTATGTGATATTGTTCTGGTTT

Position: -170 Score: 4.3 Sequence: TTTTGTGAGTCTGCTAGCAAAA Locus tag: Shew185_0873
	Shew185_0873	-170	4.3	TTTTGTGAGTCTGCTAGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydD
Ortholog function: Transport ATP-binding protein CydD
Shewanella oneidensis MR-1	SO3780	-191	4.4	TTTATTGATCAGCATCGCATTT
Shewanella putrefaciens CN-32	Sputcn32_3106	-169	4.7	TTTTGTGAATCGGTTAACAAAA
Shewanella sp W3-18-1	Sputw3181_0838	-169	4.7	TTTTGTGAATCGGTTAACAAAA
Shewanella sp ANA-3	Shewana3_0812	-187	4.4	TTTATTGATCTTTATCTCATTT
		-167	4.5	TTTTGTGAATAGGCTAACAAAA
Shewanella sp MR-4	Shewmr4_3127	-187	4.4	TTTATTGATCTTTATCTCATTT
		-167	4.5	TTTTGTGAATAGGCTAACAAAA
Shewanella sp MR-7	Shewmr7_0840	-187	4.4	TTTATTGATCTTTATCTCATTT
		-167	4.5	TTTTGTGAATAGGCTAACAAAA
Shewanella baltica OS155	Sbal_3463	-170	4.3	TTTTGTGAGTCTGCTAGCAAAA
Shewanella frigidimarina NCIMB 400	Sfri_3213	-214	4.2	TATTGTGTTGCAATTAACAATG
		-104	5	AAATGTGAATCAGATAACATTT
Shewanella amazonensis SB2B	Sama_2679	-137	4.2	TTTTTTGATCCAGCGCAAATTC
		-118	4.2	TTCTGTGAATCCCCTAACAAAT
Shewanella loihica PV-4	Shew_0613	-129	4.5	TTTTTTGATCTAGCTCAATTTT
		-110	4.8	TTTTGTGAGCCTAATAACAATT
Shewanella pealeana ATCC 700345	Spea_3494	-185	4.1	TTTATTGATCTAGCTCAATTTT
		-166	4.4	TTTTGTGAGTCCGATAGCAAAT
Shewanella halifaxensis HAW-EB4	Shal_3589	-233	4.1	TTTATTGATCTAGCTCAATTTT
		-214	4.9	TTTTGTGAGTCCGATAACATTT
Shewanella sediminis HAW-EB3	Ssed_3849	-139	4.1	AAAATTGATCTAGCTCAATTTT
		-120	4.7	TTTTGTGAATCCGTTAACAATT
Shewanella woodyi ATCC 51908	Swoo_0710	-149	4.1	TTTATTGATCTAGCTCAATTTT
		-130	4.7	TTTTGTGAATCTCTTAACATTT

Position: -144 Score: 4.3 Sequence: CAATGTGAGCGACTTCAAATTG Locus tag: Shew185_0877
	Shew185_0877	-144	4.3	CAATGTGAGCGACTTCAAATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3776
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO3776	-137	4.2	CAATGTGAGCGGCTTCAAAATG
Shewanella putrefaciens CN-32	Sputcn32_3102	-147	4.2	CAATGTGAGCGGCTTCAAATTG
Shewanella sp W3-18-1	Sputw3181_0842	-147	4.2	CAATGTGAGCGGCTTCAAATTG
Shewanella sp ANA-3	Shewana3_0817	-141	4.2	CAATGTGAGCGGCTTCAAATTG
Shewanella sp MR-4	Shewmr4_3123	-141	4.2	CAATGTGAGCGGCTTCAAATTG
Shewanella sp MR-7	Shewmr7_0844	-30	3.8	TAACGTGTTCTACAACAAACTA
Shewanella baltica OS155	Sbal_3459	-146	3.8	GAGTGCGAGCTAGCTCAAATTT

Position: -128 Score: 4.4 Sequence: TATAGTGTTGTCCGTCACATTT Locus tag: Shew185_0880
	Shew185_0880	-128	4.4	TATAGTGTTGTCCGTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3774
Ortholog function: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Shewanella oneidensis MR-1	SO3774	-146	4.4	TATAGTGTTGTCCGTCACATTT
Shewanella putrefaciens CN-32	Sputcn32_3099	-128	3.8	GATAGTGTTGTCCGTCACATTT
Shewanella sp W3-18-1	Sputw3181_0845	-128	3.8	GATAGTGTTGTCCGTCACATTT
Shewanella sp ANA-3	Shewana3_0819	-131	4.4	TATAGTGTTGTCCGTCACATTT
Shewanella sp MR-4	Shewmr4_3122	-132	4.4	TATAGTGTTGTCCGTCACATTT
Shewanella sp MR-7	Shewmr7_0850	-131	4.4	TATAGTGTTGTCCGTCACATTT
Shewanella baltica OS155	Sbal_3458	-128	4.4	TATAGTGTTGTCCGTCACATTT
Shewanella frigidimarina NCIMB 400	Sfri_0568	-172	3.8	TTCAGTGAACAAAATCAAACAA
		-131	4.1	TTGAGTGTCCAAGTTCACATTT
Shewanella loihica PV-4	Shew_0615	-146	3.9	AAGAGTGTCCCTCGTCACATTT
Shewanella pealeana ATCC 700345	Spea_3490	-127	3.9	ATTATTGCCACTCATCACATTT
Shewanella piezotolerans WP3	swp_0809	-137	3.9	AAAGGTGTCGCTCGTCACATTT
Shewanella sediminis HAW-EB3	Ssed_3846	-162	4	AATGGTGTCCCTCGTCACATTT
Shewanella woodyi ATCC 51908	Swoo_0714	-176	3.9	AAGAGTGTCCCTCGTCACATTT

Position: -142 Score: 4.4 Sequence: TTTTGTGAGCTTGCTAAAACTA Locus tag: Shew185_0939
	Shew185_0939	-142	4.4	TTTTGTGAGCTTGCTAAAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemG
Ortholog function: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Shewanella putrefaciens CN-32	Sputcn32_3038	-207	4.5	TTTTGTGAGCAAGCTAAAATTA
		-135	3.9	AATTGATATTTAAATCACCTAG
Shewanella sp W3-18-1	Sputw3181_0907	-207	4.5	TTTTGTGAGCAAGCTAAAATTA
		-135	3.9	AATTGATATTTAAATCACCTAG
Shewanella sp ANA-3	Shewana3_0871	-317	4.1	TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-4	Shewmr4_3066	-320	4.1	TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-7	Shewmr7_0906	-318	4.1	TTTTGTGAGCAAGCTAGAATTA
Shewanella baltica OS155	Sbal_3400	-316	4.4	TTTTGTGAGACAGTTAAAACTA
Shewanella frigidimarina NCIMB 400	Sfri_0813	-144	4	TTTTGCGCGGCAGTTCACATTG
		-83	4.4	TGACGTGATCTGTTTCATGTAA
Shewanella amazonensis SB2B	Sama_2882	-130	3.9	AAATGTGAGGCAGTTGGAATTT
Shewanella loihica PV-4	Shew_0678	-126	4.1	ATTTGTGACATCGGTAAACTTA
Shewanella pealeana ATCC 700345	Spea_0673	-140	4	TTTTGTGAGGTAGGTAAAGCTA
		-98	3.8	CCTCGTGATCTGTTTCATGTAA
Shewanella halifaxensis HAW-EB4	Shal_3525	-139	4	TTTTGTGAGGTAGGTAAAGCTA
		-97	3.8	CCTCGTGATCTGTTTCATGTAA
Shewanella piezotolerans WP3	swp_4046	-124	3.9	TTTTGTGAGGTAGGTAAAGGTA
		-77	3.7	TGATCTGATTCAATTAAAAATA
Shewanella sediminis HAW-EB3	Ssed_3790	-120	4.9	ATTTGTGATGCAGGTAAAATTT
		-78	4	TGCCGTGATCTGTTTCATGTAA
Shewanella woodyi ATCC 51908	Swoo_0793	-123	4.3	AATTGTGATATAGGTAAGAGTA

Position: -131 Score: 4.1 Sequence: TACAGCGATCTGGCTCAAATAT Locus tag: Shew185_0959
	Shew185_0959	-131	4.1	TACAGCGATCTGGCTCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chaA
Ortholog function: calcium/proton antiporter
Shewanella oneidensis MR-1	SO1001	-118	4.6	AAAAGTGATCAAGCTCAAACAT
Shewanella sp ANA-3	Shewana3_3290	-118	4.3	AAAAGCGATCTCGCTCAAAAAT
Shewanella baltica OS155	Sbal_3384	-104	4.2	TACAGCGATCTAGCTCAAATAT

Position: -177 Score: 4.3 Sequence: AGCCGTGATCTTGCTCAAAAAT Locus tag: Shew185_1007
	Shew185_1007	-177	4.3	AGCCGTGATCTTGCTCAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3683
Ortholog function: aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
Shewanella putrefaciens CN-32	Sputcn32_2982	-168	4.3	AGCCGTGATCTTGCTCAAAAAT
Shewanella sp W3-18-1	Sputw3181_0965	-168	4.3	AGCCGTGATCTTGCTCAAAAAT
Shewanella baltica OS155	Sbal_3332	-189	4.2	AGCCGTGATATTGCTCAAAAAT
Shewanella frigidimarina NCIMB 400	Sfri_0937	-146	3.9	CTTAGTGATCAAAATCAAATCA
Shewanella amazonensis SB2B	Sama_2855	-106	4.4	ACTCGTGATCCAGATCAAGTTT
Shewanella loihica PV-4	Shew_3103	-201	4.2	CCACTTGATCCAGATCACATTT
Shewanella pealeana ATCC 700345	Spea_3357	-113	4.6	GAGTTTGATCTAGCTCACAATT
Shewanella halifaxensis HAW-EB4	Shal_3429	-113	4.4	GAATTTGATCTCAGTCACAATT
Shewanella piezotolerans WP3	swp_1052	-113	4	GAAGTTGATCTTGCTCACAAAA

Position: -76 Score: 3.8 Sequence: ATTTTTGAGCAAGATCACGGCT Locus tag: Shew185_1008
	Shew185_1008	-76	3.8	ATTTTTGAGCAAGATCACGGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3682
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO3682	-109	3.8	TTGCGTGATTTTGTGCAAGCAT
Shewanella putrefaciens CN-32	Sputcn32_2981	-76	3.8	ATTTTTGAGCAAGATCACGGCT
Shewanella sp W3-18-1	Sputw3181_0966	-76	3.8	ATTTTTGAGCAAGATCACGGCT
Shewanella sp MR-4	Shewmr4_0873	-166	3.7	TGACGTGATTTGTGGCGTATAA
Shewanella sp MR-7	Shewmr7_3149	-166	3.7	TGACGTGATTTGTGGCGTATAA
Shewanella baltica OS155	Sbal_3331	-76	3.7	ATTTTTGAGCAATATCACGGCT
Shewanella amazonensis SB2B	Sama_2854	-78	4	AAACTTGATCTGGATCACGAGT
Shewanella loihica PV-4	Shew_3102	-84	4.2	AAATGTGATCTGGATCAAGTGG
Shewanella pealeana ATCC 700345	Spea_3356	-102	4.7	AATTGTGAGCTAGATCAAACTC
Shewanella halifaxensis HAW-EB4	Shal_3428	-90	4.8	AATTGTGACTGAGATCAAATTC
Shewanella piezotolerans WP3	swp_1054	-79	4.3	TTTTGTGAGCAAGATCAACTTC
Shewanella sediminis HAW-EB3	Ssed_3715	-111	4.2	CAGTGTGATCTCGATCAACTTC

Position: -139 Score: 3.8 Sequence: TGATATGAAATTGTTCGCAGTT Position: -95 Score: 4.1 Sequence: TTTCGTTATATACTTAACAGAA Locus tag: Shew185_1101
	Shew185_1101	-139	3.8	TGATATGAAATTGTTCGCAGTT
		-95	4.1	TTTCGTTATATACTTAACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3556
Ortholog function: cyclic nucleotide phosphodiesterase, putative
Shewanella putrefaciens CN-32	Sputcn32_1039	-81	4	ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32	Sputcn32_1039	-81	4	ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1	Sputw3181_3126	-81	4	ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1	Sputw3181_3126	-81	4	ATTTGCAATCATGATCACACAG
Shewanella baltica OS155	Sbal_1034	-139	3.8	TGATATGAAATTGTTCGCAGTT
		-95	4.1	TTTCGTTATATACTTAACAGAA
Shewanella denitrificans OS217	Sden_1222	-315	3.7	AATTCTGACTCATCTTAAATTA

Position: -127 Score: 3.8 Sequence: CAGTGTGATCTTGCCAGCAAAA Locus tag: Shew185_1105
	Shew185_1105	-127	3.8	CAGTGTGATCTTGCCAGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3552
Ortholog function: Von Willebrand factor type A domain protein
Shewanella oneidensis MR-1	SO3552	-152	4.1	TTGTGTGATCATAGTTGCAAAA
Shewanella putrefaciens CN-32	Sputcn32_1043	-143	4	CTGTGTGATCATGATTGCAAAT
Shewanella sp W3-18-1	Sputw3181_3122	-143	4	CTGTGTGATCATGATTGCAAAT
Shewanella sp ANA-3	Shewana3_3153	-165	4.1	TTGTGTGATCATAGTTGCAAAA
Shewanella sp MR-4	Shewmr4_2973	-165	4.4	TTGTGTGATCATAGTTACAAAA
Shewanella sp MR-7	Shewmr7_3055	-165	4.4	TTGTGTGATCATAGTTACAAAA
Shewanella baltica OS155	Sbal_1038	-126	3.8	CAGTGTGATCTTGTCAGCAAAA

Position: -235 Score: 4.4 Sequence: TCATGTGATCAAGCTCGCGTTT Position: -96 Score: 4.1 Sequence: AATTTGGATGTAGGGCACATTT Locus tag: Shew185_1113
	Shew185_1113	-235	4.4	TCATGTGATCAAGCTCGCGTTT
		-96	4.1	AATTTGGATGTAGGGCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: phk
Ortholog function: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Shewanella oneidensis MR-1	SO3542	-95	4.2	AATTTGGATGCAGAACACATTT
Shewanella putrefaciens CN-32	Sputcn32_1051	-234	4	TCATGTGATCAAGCCTACATTT
		-95	4.1	AATTTGGATGTAGGGCACATTT
Shewanella sp W3-18-1	Sputw3181_3114	-234	4	TCATGTGATCAAGCCTACATTT
		-95	4.1	AATTTGGATGTAGGGCACATTT
Shewanella sp ANA-3	Shewana3_3145	-95	4	AATTTGGATGCAGGGCACATTT
Shewanella sp MR-4	Shewmr4_2965	-95	4.3	AATTTGGATGTAGAACACATTT
Shewanella sp MR-7	Shewmr7_3047	-95	4.3	AATTTGGATGTAGAACACATTT
Shewanella baltica OS155	Sbal_1046	-235	4.4	TCATGTGATCAAGCTCGCGTTT
		-96	4.1	AATTTGGATGTAGGGCACATTT
Shewanella denitrificans OS217	Sden_2731	-233	5	CTTAGTGATCCAGTTCACATTA
		-94	3.7	AAGTTAGATCGGGGACACATTT
Shewanella frigidimarina NCIMB 400	Sfri_2898	-233	4.5	ACAAGTGATATCCATCACACTT
		-95	3.8	AAATTAGATAAAGGCCACATTA
Shewanella amazonensis SB2B	Sama_0915	-240	4.1	ACTCGTGATCAAGCTCACGGTT
		-99	4.1	AATTTGGATGTGGGGCACATTT
Shewanella loihica PV-4	Shew_1091	-238	4.6	CCATGTGATACAGATCACAGTT
		-97	4	AAATAAGATATTGAACACATTT
Shewanella pealeana ATCC 700345	Spea_1076	-235	3.9	CTGAGCGATATAGATCACAGTT
Shewanella halifaxensis HAW-EB4	Shal_1124	-56	4.3	TATAGTGAGTTATATAAAATTT
Shewanella piezotolerans WP3	swp_3738	-237	4.5	CTGAGTGATACAGATCACACAT
		-96	3.8	AAATAAGATACAGGACACATTT
Shewanella sediminis HAW-EB3	Ssed_1186	-238	4.4	CCATGTGACGCAGATCACAGTT
		-97	4.2	AAATAAGATGTAGAACACATTT
Shewanella woodyi ATCC 51908	Swoo_1282	-238	4.4	TCGCGTGATCACGATCACACTT
		-97	3.8	AAACAAGATATAGAACACATTT

Position: -220 Score: 3.9 Sequence: AAACGCGAGCTTGATCACATGA Locus tag: Shew185_1114
	Shew185_1114	-220	3.9	AAACGCGAGCTTGATCACATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3541
Ortholog function: sodium:alanine symporter family protein
Shewanella baltica OS155	Sbal_1047	-220	3.9	AAACGCGAGCTTGATCACATGA
Shewanella denitrificans OS217	Sden_2730	-140	4.6	TAATGTGAACTGGATCACTAAG
Shewanella frigidimarina NCIMB 400	Sfri_2897	-306	4.2	AAGTGTGATGGATATCACTTGT
Shewanella loihica PV-4	Shew_1092	-210	4.4	AACTGTGATCTGTATCACATGG
Shewanella pealeana ATCC 700345	Spea_1077	-207	4.1	AACTGTGATCTATATCGCTCAG
Shewanella piezotolerans WP3	swp_3737	-210	4.5	ATGTGTGATCTGTATCACTCAG
Shewanella sediminis HAW-EB3	Ssed_1187	-214	4.2	AACTGTGATCTGCGTCACATGG
Shewanella woodyi ATCC 51908	Swoo_1283	-215	4.2	AAGTGTGATCGTGATCACGCGA

Position: -225 Score: 4.5 Sequence: TTAGGTGATACATCTCAAAAAA Locus tag: Shew185_1118
	Shew185_1118	-225	4.5	TTAGGTGATACATCTCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpsT
Ortholog function: SSU ribosomal protein S20p
Shewanella oneidensis MR-1	SO3537	-225	4.5	TTAGGTGATTCATCTCAAAAAA
Shewanella putrefaciens CN-32	Sputcn32_1056	-225	4.5	TTAGGTGATTCATCTCAAAAAA
Shewanella sp W3-18-1	Sputw3181_3109	-225	4.5	TTAGGTGATTCATCTCAAAAAA
Shewanella sp MR-4	Shewmr4_2960	-225	4.5	TTAGGTGATTCATCTCAAAAAA
Shewanella sp MR-7	Shewmr7_3042	-225	4.5	TTAGGTGATTCATCTCAAAAAA
Shewanella baltica OS155	Sbal_1051	-225	4.5	TTAGGTGATACATCTCAAAAAA

Position: -49 Score: 4.6 Sequence: TTTTTTGAGATGTATCACCTAA Locus tag: Shew185_1119
	Shew185_1119	-49	4.6	TTTTTTGAGATGTATCACCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mviN
Ortholog function: proposed peptidoglycan lipid II flippase MurJ
Shewanella oneidensis MR-1	SO3534	-49	4.5	TTTTTTGAGATGAATCACCTAA
Shewanella putrefaciens CN-32	Sputcn32_1057	-49	4.5	TTTTTTGAGATGAATCACCTAA
Shewanella sp W3-18-1	Sputw3181_3108	-49	4.5	TTTTTTGAGATGAATCACCTAA
Shewanella sp ANA-3	Shewana3_3138	-49	4.5	TTTTTTGAGATGAATCACCTAA
Shewanella sp MR-4	Shewmr4_2959	-49	4.5	TTTTTTGAGATGAATCACCTAA
Shewanella sp MR-7	Shewmr7_3041	-49	4.5	TTTTTTGAGATGAATCACCTAA
Shewanella baltica OS155	Sbal_1052	-49	4.6	TTTTTTGAGATGTATCACCTAA
Shewanella amazonensis SB2B	Sama_0922	-138	3.9	TATTGTTACTGGCAGCAAACAA

Position: -219 Score: 4.2 Sequence: TTTTGTGAAGCACTGCAAAGAT Locus tag: Shew185_1157
	Shew185_1157	-219	4.2	TTTTGTGAAGCACTGCAAAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: shew_3181
Ortholog function: twin-arginine translocation pathway signal precursor
Shewanella putrefaciens CN-32	Sputcn32_3387	-216	4.2	TTTTGTGAAGCACTGCAAAGAT
Shewanella sp W3-18-1	Sputw3181_0556	-216	4.2	TTTTGTGAAGCACTGCAAAGAT
Shewanella frigidimarina NCIMB 400	Sfri_3694	-198	4	ATATGTCATACATTTAACGTAT
Shewanella loihica PV-4	Shew_3181	-207	4.3	TTTTGTGAAGCACAGCAAAGAT

Position: -293 Score: 3.9 Sequence: AATAGTGATTTTTATTGCAAAC Position: -225 Score: 4 Sequence: TGGTGTGAGCGATATCTCAATG Position: -193 Score: 4.3 Sequence: TAATTTGAGGATGCGCACATTT Locus tag: Shew185_1223
	Shew185_1223	-293	3.9	AATAGTGATTTTTATTGCAAAC
		-225	4	TGGTGTGAGCGATATCTCAATG
		-193	4.3	TAATTTGAGGATGCGCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1326
Ortholog function: COG1242: Predicted Fe-S oxidoreductase
Shewanella oneidensis MR-1	SO1326	-294	4.3	AATAGTGATTTTTATTGCAAAT
Shewanella putrefaciens CN-32	Sputcn32_1137	-293	4.3	AATAGTGATTTTTATTGCAAAT
		-224	4.6	ATTTGTGAGGTAGATCGCTAAA
Shewanella sp W3-18-1	Sputw3181_3027	-293	4.3	AATAGTGATTTTTATTGCAAAT
		-224	4.3	GTTTGTGATGTAGATCGCTAAA
Shewanella sp ANA-3	Shewana3_3048	-294	4.3	AATAGTGATTTTTATTGCAAAT
Shewanella sp MR-4	Shewmr4_2870	-55	4.3	AATAGTGATTTTTATTGCAAAT
Shewanella sp MR-7	Shewmr7_2952	-55	4.3	AATAGTGATTTTTATTGCAAAT
Shewanella baltica OS155	Sbal_1179	-293	3.9	AATAGTGATTTTTATTGCAAAC
		-225	4.2	TGATGTGAGCAATATCTCAATG
		-193	4.3	TAATTTGAGGATGCGCACATTT
Shewanella frigidimarina NCIMB 400	Sfri_2950	-128	3.9	TTTTTTGAGTTTGTGCACAACT
Shewanella loihica PV-4	Shew_1033	-148	4.4	AAAAGTGATTTTTATTGCATAT
		-127	4	TACAGTGAATTATTTAACAAAT
Shewanella pealeana ATCC 700345	Spea_1014	-303	3.9	TAAATTGACCTGTATAACCTTA
		-201	4	TAAAGTGATTTTTTTTGCAGAT
Shewanella halifaxensis HAW-EB4	Shal_1062	-210	4	TAAAGTGATTTTTCTTGCAGAT
Shewanella piezotolerans WP3	swp_3802	-111	3.8	TTATTTGAGCTAGCGCTAATAA
Shewanella woodyi ATCC 51908	Swoo_1222	-229	3.8	AAATATGAGTTCTATTGCAAAT

Position: -101 Score: 4.7 Sequence: TAGATTGATCCAGATCACAAAT Locus tag: Shew185_1226
	Shew185_1226	-101	4.7	TAGATTGATCCAGATCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaC
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella oneidensis MR-1	SO1329	-162	4.7	TGTATTGATCCAGATCACAAAT
Shewanella putrefaciens CN-32	Sputcn32_1140	-101	4.7	TGTATTGATCCAGATCACAAAT
Shewanella sp W3-18-1	Sputw3181_3024	-101	4.7	TGTATTGATCCAGATCACAAAT
Shewanella sp ANA-3	Shewana3_3045	-162	4.4	TGGATTGATCCAGATCACAAAT
Shewanella sp MR-4	Shewmr4_2867	-162	4.4	TGGATTGATCCAGATCACAAAT
Shewanella sp MR-7	Shewmr7_2949	-162	4.4	TGGATTGATCCAGATCACAAAT
Shewanella baltica OS155	Sbal_1182	-101	4.7	TAGATTGATCCAGATCACAAAT
Shewanella denitrificans OS217	Sden_2784	-157	4.8	TGAATTGATCTAGATCACATTT
Shewanella frigidimarina NCIMB 400	Sfri_2947	-158	4.4	TCTATTGATCTAAATCACAAAT
Shewanella amazonensis SB2B	Sama_0861	-102	4.2	TGAATTGATTCAGATCACGTTA
Shewanella loihica PV-4	Shew_1036	-162	4.6	TCATTTGACTTAGATCACAAAT
Shewanella pealeana ATCC 700345	Spea_1019	-100	4.6	TCATTTGACTTAGATCACAAAT
Shewanella halifaxensis HAW-EB4	Shal_1065	-99	5.1	TTATTTGACTTAGATCACAAAT
Shewanella piezotolerans WP3	swp_3798	-98	4.6	TCATTTGACTTAGATCACAAAT
Shewanella sediminis HAW-EB3	Ssed_1130	-103	4.3	TCATTTGACAAAGATCACAAAT
Shewanella woodyi ATCC 51908	Swoo_1225	-96	4.3	TCATTTGACTAAGATCACAAAT

Position: -124 Score: 3.9 Sequence: TAAGGTGATCGTTCTCTAACAT Locus tag: Shew185_1260
	Shew185_1260	-124	3.9	TAAGGTGATCGTTCTCTAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella oneidensis MR-1	SO1363	-124	4.2	TAAAGTGATCTTTCTCTAAGAT
Shewanella putrefaciens CN-32	Sputcn32_1174	-124	4.3	TAAGGTGATAACCCTCGCAAAT
Shewanella sp W3-18-1	Sputw3181_2990	-124	4.3	TAAGGTGATAACCCTCGCAAAT
Shewanella sp MR-4	Shewmr4_2832	-124	4	TAAGGTGATCTCCCTCTAAGAT
Shewanella sp MR-7	Shewmr7_2914	-124	3.6	CAAGGTGATCTCTCTCTAAGAT
Shewanella baltica OS155	Sbal_1216	-124	4.1	TAAGGTGATCGTTCTCTAATAT
Shewanella frigidimarina NCIMB 400	Sfri_3609	-125	4	GAAGGTGATGTGGCTCATAAAA
Shewanella amazonensis SB2B	Sama_0895	-113	3.6	TAAGATGATCTGCTTCAAGGAA
Shewanella loihica PV-4	Shew_1069	-125	4.5	TAATTTGATCCGCTTCATAGTT
Shewanella pealeana ATCC 700345	Spea_1055	-125	4.5	AAAAGTGATCTCTTTCATAGTT
Shewanella halifaxensis HAW-EB4	Shal_1103	-96	4.3	TAAGGTGATCTCTTTCATGTTT
Shewanella piezotolerans WP3	swp_3762	-42	4.4	TAAGGTGATCTCTTTCATAGTT
Shewanella sediminis HAW-EB3	Ssed_1165	-170	3.4	TAATGCAATTGGTATTATAATT
Shewanella woodyi ATCC 51908	Swoo_1260	-125	4.2	GAATTTGATCTGTCTCAAACTT

Position: -77 Score: 5.2 Sequence: AAATGTGATCTAGATCTCGTTT Locus tag: Shew185_1265
	Shew185_1265	-77	5.2	AAATGTGATCTAGATCTCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiA-2
Ortholog function: Ribosome hibernation protein YfiA
Shewanella oneidensis MR-1	SO3422	-78	4.7	AAGTGTGATTTAACTCTCGTTT
Shewanella putrefaciens CN-32	Sputcn32_2740	-77	5.1	TTTTGTGATTTAGATCTCGTTT
Shewanella sp W3-18-1	Sputw3181_1272	-77	5.1	TTTTGTGATTTAGATCTCGTTT
Shewanella sp ANA-3	Shewana3_1133	-78	5.1	AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-4	Shewmr4_1132	-78	5.1	AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-7	Shewmr7_1203	-78	5.1	AAATGTGATTTAGATCTCGTTT
Shewanella baltica OS155	Sbal_1221	-77	5.2	AAATGTGATCTAGATCTCGTTT
Shewanella denitrificans OS217	Sden_2746	-77	4.8	AAGTGTGACTTTGATCACGCTT
		-38	4.1	TAATCTGAAGTTAAGCACATAA
Shewanella frigidimarina NCIMB 400	Sfri_2912	-77	5	AAGTGTGATGCAGATCACTATT
Shewanella amazonensis SB2B	Sama_0899	-78	4.3	AAACGTGATTTTACTCACGACT
Shewanella loihica PV-4	Shew_1073	-76	4.6	AAAGTTGATCTAGATCACGTTT
Shewanella pealeana ATCC 700345	Spea_1060	-76	4.6	AAACGTGATTTAGATCACGACT
Shewanella halifaxensis HAW-EB4	Shal_4284	-83	4.6	AAACATGACCTAGATCACACTA
		-58	3.8	TAATGTGATTGGACTATTGTAA
Shewanella halifaxensis HAW-EB4	Shal_1108	-76	4.6	AAACGTGATTTAGATCACGACT
Shewanella piezotolerans WP3	swp_3757	-76	4.6	AAACGTGATTTAGATCACGACT
Shewanella sediminis HAW-EB3	Ssed_1169	-222	3.8	TTTTGAGAGGCAAATAAAAAAA
		-76	4.6	AAACGTGATTTAGATCACGACT
Shewanella woodyi ATCC 51908	Swoo_1264	-76	4.5	AAACGTGATCAAGATCACGACT

Position: -244 Score: 5 Sequence: AAACGAGATCTAGATCACATTT Locus tag: Shew185_1266
	Shew185_1266	-244	5	AAACGAGATCTAGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3421
Ortholog function: b-type cytochrome, putative
Shewanella oneidensis MR-1	SO3421	-244	4.2	AAACGAGAGTTAAATCACACTT
Shewanella putrefaciens CN-32	Sputcn32_2739	-242	4.8	AAACGAGATCTAAATCACAAAA
Shewanella sp W3-18-1	Sputw3181_1273	-242	4.8	AAACGAGATCTAAATCACAAAA
Shewanella sp ANA-3	Shewana3_1134	-241	4.9	AAACGAGATCTAAATCACATTT
Shewanella sp MR-4	Shewmr4_1133	-241	4.9	AAACGAGATCTAAATCACATTT
Shewanella sp MR-7	Shewmr7_1204	-241	4.9	AAACGAGATCTAAATCACATTT
Shewanella baltica OS155	Sbal_1222	-244	5	AAACGAGATCTAGATCACATTT
Shewanella denitrificans OS217	Sden_2745	-291	4.7	AAGCGTGATCAAAGTCACACTT
Shewanella frigidimarina NCIMB 400	Sfri_2911	-383	5.2	AATAGTGATCTGCATCACACTT
Shewanella amazonensis SB2B	Sama_0900	-234	4.2	AGTCGTGAGTAAAATCACGTTT
Shewanella loihica PV-4	Shew_1074	-208	4.9	AAACGTGATCTAGATCAACTTT
Shewanella pealeana ATCC 700345	Spea_1061	-255	4.9	AGTCGTGATCTAAATCACGTTT
Shewanella halifaxensis HAW-EB4	Shal_1109	-255	4.9	AGTCGTGATCTAAATCACGTTT
Shewanella piezotolerans WP3	swp_3756	-366	4.9	AGTCGTGATCTAAATCACGTTT
Shewanella sediminis HAW-EB3	Ssed_1170	-236	4.9	AGTCGTGATCTAAATCACGTTT
Shewanella woodyi ATCC 51908	Swoo_1265	-234	4.9	AGTCGTGATCTTGATCACGTTT

Position: -78 Score: 5.5 Sequence: AAATGTGATTAAGTTCACAATT Locus tag: Shew185_1274
	Shew185_1274	-78	5.5	AAATGTGATTAAGTTCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_3747
Ortholog function: hypothetical protein
Shewanella sp ANA-3	Shewana3_1142	-85	4.4	GGATGTGAGTTGCTTCACAATT
Shewanella sp ANA-3	Shewana3_1142	-85	4.4	GGATGTGAGTTGCTTCACAATT
Shewanella sp MR-4	Shewmr4_1141	-85	5	AGATGTGACTTGCCTCACAATT
Shewanella sp MR-4	Shewmr4_1141	-85	5	AGATGTGACTTGCCTCACAATT
Shewanella sp MR-7	Shewmr7_1212	-85	4.4	GGATGTGACTTGCCTCACAATT
Shewanella sp MR-7	Shewmr7_1212	-85	4.4	GGATGTGACTTGCCTCACAATT
Shewanella baltica OS155	Sbal_1230	-78	5.5	AAATGTGATTAAGTTCACAATT
Shewanella baltica OS155	Sbal_1230	-78	5.5	AAATGTGATTAAGTTCACAATT
Shewanella pealeana ATCC 700345	Spea_1069	-77	4.4	CTGTGCGATCTGTGTCACAATT
Shewanella pealeana ATCC 700345	Spea_1069	-77	4.4	CTGTGCGATCTGTGTCACAATT
Shewanella halifaxensis HAW-EB4	Shal_1117	-77	3.8	CGGTGCGATCTGTATCACTATT
Shewanella halifaxensis HAW-EB4	Shal_1117	-77	3.8	CGGTGCGATCTGTATCACTATT

Position: -273 Score: 4 Sequence: AACTGTGACGAGGCACACGTTA Locus tag: Shew185_1281
	Shew185_1281	-273	4	AACTGTGACGAGGCACACGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3406
Ortholog function: FIG024006: iron uptake protein
Shewanella oneidensis MR-1	SO3406	-298	3.8	ATTTGTGCACAGCATCAACAAA
Shewanella sp MR-4	Shewmr4_1148	-278	4.8	ATTTGTGACAAATTGCACATTA
		-205	4.1	ATTCGTTAGGGATCTCACAGAT
Shewanella sp MR-7	Shewmr7_1219	-278	4.8	ATTTGTGACAAATTGCACATTA
		-205	4.1	ATTCGTTAGGGAACTCACAGAT
Shewanella woodyi ATCC 51908	Swoo_3307	-141	4.1	ATATGAGATGCAGCTCTCATCT

Position: -222 Score: 4.2 Sequence: TTTTGTGATTGATTTATTATTA Position: -144 Score: 4.4 Sequence: CTTCTTGATGGAGGTCACATTT Locus tag: Shew185_1283
	Shew185_1283	-222	4.2	TTTTGTGATTGATTTATTATTA
		-144	4.4	CTTCTTGATGGAGGTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiA-1
Ortholog function: ribosomal subunit interface protein
Shewanella oneidensis MR-1	SO3403	-142	4.7	TTCTTTGATAGGTCTCACATTT
Shewanella putrefaciens CN-32	Sputcn32_2725	-145	4.9	TTCTTTGATGTAACTCACATTT
Shewanella sp W3-18-1	Sputw3181_1287	-145	4.9	TTCTTTGATGTAACTCACATTT
Shewanella sp ANA-3	Shewana3_1151	-142	4.6	TTCTTTGATAAGTCTCACATTT
Shewanella sp MR-4	Shewmr4_1150	-142	4.6	TTCTTTGATAAATCTCACATTT
Shewanella sp MR-7	Shewmr7_1221	-142	5	TTTTTTGATAAATCTCACATTT
Shewanella baltica OS155	Sbal_1239	-222	4.2	TTTTGTGATTGATTTATTATTA
		-144	4.3	CTTCTTGATGGCGGTCACATTT
Shewanella halifaxensis HAW-EB4	Shal_1258	-319	3.9	AAGAGTGATAAAAATCAAGCTA
		-230	3.8	TATCCTGATGAATGCCACAATT
Shewanella piezotolerans WP3	swp_3408	-177	4.1	TGATGTGATAAAAAGCACTCAT

Position: -263 Score: 4.2 Sequence: CTAAGTGATCACTGTCACAGAT Locus tag: Shew185_1340
	Shew185_1340	-263	4.2	CTAAGTGATCACTGTCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lldP
Ortholog function: L-lactate permease
Shewanella putrefaciens CN-32	Sputcn32_1272	-261	4.7	CTAAGTGATCGAGATCACAGAT
		-179	4	CAAGATGATCTAGATCATATTA
Shewanella sp W3-18-1	Sputw3181_2834	-261	4.7	CTAAGTGATCGAGATCACAGAT
		-179	4	CAAGATGATCTAGATCATATTA
Shewanella sp ANA-3	Shewana3_2904	-263	4.1	TCGAGTGACATGGATCACAGTT
		-181	4.2	CAAAATGATCTAGATCATATTA
Shewanella baltica OS155	Sbal_1354	-263	4.2	CTAAGTGATCACTGTCACAGAT
		-181	4	CAAGATGATCTAGATCATATTA
Shewanella loihica PV-4	Shew_3135	-247	4.2	ACCAGTGATAGAGATCACACTT
		-166	4.2	CATAATGATCTAGATCATATTT

Position: -149 Score: 4.7 Sequence: AATCGTGATATTGCTCACTATT Locus tag: Shew185_1354
	Shew185_1354	-149	4.7	AATCGTGATATTGCTCACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Shewanella oneidensis MR-1	SO1538	-149	4.7	ATTCGTGATATTGCTCACTATT
Shewanella putrefaciens CN-32	Sputcn32_1286	-148	4.7	AATCGTGATATCGCTCACTATT
Shewanella sp W3-18-1	Sputw3181_2820	-148	4.7	AATCGTGATATCGCTCACTATT
Shewanella sp ANA-3	Shewana3_2890	-149	4.7	AATCGTGATATTGCTCACTATT
Shewanella sp MR-4	Shewmr4_2720	-149	4.7	AATCGTGATATTGCTCACTATT
Shewanella sp MR-7	Shewmr7_2791	-149	4.7	AATCGTGATATTGCTCACTATT
Shewanella baltica OS155	Sbal_1368	-149	4.7	AATCGTGATATTGCTCACTATT
Shewanella denitrificans OS217	Sden_2561	-143	3.8	AAAAGGGATATTTCTCACTAAT
Shewanella frigidimarina NCIMB 400	Sfri_2779	-148	4.7	TAATGTGATAATACTCACTATT
Shewanella amazonensis SB2B	Sama_2423	-89	4.5	AATCGAGACATAAATCACATAA
Shewanella loihica PV-4	Shew_2760	-150	4.4	AAACGTGAGATTGCTCACTATT
Shewanella pealeana ATCC 700345	Spea_2980	-146	4.2	AAACGTGAGATCGCTCACTCTT
Shewanella halifaxensis HAW-EB4	Shal_3069	-149	4.4	AAACGTGAGATTGCTCACTATT
Shewanella piezotolerans WP3	swp_3606	-293	4.6	AAACGTGAGATTGCTCACCTTT
Shewanella sediminis HAW-EB3	Ssed_3318	-151	4.7	AAATGTGAGATTGCTCACTATT
Shewanella woodyi ATCC 51908	Swoo_3466	-148	4.3	AAACGTGAGACTGCTCACTATT

Position: -127 Score: 4.5 Sequence: AATAGTGAGCAATATCACGATT Locus tag: Shew185_1355
	Shew185_1355	-127	4.5	AATAGTGAGCAATATCACGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1539
Ortholog function: Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Shewanella putrefaciens CN-32	Sputcn32_1287	-127	4.5	AATAGTGAGCGATATCACGATT
Shewanella sp W3-18-1	Sputw3181_2819	-127	4.5	AATAGTGAGCGATATCACGATT
Shewanella sp ANA-3	Shewana3_2889	-127	4.5	AATAGTGAGCAATATCACGATT
Shewanella sp MR-4	Shewmr4_2719	-127	4.5	AATAGTGAGCAATATCACGATT
Shewanella sp MR-7	Shewmr7_2790	-127	4.5	AATAGTGAGCAATATCACGATT
Shewanella baltica OS155	Sbal_1369	-128	4.5	AATAGTGAGCAATATCACGATT
Shewanella frigidimarina NCIMB 400	Sfri_2778	-313	4.7	AATAGTGAGTATTATCACATTA
Shewanella amazonensis SB2B	Sama_2422	-183	4.7	TTATGTGATTTATGTCTCGATT
Shewanella loihica PV-4	Shew_2759	-171	4.4	AATAGTGAGCAATCTCACGTTT
Shewanella pealeana ATCC 700345	Spea_2979	-113	4.3	AAGAGTGAGCGATCTCACGTTT
Shewanella halifaxensis HAW-EB4	Shal_3068	-114	4.4	AATAGTGAGCAATCTCACGTTT
Shewanella piezotolerans WP3	swp_3605	-144	4.2	AAAGGTGAGCAATCTCACGTTT
Shewanella sediminis HAW-EB3	Ssed_3317	-103	4.8	AATAGTGAGCAATCTCACATTT
Shewanella woodyi ATCC 51908	Swoo_3465	-159	4.4	AATAGTGAGCAGTCTCACGTTT

Position: -138 Score: 4.1 Sequence: TTCCTTGACTTAGCTCACACTT Locus tag: Shew185_1430
	Shew185_1430	-138	4.1	TTCCTTGACTTAGCTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1613
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO1613	-75	4	TTCCTTGATTTAGCTCACACTC
Shewanella putrefaciens CN-32	Sputcn32_1334	-142	4.1	TTCCTTGATTTAGATCACACTC
Shewanella sp W3-18-1	Sputw3181_2769	-142	4.1	TTCCTTGATTTAGATCACACTC
Shewanella sp ANA-3	Shewana3_2830	-136	4.1	TTCCTTGATTTAGATCACACTC
Shewanella sp MR-4	Shewmr4_2656	-136	4.1	TTCCTTGATTTAGATCACACTC
Shewanella sp MR-7	Shewmr7_2723	-136	4.1	TTCCTTGATTTAGATCACACTC
Shewanella baltica OS155	Sbal_1436	-138	4.1	TTCCTTGACTTAGCTCACACTT
Shewanella amazonensis SB2B	Sama_1125	-126	4.5	TTCCTTGATCCAGATCACACAT
Shewanella halifaxensis HAW-EB4	Shal_2994	-181	4.6	TTCCTTGATCTAGATCACACTA
Shewanella piezotolerans WP3	swp_3538	-271	4.4	TTCCTTGATCGAGATCACACAA

Position: -202 Score: 3.9 Sequence: AATTGTGATGACCATCATGGCT Locus tag: Shew185_1473
	Shew185_1473	-202	3.9	AATTGTGATGACCATCATGGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrF
Ortholog function: decaheme cytochrome c MtrF
Shewanella putrefaciens CN-32	Sputcn32_1380	-201	4.5	ATTTGCAATATTCATCACATTT
Shewanella putrefaciens CN-32	Sputcn32_1380	-201	4.5	ATTTGCAATATTCATCACATTT
Shewanella sp W3-18-1	Sputw3181_2721	-201	4.5	ATTTGCAATATTCATCACATTT
Shewanella sp W3-18-1	Sputw3181_2721	-201	4.5	ATTTGCAATATTCATCACATTT
Shewanella sp ANA-3	Shewana3_2787	-201	3.9	ATCTGCGAGATACCTCATATAT
Shewanella sp ANA-3	Shewana3_2787	-201	3.9	ATCTGCGAGATACCTCATATAT
Shewanella sp MR-4	Shewmr4_2613	-202	4	ATTTGTTACCCACCTCTTATTT
Shewanella sp MR-4	Shewmr4_2613	-202	4	ATTTGTTACCCACCTCTTATTT
Shewanella sp MR-7	Shewmr7_2680	-202	4	ATTTGTTACCCACCTCTTATTT
Shewanella sp MR-7	Shewmr7_2680	-202	4	ATTTGTTACCCACCTCTTATTT
Shewanella baltica OS155	Sbal_1478	-202	4.1	AATTGTGATGCTCATCATGGCT
Shewanella baltica OS155	Sbal_1478	-202	4.1	AATTGTGATGCTCATCATGGCT
Shewanella amazonensis SB2B	Sama_2228	-304	4.5	TTTTGTTAACTGCCTCACGTTT

Position: -268 Score: 4.5 Sequence: ATTTGTTAACTCCCTCACACTT Locus tag: Shew185_1478
	Shew185_1478	-268	4.5	ATTTGTTAACTCCCTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galU
Ortholog function: UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)
Shewanella amazonensis SB2B	Sama_2223	-304	4.5	TTTTGTTAACTGCCTCACGTTT

Position: -75 Score: 4.7 Sequence: AAGTGTGAGGGAGTTAACAAAT Locus tag: Shew185_1479
	Shew185_1479	-75	4.7	AAGTGTGAGGGAGTTAACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1	SO1666	-75	4.5	AACTGTGAGGGAGTTAACAAAA
Shewanella putrefaciens CN-32	Sputcn32_1386	-75	4.7	AAGTGTGAGGGAGTTAACAAAA
Shewanella sp W3-18-1	Sputw3181_2715	-75	4.7	AAGTGTGAGGGAGTTAACAAAA
Shewanella sp ANA-3	Shewana3_2781	-75	4.5	AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-4	Shewmr4_2607	-75	4.5	AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-7	Shewmr7_2674	-75	4.5	AACTGTGAGGGAGTTAACAAAA
Shewanella baltica OS155	Sbal_1484	-75	4.7	AAGTGTGAGGGAGTTAACAAAT
Shewanella denitrificans OS217	Sden_2595	-61	4.1	AATTGTGCGCCATGGCACACTA
Shewanella frigidimarina NCIMB 400	Sfri_1328	-74	4.5	AACTGTGAGGGAGTTAACAAAA
Shewanella amazonensis SB2B	Sama_2222	-76	4.6	AAACGTGAGGCAGTTAACAAAA
Shewanella loihica PV-4	Shew_1435	-40	4.7	AAGTGTGATCCTGTTAACAAAC
Shewanella pealeana ATCC 700345	Spea_1448	-126	4.9	AACTGTGATCGGGTTAACAATT
Shewanella halifaxensis HAW-EB4	Shal_1531	-86	4.7	AACCGTGATCTAGTTAACAAAA
Shewanella piezotolerans WP3	swp_1650	-76	5	AACTGTGATCTGGTTAACAAAA
Shewanella sediminis HAW-EB3	Ssed_2930	-75	4.8	AACTGTGATGGAGTTAACAAAA
Shewanella woodyi ATCC 51908	Swoo_1715	-74	4.7	AAGTGTGAAGTGGTTAACAAAA

Position: -235 Score: 5 Sequence: AAATGTGATTTGGGTCACGCTA Locus tag: Shew185_1482
	Shew185_1482	-235	5	AAATGTGATTTGGGTCACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fahA
Ortholog function: Fumarylacetoacetate hydrolase family protein
Shewanella oneidensis MR-1	SO1670	-200	5.1	AAATGTGATTTTGTTCACGCTA
Shewanella putrefaciens CN-32	Sputcn32_1389	-229	5	AAATGTGATTTGTGTCACGCTA
Shewanella sp W3-18-1	Sputw3181_2712	-229	5	AAATGTGATTTGTGTCACGCTA
Shewanella sp ANA-3	Shewana3_2778	-197	5.1	AAATGTGATTTTGCTCACGCTA
Shewanella sp MR-4	Shewmr4_2604	-196	5.1	AAATGTGATTTTGCTCACGCTA
Shewanella sp MR-7	Shewmr7_2671	-196	5.1	AAATGTGATTTTGCTCACGCTA
Shewanella baltica OS155	Sbal_1487	-235	5	AAATGTGATTTTGGTCACGCTA
Shewanella denitrificans OS217	Sden_2592	-107	4.7	AAATGTGATTTTGCGCACGCTA
Shewanella frigidimarina NCIMB 400	Sfri_1331	-116	4.1	AAATGTGATTTGGTACTTACTA
Shewanella amazonensis SB2B	Sama_2219	-111	5	AATTGTGATTTGAGTCACGCTA
Shewanella loihica PV-4	Shew_1438	-130	4.4	GAGTGTGATTTGTATCACGCTA
Shewanella pealeana ATCC 700345	Spea_1451	-158	5.3	AAGTGTGATTTCGTTCACACTA
Shewanella halifaxensis HAW-EB4	Shal_1534	-144	4.5	CAGTGTGATTTATCTCACGCTA
Shewanella piezotolerans WP3	swp_1653	-140	5	TAGTGTGATTTAGCTCACGCTA
Shewanella sediminis HAW-EB3	Ssed_2927	-116	4.1	GAGCGTGATTCATGTCACACTA
Shewanella woodyi ATCC 51908	Swoo_1718	-133	5	TATTGTGATTTGTGTCACGCTA

Position: -158 Score: 3.8 Sequence: TTTCGTGATTTAGATCCCATGG Locus tag: Shew185_1485
	Shew185_1485	-158	3.8	TTTCGTGATTTAGATCCCATGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W precursor
Shewanella oneidensis MR-1	SO1673	-161	4.4	TAGCGTGATTTGGATCTCAATG
		-110	4.4	AATTTTGATTTGGATCAATAAT
Shewanella putrefaciens CN-32	Sputcn32_1392	-211	4.2	ATAAATGCTGCGTATCACATAA
		-158	4	TTTCGTGATTAGGATCTCAAGT
Shewanella sp W3-18-1	Sputw3181_2709	-211	4.2	ATAAATGCTGCGTATCACATAA
Shewanella sp ANA-3	Shewana3_2775	-107	3.8	AATCTTGATTTGGATCAATAAG
Shewanella baltica OS155	Sbal_1490	-158	4	TTTCGTGATTCAGCTCCCATGT
Shewanella denitrificans OS217	Sden_2589	-157	4.2	TTTTGTGAATTAGATCAAGACT
Shewanella frigidimarina NCIMB 400	Sfri_1334	-232	3.9	TCGCTTGATCAACCTCACAAAA
		-170	3.9	TTTTGTGATCCAAATCAACAGC
Shewanella amazonensis SB2B	Sama_1371	-56	4	AATTGTTACGGACGTAACAGAA
Shewanella pealeana ATCC 700345	Spea_2787	-159	4.4	TATTGTGATCTAGATCCTTTTA
Shewanella halifaxensis HAW-EB4	Shal_2887	-161	5.1	AAATGTGATCTTCATCGCCTTT
		-111	4.8	ATTTTTGATTCAGGTCAAATTT
Shewanella piezotolerans WP3	swp_3395	-214	4	TTGCGTGTTGTATGTCACCAAA
		-161	4.4	AAATGTGATCGCGATCACTGCT
Shewanella sediminis HAW-EB3	Ssed_1469	-158	4.5	TTTTGTGAGCTTGGTCATGTAT
		-108	3.7	TTAATTGATCTGGATCAATAAG
Shewanella woodyi ATCC 51908	Swoo_3207	-211	4.3	AATTATGACGTCGCTCACTAAA
		-158	4.5	AAGTGTGAGTTCGATCAAGTAT
		-108	3.9	TTTATTGATTTGGATCAATAAA

Position: -190 Score: 3.5 Sequence: TAGAAAGATCCAAGTCACACAT Locus tag: Shew185_1578
	Shew185_1578	-190	3.5	TAGAAAGATCCAAGTCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1	SO1778	-248	3.7	TGTTGTTTTTTTGCTCTCAATT
		-190	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella putrefaciens CN-32	Sputcn32_1478	-190	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella sp W3-18-1	Sputw3181_2623	-190	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella sp ANA-3	Shewana3_2676	-189	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-4	Shewmr4_2510	-189	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-7	Shewmr7_2578	-189	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella baltica OS155	Sbal_1589	-190	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella frigidimarina NCIMB 400	Sfri_2637	-164	3.8	TAGGCTGATCATCATCACACAA
Shewanella amazonensis SB2B	Sama_1208	-230	3.9	TTTTTTGATCTGAAACAGCTTT
		-178	3.6	TAGCCGGATCCAGTTCACACAT
Shewanella loihica PV-4	Shew_2525	-179	3.6	TAGAAAGATCTCGGTCACACAT
Shewanella halifaxensis HAW-EB4	Shal_2784	-264	4	TTTTATTACATTTATCACGTAT
Shewanella sediminis HAW-EB3	Ssed_1525	-191	4	TAGGCTGATCTAGGTCACACAT
Shewanella woodyi ATCC 51908	Swoo_3125	-288	3.7	ATGAGTTACAACTTTCACACAT

Position: -166 Score: 3.9 Sequence: TAGTCAGATCTCAGTCACATTA Locus tag: Shew185_1579
	Shew185_1579	-166	3.9	TAGTCAGATCTCAGTCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omcA
Ortholog function: surface localized decaheme cytochrome c lipoprotein, OmcA
Shewanella sp ANA-3	Shewana3_2675	-295	4.4	TTATGTGACAAAAATCTCAATG
		-172	4.3	AAGTGAGAACAAGATCACACTT
Shewanella sp MR-4	Shewmr4_2509	-295	4.4	TTATGTGACAAAAATCTCAATG
		-172	4.3	AAGTGAGAACAAGATCACACTT
Shewanella sp MR-7	Shewmr7_2577	-295	4.4	TTATGTGACAAAAATCTCAATG
		-172	4.3	AAGTGAGAACAAGATCACACTT
Shewanella baltica OS155	Sbal_1590	-304	3.8	TTATGTGACAAAAATACCAATG
		-181	4.8	AAACGTGATCAACATCACGCTT
Shewanella amazonensis SB2B	Sama_1210	-189	3.9	CGGCGTGACACTCATCACACTT

Position: -4 Score: 3.7 Sequence: AAATATGAACAAGTTTGCAAAA Locus tag: Shew185_1580
	Shew185_1580	-4	3.7	AAATATGAACAAGTTTGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrF
Ortholog function: surface localized decaheme cytochrome c lipoprotein, MtrF
Shewanella oneidensis MR-1	SO1780	-339	3.8	TTATGTGACAAAAATCTCTATG
Shewanella sp ANA-3	Shewana3_2674	-295	4.4	TTATGTGACAAAAATCTCAATG
		-172	4.3	AAGTGAGAACAAGATCACACTT
Shewanella sp MR-4	Shewmr4_2508	-295	4.4	TTATGTGACAAAAATCTCAATG
		-172	4.3	AAGTGAGAACAAGATCACACTT
Shewanella sp MR-7	Shewmr7_2576	-295	4.4	TTATGTGACAAAAATCTCAATG
		-172	4.3	AAGTGAGAACAAGATCACACTT
Shewanella baltica OS155	Sbal_1591	-304	3.8	TTATGTGACAAAAATACCAATG
		-181	4.8	AAACGTGATCAACATCACGCTT
Shewanella amazonensis SB2B	Sama_1211	-189	3.9	CGGCGTGACACTCATCACACTT
Shewanella loihica PV-4	Shew_2521	-260	4.5	TTATGTGACAGATATCTCAATC
		-170	5.3	CAACGTGATCTAGATCACATAT
Shewanella pealeana ATCC 700345	Spea_2694	-286	4.1	TTATGTGACAAAACTCTCAACT
		-197	5.4	AAGTGTGATACGCATCACATAA
Shewanella halifaxensis HAW-EB4	Shal_2780	-305	4.5	TTATGTGATAAATATCTCAACT
		-184	4.6	AAACTTGACACAGATCACACTT
Shewanella piezotolerans WP3	swp_3274	-308	4.2	TTATGTGACAAATCTCTCAACT
		-185	4.6	CAGTGTGACGTAGATCACGCTT
Shewanella sediminis HAW-EB3	Ssed_1528	-291	4	TTATGTGACAAAAGTCTCAACT
		-174	4.8	TAGCGTGACCAAGATCACACTT

Position: -304 Score: 3.8 Sequence: TTATGTGACAAAAATACCAATG Position: -181 Score: 4.6 Sequence: AAACGTGATCAAGGTCACGCTT Locus tag: Shew185_1582
	Shew185_1582	-304	3.8	TTATGTGACAAAAATACCAATG
		-181	4.6	AAACGTGATCAAGGTCACGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrD
Ortholog function: periplasmic decaheme cytochrome c, MtrD
Shewanella oneidensis MR-1	SO1782	-339	3.8	TTATGTGACAAAAATCTCTATG
Shewanella sp ANA-3	Shewana3_2672	-295	4.4	TTATGTGACAAAAATCTCAATG
		-172	4.3	AAGTGAGAACAAGATCACACTT
Shewanella sp MR-4	Shewmr4_2506	-295	4.4	TTATGTGACAAAAATCTCAATG
		-172	4.3	AAGTGAGAACAAGATCACACTT
Shewanella sp MR-7	Shewmr7_2574	-295	4.4	TTATGTGACAAAAATCTCAATG
		-172	4.3	AAGTGAGAACAAGATCACACTT
Shewanella baltica OS155	Sbal_1593	-304	3.8	TTATGTGACAAAAATACCAATG
		-181	4.8	AAACGTGATCAACATCACGCTT
Shewanella amazonensis SB2B	Sama_1213	-189	3.9	CGGCGTGACACTCATCACACTT
Shewanella loihica PV-4	Shew_2519	-260	4.5	TTATGTGACAGATATCTCAATC
		-170	5.3	CAACGTGATCTAGATCACATAT
Shewanella pealeana ATCC 700345	Spea_2692	-286	4.1	TTATGTGACAAAACTCTCAACT
		-197	5.4	AAGTGTGATACGCATCACATAA
Shewanella halifaxensis HAW-EB4	Shal_2778	-305	4.5	TTATGTGATAAATATCTCAACT
		-184	4.6	AAACTTGACACAGATCACACTT
Shewanella piezotolerans WP3	swp_3272	-308	4.2	TTATGTGACAAATCTCTCAACT
		-185	4.6	CAGTGTGACGTAGATCACGCTT
Shewanella sediminis HAW-EB3	Ssed_1530	-291	4	TTATGTGACAAAAGTCTCAACT
		-174	4.8	TAGCGTGACCAAGATCACACTT

Position: -276 Score: 4.7 Sequence: AAGCGTGACCTTGATCACGTTT Position: -153 Score: 3.8 Sequence: CATTGGTATTTTTGTCACATAA Position: -91 Score: 3.9 Sequence: AATCTTGATCTAGGTAAAGTTA Locus tag: Shew185_1583
	Shew185_1583	-276	4.7	AAGCGTGACCTTGATCACGTTT
		-153	3.8	CATTGGTATTTTTGTCACATAA
		-91	3.9	AATCTTGATCTAGGTAAAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Shewanella oneidensis MR-1	SO1783	-153	4	CATAGAGATTTTTGTCACATAA
Shewanella putrefaciens CN-32	Sputcn32_1480	-155	4.6	CATTGGGATTTTTATCACATAA
Shewanella sp W3-18-1	Sputw3181_2621	-155	4.6	CATTGGGATTTTTATCACATAA
Shewanella sp ANA-3	Shewana3_2671	-276	5	AAGTGTGATCTTGTTCTCACTT
		-153	4.4	CATTGAGATTTTTGTCACATAA
Shewanella sp MR-4	Shewmr4_2505	-276	5	AAGTGTGATCTTGTTCTCACTT
		-153	4.4	CATTGAGATTTTTGTCACATAA
Shewanella sp MR-7	Shewmr7_2573	-276	5	AAGTGTGATCTTGTTCTCACTT
		-153	4.4	CATTGAGATTTTTGTCACATAA
Shewanella baltica OS155	Sbal_1594	-276	5	AAGCGTGATGTTGATCACGTTT
Shewanella denitrificans OS217	Sden_2415	-148	3.9	ATCTGCGGTATTTATCACATAA
Shewanella amazonensis SB2B	Sama_1214	-228	3.8	AAGTGTGATGAGTGTCACGCCG
Shewanella loihica PV-4	Shew_2518	-245	5.2	ATATGTGATCTAGATCACGTTG
		-155	4.2	GATTGAGATATCTGTCACATAA
Shewanella pealeana ATCC 700345	Spea_2691	-247	5.5	TTATGTGATGCGTATCACACTT
		-158	4.2	AGTTGAGAGTTTTGTCACATAA
Shewanella halifaxensis HAW-EB4	Shal_2777	-279	4.7	AAGTGTGATCTGTGTCAAGTTT
		-158	4.7	AGTTGAGATATTTATCACATAA
Shewanella piezotolerans WP3	swp_3271	-280	4.6	AAGCGTGATCTACGTCACACTG
		-157	4.2	AGTTGAGAGATTTGTCACATAA
Shewanella sediminis HAW-EB3	Ssed_1531	-275	4.9	AAGTGTGATCTTGGTCACGCTA
		-158	4.3	AGTTGAGACTTTTGTCACATAA
Shewanella woodyi ATCC 51908	Swoo_3123	-272	4.7	AATCGTGACTTATATCACTTAA
		-157	4.2	AGTTGGGACTTTTGTCACATAA

Position: -156 Score: 4.2 Sequence: AACTGAGATCCTGATCACACAG Locus tag: Shew185_1586
	Shew185_1586	-156	4.2	AACTGAGATCCTGATCACACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1787
Ortholog function: probable membrane protein YPO2362
Shewanella oneidensis MR-1	SO1787	-149	4.2	AACTGAGATCCTGATCACACAG
Shewanella putrefaciens CN-32	Sputcn32_1483	-154	4	AACTGAGATCGGGATCACATGA
Shewanella sp W3-18-1	Sputw3181_2618	-154	4	AACTGAGATCGGGATCACATGA
Shewanella sp ANA-3	Shewana3_2668	-151	4.4	AACTGAGATCCTGATCACATAG
Shewanella sp MR-4	Shewmr4_2502	-151	3.7	AACTGAGATCCTGATCACACCG
Shewanella sp MR-7	Shewmr7_2570	-151	3.7	AACTGAGATCCTGATCACACCG
Shewanella baltica OS155	Sbal_1597	-156	4.2	AACTGAGATCCTGATCACACAG

Position: -149 Score: 4.3 Sequence: CTGTGTGATCAGGATCTCAGTT Locus tag: Shew185_1587
	Shew185_1587	-149	4.3	CTGTGTGATCAGGATCTCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: miaE
Ortholog function: tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)
Shewanella oneidensis MR-1	SO1788	-151	4.3	CTGTGTGATCAGGATCTCAGTT
		-12	3.7	TTGAGTGATCCCATGCAACAAT
Shewanella putrefaciens CN-32	Sputcn32_1484	-105	4.5	TCATGTGATCCCGATCTCAGTT
Shewanella sp W3-18-1	Sputw3181_2617	-105	4.5	TCATGTGATCCCGATCTCAGTT
Shewanella sp ANA-3	Shewana3_2667	-150	4.5	CTATGTGATCAGGATCTCAGTT
Shewanella sp MR-4	Shewmr4_2501	-151	4.1	CGGTGTGATCAGGATCTCAGTT
Shewanella sp MR-7	Shewmr7_2569	-150	4.1	CGGTGTGATCAGGATCTCAGTT
Shewanella baltica OS155	Sbal_1598	-149	4.3	CTGTGTGATCAGGATCTCAGTT

Position: -143 Score: 4.5 Sequence: TTTTGTGATGTTAATCGACATA Locus tag: Shew185_1620
	Shew185_1620	-143	4.5	TTTTGTGATGTTAATCGACATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1821
Ortholog function: outer membrane porin, putative
Shewanella putrefaciens CN-32	Sputcn32_1515	-140	4.4	TTTTGTGATGTTAATCTACATA
Shewanella sp W3-18-1	Sputw3181_2585	-140	4.4	TTTTGTGATGTTAATCTACATA
Shewanella sp ANA-3	Shewana3_2628	-140	4.4	TTTTGTGATGTTTCTCTACATA
Shewanella sp MR-4	Shewmr4_2468	-140	4.4	TTTTGTGATGTTTCTCTACATA
Shewanella sp MR-7	Shewmr7_2536	-140	4.4	TTTTGTGATGTTTCTCTACATA
Shewanella baltica OS155	Sbal_1631	-143	4.5	TTTTGTGATGTTAATCGACATA
Shewanella frigidimarina NCIMB 400	Sfri_3603	-307	4.4	AGTCGCGATCTACATCAAATAA
		-140	4.2	TTATATGAGATATATCGCCTTT
Shewanella amazonensis SB2B	Sama_1251	-168	3.9	TTATCTGATAGAGATTTCAATT
		-140	4.5	TGTTGTGATTTTTAACACGTTT

Position: -94 Score: 4.2 Sequence: ATCTGTGAATTAAGTCACACAG Locus tag: Shew185_1664
	Shew185_1664	-94	4.2	ATCTGTGAATTAAGTCACACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2806
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO2806	-95	4.3	TCTTGTGAATTGAGTCACATAG
Shewanella putrefaciens CN-32	Sputcn32_1554	-95	4	TCTTGTGAATTGAGTCACAGAG
Shewanella sp W3-18-1	Sputw3181_2545	-95	4	TCTTGTGAATTGAGTCACAGAG
Shewanella sp ANA-3	Shewana3_2588	-95	4	TCTTGTGAATTGAGTCACAGAG
Shewanella sp MR-4	Shewmr4_2426	-95	4	TCTTGTGAATTGAGTCACAGAG
Shewanella sp MR-7	Shewmr7_2496	-95	4	TCTTGTGAATTGAGTCACAGAG
Shewanella baltica OS155	Sbal_1679	-94	4.2	ATCTGTGAATTAAGTCACACAG
Shewanella denitrificans OS217	Sden_1453	-35	3.9	ATATTTTATGCCGTTCACTCAT
Shewanella amazonensis SB2B	Sama_1287	-85	4	AATTGTGAAGCCAGTCACGGTG
Shewanella pealeana ATCC 700345	Spea_1483	-84	4.4	AATTGTGAATAACGTCACACAG
Shewanella halifaxensis HAW-EB4	Shal_1567	-84	4.7	AATTGTGAACAACATCACACAG
Shewanella piezotolerans WP3	swp_1689	27	4.3	AACTGTGAAAGGTATCACACAC
Shewanella sediminis HAW-EB3	Ssed_2877	-82	4.5	TAATGTGAATGGCGTCACACAG
Shewanella woodyi ATCC 51908	Swoo_1771	-81	4.6	TATTGTGAAAGTCATCACACAG

Position: -157 Score: 3.8 Sequence: ATTCGTGAATAGACTCACTCTA Position: -82 Score: 4.2 Sequence: AAACGCGAGCTAACTCGCATTT Locus tag: Shew185_1679
	Shew185_1679	-157	3.8	ATTCGTGAATAGACTCACTCTA
		-82	4.2	AAACGCGAGCTAACTCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase (EC 3.5.4.5)
Shewanella oneidensis MR-1	SO2791	-82	4.1	AAACGCGAACTAACTCGCATTT
Shewanella putrefaciens CN-32	Sputcn32_1568	-131	3.8	TATGGTGAAATCGGTCAAATAC
		-82	4.2	AAACGCGAGCTAACTCGCATTT
Shewanella sp W3-18-1	Sputw3181_2531	-131	3.8	TATGGTGAAATCGGTCAAATAC
		-82	4.2	AAACGCGAGCTAACTCGCATTT
Shewanella sp ANA-3	Shewana3_2573	-82	4.1	AAACGCGAACTAACTCGCATTT
Shewanella sp MR-4	Shewmr4_2411	-82	4.1	AAACGCGAACTAACTCGCATTT
Shewanella sp MR-7	Shewmr7_2481	-82	4.1	AAACGCGAACTAACTCGCATTT
Shewanella baltica OS155	Sbal_1694	-157	3.8	ATTCGTGAATAGACTCACTCTA
		-82	4.2	AAACGCGAGCTAACTCGCATTT
Shewanella frigidimarina NCIMB 400	Sfri_1637	-44	3.8	AAATTTTATTTTTATCCAATTT
Shewanella amazonensis SB2B	Sama_1974	-82	4	AAATGGGATTAGACTCCCATTA
Shewanella halifaxensis HAW-EB4	Shal_1783	-81	3.9	AACTGAGATCTTCATCTCATTC
Shewanella piezotolerans WP3	swp_3037	-82	4.1	AAGTGCGATCTCTGTCGCATTC
Shewanella sediminis HAW-EB3	Ssed_2618	-82	3.9	AAATGGGAGCTGGATCTCATCA
Shewanella woodyi ATCC 51908	Swoo_2048	-82	3.9	AAATGGGAGAAAGATCCCATTA

Position: -124 Score: 4.6 Sequence: TATTGTGATAAGAATCACTTTC Locus tag: Shew185_1719
	Shew185_1719	-124	4.6	TATTGTGATAAGAATCACTTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2773
Ortholog function: hypothetical protein
Shewanella sp ANA-3	Shewana3_2556	-125	4.1	AATTGTGCCGGATATCACTTTC
Shewanella sp MR-4	Shewmr4_2393	-125	4.1	AATTGTGCCGGATATCACTTTC
Shewanella sp MR-7	Shewmr7_2463	-125	4.1	AATTGTGCCGGATATCACTTTC
Shewanella pealeana ATCC 700345	Spea_2491	-172	4.9	ATATTTGAAGTGTTTCACATAA
Shewanella halifaxensis HAW-EB4	Shal_1780	-174	4.7	ATATTTGAGTTGATTCACAAAA

Position: -227 Score: 4.2 Sequence: ATTTAAGACCAATATCACATTT Position: -100 Score: 3.6 Sequence: TTTTCAGATATTTTTCAGATAA Locus tag: Shew185_1733
	Shew185_1733	-227	4.2	ATTTAAGACCAATATCACATTT
		-100	3.6	TTTTCAGATATTTTTCAGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2757
Ortholog function: Histidine permease YuiF
Shewanella oneidensis MR-1	SO2757	-225	4.2	ATTTAAGACCAATATCACATTT
Shewanella putrefaciens CN-32	Sputcn32_1598	-225	4.2	ATTTAAGACCAATATCACATTT
Shewanella sp W3-18-1	Sputw3181_2424	-225	4.2	ATTTAAGACCAATATCACATTT
Shewanella sp ANA-3	Shewana3_2542	-225	4.2	ATTTAAGACCAATATCACATTT
Shewanella sp MR-4	Shewmr4_2377	-225	4.2	ATTTAAGACCAATATCACATTT
Shewanella sp MR-7	Shewmr7_2449	-225	4.2	ATTTAAGACCAATATCACATTT
Shewanella baltica OS155	Sbal_1737	-227	4.2	ATTTAAGACCAATATCACATTT
Shewanella denitrificans OS217	Sden_2092	-208	4.3	ATATGCGAGAGGGATCACAATC
Shewanella frigidimarina NCIMB 400	Sfri_1454	-191	3.5	TTAAATAATAAGTTTCAAATAT
Shewanella amazonensis SB2B	Sama_2095	-210	3.9	AATTTGGAGGAATATCACACAA
Shewanella loihica PV-4	Shew_1515	-230	4	ATTTGGGATCATTGTCACTTTT
Shewanella halifaxensis HAW-EB4	Shal_1682	-225	3.9	ATTTGATATCAATATCACTTTT
Shewanella piezotolerans WP3	swp_1820	-77	4.1	ATTTGAGAGCAATATCACTTTT
Shewanella sediminis HAW-EB3	Ssed_1847	-226	4.5	ATTTGGGATCAATATCACCTTT
Shewanella woodyi ATCC 51908	Swoo_2742	-155	4	TTTAGTGCTGTTATTTACACTT

Position: -183 Score: 4.6 Sequence: AAATGTGATATTGGTCTTAAAT Locus tag: Shew185_1734
	Shew185_1734	-183	4.6	AAATGTGATATTGGTCTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Swoo_2741
Ortholog function: Alkyl hydroperoxide reductase subunit C-like protein
Shewanella putrefaciens CN-32	Sputcn32_1599	-183	4.6	AAATGTGATATTGGTCTTAAAT
Shewanella sp W3-18-1	Sputw3181_2423	-183	4.6	AAATGTGATATTGGTCTTAAAT
Shewanella sp ANA-3	Shewana3_2541	-167	4.6	AAATGTGATATTGGTCTTAAAT
Shewanella sp MR-4	Shewmr4_2376	-167	4.6	AAATGTGATATTGGTCTTAAAT
Shewanella sp MR-7	Shewmr7_2448	-167	4.6	AAATGTGATATTGGTCTTAAAT
Shewanella baltica OS155	Sbal_1738	-183	4.6	AAATGTGATATTGGTCTTAAAT
Shewanella denitrificans OS217	Sden_2091	-88	4.7	GATTGTGATCCCTCTCGCATAT
Shewanella amazonensis SB2B	Sama_2094	-115	4.3	TTGTGTGATATTCCTCCAAATT
Shewanella loihica PV-4	Shew_1516	-105	4.1	AAAAGTGACAATGATCCCAAAT
Shewanella halifaxensis HAW-EB4	Shal_1683	-108	4.4	AAAAGTGATATTGATATCAAAT
Shewanella piezotolerans WP3	swp_1821	-108	4.7	AAAAGTGATATTGCTCTCAAAT
Shewanella sediminis HAW-EB3	Ssed_1848	-106	4.4	AAAGGTGATATTGATCCCAAAT

Position: -233 Score: 4.7 Sequence: AAAGGTGATCTATATCACTTAA Locus tag: Shew185_1737
	Shew185_1737	-233	4.7	AAAGGTGATCTATATCACTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2753
Ortholog function: prolyl endopeptidase (EC 3.4.21.26)
Shewanella oneidensis MR-1	SO2753	-235	4.7	TTAAGTGATCTGCCTCACTTAA
Shewanella putrefaciens CN-32	Sputcn32_1602	-234	4.8	TTAAGTGATCTAGCTCACTTAA
Shewanella sp W3-18-1	Sputw3181_2420	-234	4.8	TTAAGTGATCTAGCTCACTTAA
Shewanella sp ANA-3	Shewana3_2536	-234	4.8	TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-4	Shewmr4_2373	-234	4.8	TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-7	Shewmr7_2445	-234	4.8	TTAAGTGATCTGGCTCACTTAA
Shewanella baltica OS155	Sbal_1741	-233	4.7	AAAGGTGATCTATATCACTTAA
Shewanella amazonensis SB2B	Sama_2091	-226	4.7	TTGTGTGATCTTGCGCACGTTA
Shewanella loihica PV-4	Shew_1522	-276	3.5	ATTTGCGCTTGATTACGCAAAA
Shewanella pealeana ATCC 700345	Spea_2569	-251	3.9	TAGTGTGGGTTTAGTCACACTT
Shewanella halifaxensis HAW-EB4	Shal_1686	-266	3.6	TATTGCGGGGTTTGTCACGTTT
Shewanella piezotolerans WP3	swp_1825	-248	3.6	TTGTGAGTCCTTAATCACGTTT
Shewanella sediminis HAW-EB3	Ssed_1852	-257	3.8	AAGTGTGATCTTGGTCGGTAAA
Shewanella woodyi ATCC 51908	Swoo_2736	-259	3.7	TAGTGTGATCTAGGTTGGGTAA

Position: -105 Score: 4.7 Sequence: TTAGGTGATGTGGGTCACGTTT Locus tag: Shew185_1765
	Shew185_1765	-105	4.7	TTAGGTGATGTGGGTCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yceI
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32	Sputcn32_1651	-70	3.8	TAAATGGATGTAAATCACGATT
Shewanella sp W3-18-1	Sputw3181_2375	-70	3.8	TAAATGGATGTAAATCACGATT
Shewanella sp ANA-3	Shewana3_1628	-102	4.6	TTAGGTGATCTTTGTCACAGAT
Shewanella sp MR-4	Shewmr4_1561	-103	4.8	TTAGGTGATCTTTGTCACAAAT
Shewanella sp MR-7	Shewmr7_1636	-103	4.8	TTAGGTGATCTTTGTCACAAAT
Shewanella baltica OS155	Sbal_1772	-105	4.7	TTAGGTGATGTGGGTCACGTTT
Shewanella pealeana ATCC 700345	Spea_2476	-166	3.8	TTACGTGCTGAATTGCAAAATT
		-69	3.8	AATTGTTACGCATCTTACGCTA
Shewanella piezotolerans WP3	swp_3020	-42	3.8	TACATTGATATCTATCACTATT

Position: -90 Score: 4.3 Sequence: AACAATGATTCACATCACAAAT Locus tag: Shew185_1775
	Shew185_1775	-90	4.3	AACAATGATTCACATCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodB
Ortholog function: superoxide dismutase [Fe] (EC 1.15.1.1)
Shewanella oneidensis MR-1	SO2881	-91	4.3	AACAATGATTCACATCACAAAT
Shewanella putrefaciens CN-32	Sputcn32_1687	-91	4.3	AACAATGATTCACATCACAAAT
Shewanella sp W3-18-1	Sputw3181_2338	-91	4.3	AACAATGATTCACATCACAAAT
Shewanella sp ANA-3	Shewana3_1639	-91	4.3	AACAATGATTCACATCACAAAT
Shewanella sp MR-4	Shewmr4_1572	-91	4.3	AACAATGATTCACATCACAAAT
Shewanella sp MR-7	Shewmr7_1647	-91	4.3	AACAATGATTCACATCACAAAT
Shewanella baltica OS155	Sbal_1782	-90	4.3	AACAATGATTCACATCACAAAT
Shewanella denitrificans OS217	Sden_1639	-106	4.3	AACAATGATGCACATCACAAAA
Shewanella frigidimarina NCIMB 400	Sfri_1747	-102	4.2	AACAATGATTCACATCACAAAA
Shewanella amazonensis SB2B	Sama_1920	-91	4.2	AAGAATGATTCACATCACAGAT
Shewanella loihica PV-4	Shew_1834	-89	3.8	AACAATGATTCACATCACAACT
Shewanella halifaxensis HAW-EB4	Shal_2336	-93	3.7	AACAATGATACACTTCACAACT

Position: -156 Score: 4.5 Sequence: ATTTGTGATGTGAATCATTGTT Locus tag: Shew185_1776
	Shew185_1776	-156	4.5	ATTTGTGATGTGAATCATTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: Probable monothiol glutaredoxin ydhD
Shewanella oneidensis MR-1	SO2880	-157	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella putrefaciens CN-32	Sputcn32_1688	-156	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella sp W3-18-1	Sputw3181_2337	-156	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella sp ANA-3	Shewana3_1640	-157	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella sp MR-4	Shewmr4_1573	-157	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella sp MR-7	Shewmr7_1648	-157	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella baltica OS155	Sbal_1783	-156	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella denitrificans OS217	Sden_1640	-137	4.5	TTTTGTGATGTGCATCATTGTT
Shewanella frigidimarina NCIMB 400	Sfri_1748	-155	4.5	TTTTGTGATGTGAATCATTGTT
Shewanella amazonensis SB2B	Sama_1919	-173	4.2	ATCTGTGATGTGAATCATTCTT
Shewanella loihica PV-4	Shew_1835	-164	4.2	AGTTGTGATGTGAATCATTGTT
Shewanella pealeana ATCC 700345	Spea_1964	-154	3.6	ACTTGTGAAGTGTATCATTGTT
Shewanella halifaxensis HAW-EB4	Shal_2335	-154	3.9	AGTTGTGAAGTGTATCATTGTT
Shewanella piezotolerans WP3	swp_2753	-153	3.6	ACTTGTGAAGTGTATCATTGTT

Position: -184 Score: 4.4 Sequence: TTACATGATGCAGCGCACATTT Locus tag: Shew185_1786
	Shew185_1786	-184	4.4	TTACATGATGCAGCGCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cctA
Ortholog function: cytochrome c3
Shewanella oneidensis MR-1	SO2727	-184	4.4	TTACATGATGCAGCGCACATTT
Shewanella putrefaciens CN-32	Sputcn32_2333	-183	4.4	TTACATGATGCAGCGCACATTT
Shewanella sp W3-18-1	Sputw3181_1675	-183	4.4	TTACATGATGCAGCGCACATTT
Shewanella sp ANA-3	Shewana3_2511	-183	4.4	TTACATGATGCAGCGCACATTT
Shewanella sp MR-4	Shewmr4_2318	-184	4.4	TTACATGATGCAGCGCACATTT
Shewanella sp MR-7	Shewmr7_2388	-184	4.4	TTACATGATGCAGCGCACATTT
Shewanella baltica OS155	Sbal_1793	-184	4.4	TTACATGATGCAGCGCACATTT
Shewanella loihica PV-4	Shew_1724	-224	4.6	TAGTGTGACGCAGATCATGTTT
		-174	4.7	ATATTTGATTAAGTGCACATTT

Position: -168 Score: 4.4 Sequence: TTATGTGATCTAAGTCAATGAT Locus tag: Shew185_1885
	Shew185_1885	-168	4.4	TTATGTGATCTAAGTCAATGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemB-1
Ortholog function: porphobilinogen synthase (EC 4.2.1.24)
Shewanella oneidensis MR-1	SO2587	-197	4	GTTTGTGATCGCTATCACTAAC
Shewanella putrefaciens CN-32	Sputcn32_1755	-144	4.6	CAATGTGATATAAGTCACTTAA
Shewanella sp W3-18-1	Sputw3181_2270	-144	4.6	CAATGTGATATAAGTCACTTAA
Shewanella sp ANA-3	Shewana3_2392	-222	4	GTTTGTGATCGCCATCACTAAC
Shewanella sp MR-4	Shewmr4_2183	-217	4	GTTTGTGATCGCCATCACTAAC
Shewanella sp MR-7	Shewmr7_2260	-193	4	GTTTGTGATCGCCATCACTAAC
Shewanella baltica OS155	Sbal_1858	-168	4.4	TTATGTGATCTAAGTCAATGAT

Position: -205 Score: 4.3 Sequence: ATCATTGACTTAGATCACATAA Locus tag: Shew185_1886
	Shew185_1886	-205	4.3	ATCATTGACTTAGATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2586
Ortholog function: inactive homolog of metal-dependent proteases, putative molecular chaperone
Shewanella oneidensis MR-1	SO2586	-177	4.1	GTTAGTGATAGCGATCACAAAC
Shewanella putrefaciens CN-32	Sputcn32_1756	-269	4.7	TTAAGTGACTTATATCACATTG
Shewanella sp W3-18-1	Sputw3181_2269	-269	4.7	TTAAGTGACTTATATCACATTG
Shewanella sp ANA-3	Shewana3_2391	-176	4.2	GTTAGTGATGGCGATCACAAAC
Shewanella sp MR-4	Shewmr4_2182	-177	4.2	GTTAGTGATGGCGATCACAAAC
Shewanella sp MR-7	Shewmr7_2259	-178	4.2	GTTAGTGATGGCGATCACAAAC
Shewanella baltica OS155	Sbal_1859	-205	4.3	ATCATTGACTTAGATCACATAA

Position: -156 Score: 5.1 Sequence: TTATGTGATGATGATCAAAATT Locus tag: Shew185_1891
	Shew185_1891	-156	5.1	TTATGTGATGATGATCAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD1
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella oneidensis MR-1	SO2581	-155	5.1	TTATGTGATGATGATCAAAATT
Shewanella putrefaciens CN-32	Sputcn32_1761	-154	5.1	TTATGTGATGATGATCAAAATT
Shewanella sp W3-18-1	Sputw3181_2264	-154	5.1	TTATGTGATGATGATCAAAATT
Shewanella sp ANA-3	Shewana3_2386	-155	5.1	TTATGTGATGATGATCAAAATT
Shewanella sp MR-4	Shewmr4_2177	-155	5.1	TTATGTGATGATGATCAAAATT
Shewanella sp MR-7	Shewmr7_2254	-155	5.1	TTATGTGATGATGATCAAAATT
Shewanella baltica OS155	Sbal_1864	-156	5.1	TTATGTGATGATGATCAAAATT
Shewanella denitrificans OS217	Sden_1625	-189	4.1	TTATGTGATTATGGGCCCAAAT
Shewanella frigidimarina NCIMB 400	Sfri_1733	-165	4.7	TTATGTGATTATGATCGAAAAT
Shewanella amazonensis SB2B	Sama_1934	-140	4.8	TTATGTGATGATTGTCAAAAAT
Shewanella loihica PV-4	Shew_2188	-149	4.9	TTGTGTGATGATGTTCAAAATT
Shewanella pealeana ATCC 700345	Spea_2448	-156	5	TTATGTGATGATAATCAAAATT
Shewanella halifaxensis HAW-EB4	Shal_1832	-155	5	TTATGTGATGATAATCAAAATT
Shewanella piezotolerans WP3	swp_2289	-153	5	ATATGTGATGATAATCAAAATT
Shewanella sediminis HAW-EB3	Ssed_2523	-151	5	TTATGTGATGATGATCATAATT
Shewanella woodyi ATCC 51908	Swoo_2110	-153	5.1	TTATGTGATGATGTTCAAAATT

Position: -229 Score: 3.9 Sequence: TTAAGTGACCGATTTCATCCAA Position: -167 Score: 3.7 Sequence: AAATTAGATCTGCGTCATGTTA Position: -107 Score: 4 Sequence: ATTCTTGATATACATCAATAAT Locus tag: Shew185_1915
	Shew185_1915	-229	3.9	TTAAGTGACCGATTTCATCCAA
		-167	3.7	AAATTAGATCTGCGTCATGTTA
		-107	4	ATTCTTGATATACATCAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyaA
Ortholog function: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Shewanella oneidensis MR-1	SO2099	-105	4	ATTCTTGATATGCATCAATAAT
Shewanella putrefaciens CN-32	Sputcn32_2088	-167	3.7	AAATTAGATCTGCGTCATGTTA
		-107	4	ATTCTTGATATACATCAATAAT
Shewanella sp W3-18-1	Sputw3181_1924	-167	3.7	AAATTAGATCTGCGTCATGTTA
		-107	4	ATTCTTGATATACATCAATAAT
Shewanella sp ANA-3	Shewana3_1880	-166	3.9	AAATTAGATCTGCATCATGTTA
		-106	4.2	ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-4	Shewmr4_1822	-166	3.9	AAATTAGATCTGCATCATGTTA
		-106	4.2	ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-7	Shewmr7_2155	-166	3.9	AAATTAGATCTGCATCATGTTA
		-106	4.2	ATTCTTGATATGCATCAAGAAT
Shewanella baltica OS155	Sbal_1889	-229	3.9	TTAAGTGACCGATTTCATCCAA
		-167	3.7	AAATTAGATCTACGTCATGTTA
		-107	4.2	ATTCTTGATATACATCAAGAAT
Shewanella frigidimarina NCIMB 400	Sfri_2103	-174	3.8	TTTTGTTAACTTGATCAACATC
		-168	4.4	TAACTTGATCAACATCATAAAT
Shewanella amazonensis SB2B	Sama_1679	-172	3.4	AAGCATGACACACCTCATGTTA
Shewanella loihica PV-4	Shew_1765	-164	3.8	AAACTTGATCCAGCTCATAGCT
		-103	3.7	AATGTTGACATACATCAACATT
Shewanella pealeana ATCC 700345	Spea_2033	-211	4.6	TTACGTGACCACGATCACCTTT
Shewanella halifaxensis HAW-EB4	Shal_2261	-212	5	TTACGTGATCTCCATCACCTTT
Shewanella sediminis HAW-EB3	Ssed_1908	-162	4	AAAGATGATCTAGTTCATATTG

Position: -300 Score: 4.2 Sequence: ATTATTGATGTATATCAAGAAT Locus tag: Shew185_1916
	Shew185_1916	-300	4.2	ATTATTGATGTATATCAAGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: resA
Ortholog function: C-type cytochrome biogenesis protein ResA (thioredoxin)
Shewanella oneidensis MR-1	SO2100	-265	4.1	ATTATTGATGCATATCAAGAAT
Shewanella putrefaciens CN-32	Sputcn32_2087	-279	4.2	ATTATTGATGTATATCAAGAAT
		-219	3.9	TAACATGACGCAGATCTAATTT
Shewanella sp W3-18-1	Sputw3181_1925	-279	4.2	ATTATTGATGTATATCAAGAAT
		-219	3.9	TAACATGACGCAGATCTAATTT
Shewanella sp ANA-3	Shewana3_1881	-251	4.2	ATTCTTGATGCATATCAAGAAT
		-191	4.2	TAACATGATGCAGATCTAATTT
Shewanella sp MR-4	Shewmr4_1823	-266	4.2	ATTCTTGATGCATATCAAGAAT
		-206	4.2	TAACATGATGCAGATCTAATTT
Shewanella sp MR-7	Shewmr7_2154	-251	4.2	ATTCTTGATGCATATCAAGAAT
		-191	4.2	TAACATGATGCAGATCTAATTT
Shewanella baltica OS155	Sbal_1890	-301	4.3	ATTCTTGATGTATATCAAGAAT
		-241	4	TAACATGACGTAGATCTAATTT
Shewanella woodyi ATCC 51908	Swoo_2219	-140	4.1	ATTTTTGATGCTAATCAAATGA

Position: -74 Score: 4.2 Sequence: TTAAGTGACAATACTCACGTTT Locus tag: Shew185_1921
	Shew185_1921	-74	4.2	TTAAGTGACAATACTCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2105
Ortholog function: Signal transduction histidine kinase for Quinone-reactive Ni/Fe-hydrogenase ## FIG-predicted
Shewanella oneidensis MR-1	SO2105	-265	4.1	ATTATTGATGCATATCAAGAAT
Shewanella putrefaciens CN-32	Sputcn32_2082	-279	4.2	ATTATTGATGTATATCAAGAAT
		-219	3.9	TAACATGACGCAGATCTAATTT
Shewanella sp W3-18-1	Sputw3181_1930	-279	4.2	ATTATTGATGTATATCAAGAAT
		-219	3.9	TAACATGACGCAGATCTAATTT
Shewanella sp ANA-3	Shewana3_1886	-251	4.2	ATTCTTGATGCATATCAAGAAT
		-191	4.2	TAACATGATGCAGATCTAATTT
Shewanella sp MR-4	Shewmr4_1828	-266	4.2	ATTCTTGATGCATATCAAGAAT
		-206	4.2	TAACATGATGCAGATCTAATTT
Shewanella sp MR-7	Shewmr7_2149	-251	4.2	ATTCTTGATGCATATCAAGAAT
		-191	4.2	TAACATGATGCAGATCTAATTT
Shewanella baltica OS155	Sbal_1895	-301	4.3	ATTCTTGATGTATATCAAGAAT
		-241	4	TAACATGACGTAGATCTAATTT

Position: -78 Score: 4 Sequence: ACACGCGATCTAGATCACACTG Locus tag: Shew185_1926
	Shew185_1926	-78	4	ACACGCGATCTAGATCACACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2111
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO2111	-79	4.8	ACACGTGATCTTGATCACACTT
Shewanella putrefaciens CN-32	Sputcn32_1894	-66	4.5	ACACGAGATCTAGATCACATTT
Shewanella sp W3-18-1	Sputw3181_2114	-66	4.5	ACACGAGATCTAGATCACATTT
Shewanella sp ANA-3	Shewana3_1891	-79	3.9	ACCCGCGATCTTGATCACACTT
Shewanella sp MR-4	Shewmr4_1833	-100	3.9	GTCTTTGATCTGAATCAAAAAA
		-79	4.3	ACACGCGATCTTGATCACACTT
Shewanella sp MR-7	Shewmr7_2144	-100	3.9	GTCTTTGATCTGAATCAAAAAA
		-79	4.3	ACACGCGATCTTGATCACACTT
Shewanella baltica OS155	Sbal_1900	-78	4	ACACGCGATCTAGATCACACTG

Position: -247 Score: 4 Sequence: CAGTGTGATCTAGATCGCGTGT Locus tag: Shew185_1927
	Shew185_1927	-247	4	CAGTGTGATCTAGATCGCGTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rplY
Ortholog function: LSU ribosomal protein L25p
Shewanella oneidensis MR-1	SO2112	-95	4.4	AAGTGTGATCAAGATCACGTGT
Shewanella putrefaciens CN-32	Sputcn32_1895	-245	4.4	AAATGTGATCTAGATCTCGTGT
Shewanella sp W3-18-1	Sputw3181_2113	-245	4.4	AAATGTGATCTAGATCTCGTGT
Shewanella sp ANA-3	Shewana3_1892	-234	3.8	TTTTTTGATTCAGATCAAAGCC
Shewanella sp MR-4	Shewmr4_1834	-255	4.1	AAGTGTGATCAAGATCGCGTGT
		-234	4.3	TTTTTTGATTCAGATCAAAGAC
Shewanella sp MR-7	Shewmr7_2143	-255	4.1	AAGTGTGATCAAGATCGCGTGT
		-234	4.3	TTTTTTGATTCAGATCAAAGAC
Shewanella baltica OS155	Sbal_1901	-247	4	CAGTGTGATCTAGATCGCGTGT
Shewanella amazonensis SB2B	Sama_1614	-233	3.9	AAATGTGAACAAGATCACAGGC

Position: -103 Score: 4.6 Sequence: AAATGTGATGTAGCCCAAAAAG Locus tag: Shew185_1944
	Shew185_1944	-103	4.6	AAATGTGATGTAGCCCAAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fumB
Ortholog function: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Shewanella oneidensis MR-1	SO2222	-105	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella putrefaciens CN-32	Sputcn32_1807	-103	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella sp W3-18-1	Sputw3181_2218	-103	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella sp ANA-3	Shewana3_2302	-104	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella sp MR-4	Shewmr4_2124	-104	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella sp MR-7	Shewmr7_2200	-104	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella baltica OS155	Sbal_1918	-103	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella denitrificans OS217	Sden_1912	-131	3.9	AAATGTGATGTAGCCCCAAAAG
Shewanella frigidimarina NCIMB 400	Sfri_2156	-122	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella amazonensis SB2B	Sama_1688	-144	4.2	ACTTGTGATGTAGCCCAAAGAT
Shewanella loihica PV-4	Shew_1904	-111	3.9	AAATGTGATGTTCCCCTAAAAG
		-73	4.8	TATTGTGAACGGATTCAAAAAA
Shewanella pealeana ATCC 700345	Spea_2038	-162	4.3	AAATGTGATGTTTAACTCAAAC
Shewanella halifaxensis HAW-EB4	Shal_2256	-162	4.3	AAATGTGATGTTTAACTCAAAC
Shewanella piezotolerans WP3	swp_2633	-162	4.4	AAATGTGATGTTTAACTCAAAG
Shewanella sediminis HAW-EB3	Ssed_2358	-194	3.8	AAATGTGATATTCCCCTAAAAG

Position: -72 Score: 4.8 Sequence: AATTGTGATCGCAATCAACAAA Locus tag: Shew185_2019
	Shew185_2019	-72	4.8	AATTGTGATCGCAATCAACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE2
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella oneidensis MR-1	SO2536	-72	4.8	AATTGTGATCGCAATCAACAAA
Shewanella putrefaciens CN-32	Sputcn32_1791	-72	4.6	AATTGTGATCGCCATCAATAAA
Shewanella sp W3-18-1	Sputw3181_2234	-72	4.6	AATTGTGATCGCCATCAATAAA
Shewanella sp ANA-3	Shewana3_2323	-72	4.8	AATTGTGATCGCAATCAACAAA
Shewanella sp MR-4	Shewmr4_2146	-72	4.8	AATTGTGATCGCAATCAACAAA
Shewanella sp MR-7	Shewmr7_2223	-72	4.8	AATTGTGATCGCAATCAACAAA
Shewanella baltica OS155	Sbal_2306	-72	4.8	AATTGTGATCGCAATCAACAAA
Shewanella denitrificans OS217	Sden_1764	-66	3.8	ACTTGTGAATAGGATCATCATA
Shewanella frigidimarina NCIMB 400	Sfri_1869	-67	3.8	TCTTGTGAATGAGATCAATAAT
Shewanella amazonensis SB2B	Sama_1870	-64	4.3	ACTTGTGATCAGGATCGCTTAT
Shewanella loihica PV-4	Shew_2108	-71	4.9	AATTGTGATTATGGTCATATAA
Shewanella pealeana ATCC 700345	Spea_2393	-70	4.5	AATTGTGAGATAGAACTCAAAA
Shewanella halifaxensis HAW-EB4	Shal_1890	-70	4.3	AATTGTGAGATAAACCTCAAAA
Shewanella piezotolerans WP3	swp_2312	-97	3.5	AATTGTGACGTAGACCCGCAAA
Shewanella sediminis HAW-EB3	Ssed_1999	-71	4.5	AATTGTGATTATGATCAATAAA
Shewanella woodyi ATCC 51908	Swoo_2604	-73	4.8	AATTGTGATATCGATCAATATA

Position: -193 Score: 4.4 Sequence: TTTGTTGATTGCGATCACAATT Locus tag: Shew185_2020
	Shew185_2020	-193	4.4	TTTGTTGATTGCGATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2535
Ortholog function: Predicted glutamine amidotransferase
Shewanella oneidensis MR-1	SO2535	-194	4.4	TTTGTTGATTGCGATCACAATT
Shewanella putrefaciens CN-32	Sputcn32_1792	-193	4.7	TTTATTGATGGCGATCACAATT
Shewanella sp W3-18-1	Sputw3181_2233	-193	4.7	TTTATTGATGGCGATCACAATT
Shewanella sp ANA-3	Shewana3_2322	-133	4.4	TTTGTTGATTGCGATCACAATT
Shewanella sp MR-4	Shewmr4_2145	-193	4.4	TTTGTTGATTGCGATCACAATT
Shewanella sp MR-7	Shewmr7_2222	-193	4.4	TTTGTTGATTGCGATCACAATT
Shewanella baltica OS155	Sbal_2305	-193	4.4	TTTGTTGATTGCGATCACAATT
Shewanella denitrificans OS217	Sden_1765	-204	3.7	TATGATGATCCTATTCACAAGT
Shewanella frigidimarina NCIMB 400	Sfri_1870	-203	3.9	ATTATTGATCTCATTCACAAGA
Shewanella amazonensis SB2B	Sama_1869	-195	3.9	ATAAGCGATCCTGATCACAAGT
Shewanella loihica PV-4	Shew_2107	-191	4.6	TTATATGACCATAATCACAATT
Shewanella pealeana ATCC 700345	Spea_2392	-196	4.4	TTTTGAGTTCTATCTCACAATT
Shewanella halifaxensis HAW-EB4	Shal_1891	-199	4.2	TTTTGAGGTTTATCTCACAATT
Shewanella sediminis HAW-EB3	Ssed_2000	-191	4.5	TTTATTGATCATAATCACAATT
Shewanella woodyi ATCC 51908	Swoo_2603	-190	4.8	TATATTGATCGATATCACAATT

Position: -196 Score: 4 Sequence: TTTTGTGAGCGACAGCCAATTT Locus tag: Shew185_2057
	Shew185_2057	-196	4	TTTTGTGAGCGACAGCCAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gloA
Ortholog function: lactoylglutathione lyase (EC 4.4.1.5)
Shewanella putrefaciens CN-32	Sputcn32_2101	-120	3.8	TTTTGTGAGCAACAACCAATTT
		-4	3.8	ATTAATGATCTCGTTAACGCAA
Shewanella sp W3-18-1	Sputw3181_1911	-120	3.8	TTTTGTGAGCAACAACCAATTT
		-4	3.8	ATTAATGATCTCGTTAACGCAA
Shewanella sp ANA-3	Shewana3_2232	-205	4	TTTTGTGAGCAAGAGCTAAATA
		-153	4.4	CAAAGTGACGTAGCTCACAAAG
Shewanella sp MR-4	Shewmr4_2107	-205	4	TTTTGTGAGCAAGAGCTAAATA
		-153	4.8	CAAAGTGATACAGCTCACATTA
Shewanella sp MR-7	Shewmr7_1867	-205	4	TTTTGTGAGCAAGAGCTAAATA
		-153	4.8	CAAAGTGATACAGCTCACATTA
Shewanella baltica OS155	Sbal_2269	-196	4	TTTTGTGAGCGACAGCCAATTT
Shewanella baltica OS155	Sbal_4555	-196	4	TTTTGTGAGCGACAGCCAATTT
Shewanella frigidimarina NCIMB 400	Sfri_2179	-101	4.6	AAATGTGAACTAAAGCAAAATT
Shewanella frigidimarina NCIMB 400	Sfri_2098	-213	3.8	AAACGTTAAATCCATTACATTA
		-41	3.7	TTTAATGATGCGATTCAGAGAT
Shewanella amazonensis SB2B	Sama_1837	-96	4.3	AACTGTGAGTTGCTTCAGATTT
Shewanella halifaxensis HAW-EB4	Shal_1924	-95	4	TAAATTGATCTCGCTCAATTTT
Shewanella sediminis HAW-EB3	Ssed_2709	-312	3.8	TTTTGTAATTTTTTAAACAGTA
Shewanella woodyi ATCC 51908	Swoo_2563	-243	3.8	TTTTATGACTCTATTAATATAA

Position: -173 Score: 4.5 Sequence: TTTTTTGATATTGCTCAAGTAT Locus tag: Shew185_2170
	Shew185_2170	-173	4.5	TTTTTTGATATTGCTCAAGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Shewanella oneidensis MR-1	SO2364	-173	4.3	TTTTTTGACATGGCTCAAGTAT
		-125	4.1	AAATGTGAAGGATAACGCATTG
Shewanella putrefaciens CN-32	Sputcn32_1959	-171	4.2	TTTTTTGACATTGCTCAAGTAT
Shewanella sp W3-18-1	Sputw3181_2046	-171	4.2	TTTTTTGACATTGCTCAAGTAT
Shewanella sp ANA-3	Shewana3_2107	-171	4.3	TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-4	Shewmr4_2006	-171	4.3	TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-7	Shewmr7_1969	-171	4.3	TTTTTTGACATGGCTCAAGTAT
Shewanella baltica OS155	Sbal_2201	-173	4.5	TTTTTTGATATTGCTCAAGTAT
Shewanella baltica OS155	Sbal_4487	-173	4.5	TTTTTTGATATTGCTCAAGTAT
Shewanella denitrificans OS217	Sden_1851	-182	4.7	TTTTTTGATGTAGCTCAAGTAT
Shewanella frigidimarina NCIMB 400	Sfri_2010	-186	4.4	TTTTTTGACTTAGCTCAAGTAT
Shewanella amazonensis SB2B	Sama_1791	-180	4.3	TTTTTTGACACAGCTCAAGTAT
Shewanella loihica PV-4	Shew_1985	-178	4.5	TTTTTTGATATTGCTCAAGTAT
Shewanella pealeana ATCC 700345	Spea_2214	-219	4.1	TACCTTGATCTAGATCAACTTA
		-176	4.6	TTTTTTGATATAGCTCAAGTAT
Shewanella halifaxensis HAW-EB4	Shal_2197	-221	4.5	AGATTTGATCTAGATCAACTTT
		-178	4.6	TTTTTTGATATAGCTCAAGTAT
Shewanella piezotolerans WP3	swp_2572	-221	4.3	TAGCTTGATCTAGATCAACTTT
		-178	4.4	TTTTTTGACATAGCTCAAGTAT
Shewanella sediminis HAW-EB3	Ssed_2211	-177	4.4	TTTTTTGACATAGCTCAAGTAT
Shewanella woodyi ATCC 51908	Swoo_2425	-220	4.3	TAGCTTGATCTAGATCAACTTT
		-177	4.4	TTTTTTGACATAGCTCAAGTAT

Position: -318 Score: 5.2 Sequence: AAGCGTGATCTATATCACACTT Locus tag: Shew185_2302
	Shew185_2302	-318	5.2	AAGCGTGATCTATATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2427
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1	SO2427	-319	5.1	AAGTGTGATTAAAATCACACTT
Shewanella putrefaciens CN-32	Sputcn32_1940	-318	5.7	TAGTGTGATCTACATCACATAA
		-274	4	AAATGTTATTTTATTAACAGAG
Shewanella sp W3-18-1	Sputw3181_2068	-318	4.6	GCGTGTGATCTATATCACATAA
Shewanella sp ANA-3	Shewana3_1958	-320	5.2	AAGTGTGACACACATCACATAT
		-276	4.4	AAATGTTATTTTCTTAACAGTT
Shewanella sp MR-4	Shewmr4_1903	-319	5.6	AAATGTGATGTGCGTCACATTT
		-275	3.9	AAATGTTATTTTATTAACAGCT
Shewanella sp MR-7	Shewmr7_2075	-319	5.2	AAGTGTGACGTGTGTCACATTT
		-275	4.3	AAATGTTATTTTATTAACAGTA
Shewanella baltica OS155	Sbal_2044	-317	5.1	AAGCGTGATCTGTGTCACATTT
Shewanella frigidimarina NCIMB 400	Sfri_2416	-149	5	AAATGTGATGTTGTTCACATGT
		-4	4.1	ATTCATGAGTTCAGTCACATTA
Shewanella amazonensis SB2B	Sama_1838	-324	3.8	TTAATCGATATGGGTCACAGAA
		-301	5.2	AAGTGTGATGCACGTCACAAAA
Shewanella loihica PV-4	Shew_2074	-308	5.1	TTTTGTGATAATGGTCACACTT
Shewanella halifaxensis HAW-EB4	Shal_1923	-306	5.5	AATTGTGATGCGCGTCACAATT
		-199	4.1	ACTTGTGCTGTTTGTCACAATG
Shewanella piezotolerans WP3	swp_2362	-310	4.7	AAGCGTGACCTGTGTCACACTT
Shewanella sediminis HAW-EB3	Ssed_2036	-316	4.6	TTTCGTGACGCGCGTCACAGTT
Shewanella woodyi ATCC 51908	Swoo_2565	-321	4.9	TTCTGTGACCTGTGTCACAAAA

Position: -2 Score: 4.2 Sequence: TTATGTTATTAATGCCACAAAA Locus tag: Shew185_2431
	Shew185_2431	-2	4.2	TTATGTTATTAATGCCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycbW
Ortholog function: probable membrane protein YcbW
Shewanella oneidensis MR-1	SO2591	-63	3.8	TATTTTGATATTGAATAAAATA
		-34	3.8	TGATGTGCCAGTGTTCAAATAG
		-2	3.7	TTATGTTATTATTGCCGCAAAA
Shewanella putrefaciens CN-32	Sputcn32_2193	-63	3.8	TATTTTGATATTGAATAAAATA
		-34	4	TTATGTGCGAGTGTTCAAATAG
		-2	3.8	TTATGTTATTAATGCCGCAAAA
Shewanella sp W3-18-1	Sputw3181_1816	-63	3.8	TATTTTGATATTGAATAAAATA
		-34	3.7	TGATGTGCGAGTGTTCAAATAG
		-2	3.8	TTATGTTATTAATGCCGCAAAA
Shewanella sp ANA-3	Shewana3_1787	-63	3.8	TATTTTGATATTGAATAAAATA
		-34	3.7	TGATGTGCGAGTGTTCAAATAG
		-2	4	TTATGTTATTATTGCCACAAAA
Shewanella sp MR-4	Shewmr4_1682	-63	3.8	TATTTTGATATTGAATAAAATA
		-34	3.8	TGATGTGCCAGTGTTCAAATAG
		-2	4	TTATGTTATTATTGCCACAAAA
Shewanella sp MR-7	Shewmr7_1757	-63	3.8	TATTTTGATATTGAATAAAATA
		-34	3.7	TGATGTGCGAGTGTTCAAATAG
		-2	4	TTATGTTATTATTGCCACAAAA
Shewanella baltica OS155	Sbal_2438	-2	4.2	TTATGTTATTAATGCCACAAAA
Shewanella denitrificans OS217	Sden_1731	-139	4.2	ATTTATGAGTGCGATCAAAATT
Shewanella amazonensis SB2B	Sama_1594	-2	3.9	TTATGTTATTAATGCCACATAC
Shewanella loihica PV-4	Shew_1811	-94	4.6	TGTTGTAATCTATATCATATTT
Shewanella pealeana ATCC 700345	Spea_1944	-62	4.1	TATTTTGATATTGATGAAATTA
Shewanella halifaxensis HAW-EB4	Shal_2355	-62	4.1	TATTTTGATATTGATGAAATAA
Shewanella piezotolerans WP3	swp_2809	-239	3.8	TTTAATAATATAGATCATAAAA
		-143	4.1	TATTTTGATATTGATGAAATTA
		-2	4	ATATGGAATTTCTATCACCTTT
Shewanella sediminis HAW-EB3	Ssed_2474	-94	4.6	TATTGTTATTCAACTCATATTT
Shewanella woodyi ATCC 51908	Swoo_2142	-52	4	TACTTTGATATTGAACAAAATA

Position: -212 Score: 3.9 Sequence: AAATGTGATCTGTGCCTAAATG Locus tag: Shew185_2468
	Shew185_2468	-212	3.9	AAATGTGATCTGTGCCTAAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Shewanella oneidensis MR-1	SO2629	-199	4.1	AAATGTGATCTACACCTAAATG
Shewanella putrefaciens CN-32	Sputcn32_2230	-212	3.9	AAATGTGATCTGTGCCTAAATG
Shewanella sp W3-18-1	Sputw3181_1779	-212	3.9	AAATGTGATCTGTGCCTAAATG
Shewanella sp ANA-3	Shewana3_1750	-209	3.9	AAATGTGATCTACGCCTAAATG
Shewanella sp MR-4	Shewmr4_1606	-208	3.9	AAATGTGATCTACGCCTAAATG
Shewanella sp MR-7	Shewmr7_1681	-208	3.9	AAATGTGATCTACGCCTAAATG
Shewanella baltica OS155	Sbal_2475	-212	3.9	AAATGTGATCTGTGCCTAAATG
Shewanella frigidimarina NCIMB 400	Sfri_2257	-242	4.6	AATTGTGATCTGTACCTAATTT
Shewanella loihica PV-4	Shew_1563	-237	3.8	ATTTATGATGTCGGCCAACTAA
		-217	4.1	AAATGTGATCGATAGCAAAACG
Shewanella pealeana ATCC 700345	Spea_2535	-195	4.2	AAGTGTGATCTGCAGCTAACTA
Shewanella piezotolerans WP3	swp_1868	-21	4.2	AAGTGTGATCCGCAACTAAATT
Shewanella sediminis HAW-EB3	Ssed_1883	-275	3.9	AAGTGTGATCTGCGCCAAGTTG
Shewanella woodyi ATCC 51908	Swoo_2702	-304	3.9	AAGTGTGATCTAAGCCAAGTTG

Position: -66 Score: 3.8 Sequence: TGCCGTGATTCACATCCCAGTT Locus tag: Shew185_2512
	Shew185_2512	-66	3.8	TGCCGTGATTCACATCCCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Shewanella putrefaciens CN-32	Sputcn32_2273	-66	3.8	TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1	Sputw3181_1735	-66	3.8	TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155	Sbal_2519	-66	3.8	TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217	Sden_2187	-274	3.7	TGGATTGATGCAAATTACAAAA
		-186	3.8	AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400	Sfri_2347	-74	4.1	ACGTGTGATGTAACTTACGTTA
		-19	3.7	AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B	Sama_1423	-80	3.7	TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345	Spea_1784	-86	4.4	AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4	Shal_2493	-86	4.9	ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3	swp_2955	-20	4.6	AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3	Ssed_2818	-86	4.2	GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908	Swoo_1833	-87	4.8	ATTTGTGATCTAAATCACGCCT

Position: -143 Score: 3.9 Sequence: ATGCTTGAGGTAACTCACAAAG Locus tag: Shew185_2533
	Shew185_2533	-143	3.9	ATGCTTGAGGTAACTCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1415
Ortholog function: transcriptional regulator, TetR family
Shewanella oneidensis MR-1	SO1415	-135	3.8	GTATTTGAAGTAACTCACAAAG
		-94	4	AGGTGTGACCTTTATCCCGATT
Shewanella sp MR-4	Shewmr4_0298	-241	3.8	ATTCGTGAGTTATCTCGTGAAT
		-94	4	TGATGTGAGCTTAATCCCGATT
Shewanella loihica PV-4	Shew_0277	-137	4.4	TTGTTTGACGTAATTCACAAAG
Shewanella pealeana ATCC 700345	Spea_0326	-247	4.1	ATTCGTGAGTCAGCTCTCGAAT
		-138	4.5	TTATATGACGTAATTCACAAAG
Shewanella halifaxensis HAW-EB4	Shal_3965	-247	4.2	ATTCGTGAGGCAGCTCTCGAAT
		-138	4.3	TTGTATGACGTAACTCACAAAG
Shewanella sediminis HAW-EB3	Ssed_4183	-259	3.9	ATTCGTGAAGCAGATCTCGAAG
		-136	4.1	TTACATGAGGTAACTCACAAAG

Position: -267 Score: 3.9 Sequence: AATCGGGATAAAGCTCACGCAA Position: -225 Score: 4 Sequence: CTTTGTGAGTTACCTCAAGCAT Position: -76 Score: 4.2 Sequence: AGCCGTGACTTAGTTCACCTTT Locus tag: Shew185_2534
	Shew185_2534	-267	3.9	AATCGGGATAAAGCTCACGCAA
		-225	4	CTTTGTGAGTTACCTCAAGCAT
		-76	4.2	AGCCGTGACTTAGTTCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1414
Ortholog function: flavocytochrome c flavin subunit
Shewanella oneidensis MR-1	SO1414	-220	4.3	CTTTGTGAGTTACTTCAAATAC
Shewanella sp MR-4	Shewmr4_0299	-263	4	AATCGGGATTAAGCTCACATCA
Shewanella loihica PV-4	Shew_0276	-216	4.2	CTTTGTGAATTACGTCAAACAA
Shewanella pealeana ATCC 700345	Spea_0325	-228	4.3	CTTTGTGAATTACGTCATATAA
		-181	4.1	CAGATTGATTCCTTTCACATTT
		-78	4.4	TGGCGTGACTTAGTTCACCTTT
Shewanella halifaxensis HAW-EB4	Shal_3966	-269	4	AATCGGGATTCACTTCACGCTA
		-228	4.2	CTTTGTGAGTTACGTCATACAA
		-78	4.4	TGGCGTGACTTAGTTCACCTTT
Shewanella sediminis HAW-EB3	Ssed_4184	-280	3.8	AATCGGGATTAGCTTCACGCAA
		-239	4.1	CTTTGTGAGTTACCTCATGTAA
		-116	4	CTTCGAGATCTGCTTCACGAAT

Position: -111 Score: 4.8 Sequence: TGACGTGATCCATTTCACCTTT Locus tag: Shew185_2538
	Shew185_2538	-111	4.8	TGACGTGATCCATTTCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1410
Ortholog function: conserved domain protein
Shewanella oneidensis MR-1	SO1410	-122	4.5	TGGCGTGATCCAATTCACCTTT
		-82	4.1	TATTGTTAGTCACGTAACAAAA
Shewanella sp MR-4	Shewmr4_0303	-108	4.4	TGCCGTGATCCAATTCACCTTT
		-68	4.1	TATTGTTAGTCACGTAACAATA
Shewanella loihica PV-4	Shew_0272	-151	3.9	ATTCGCGAGCCAAGTCACGAAT
		-110	4.6	TGGCGTGATCCATTTCACCTTT
Shewanella pealeana ATCC 700345	Spea_0321	-157	4.1	ATTCGCGACCGAGCTCACGAAT
		-116	4.1	CTGCGTGATCCATTTCAACTTT
Shewanella halifaxensis HAW-EB4	Shal_3970	-156	4.1	ATTCGCGACTTGGCTCACGAAT
		-115	4.1	CTGCGTGATCCAATTCAACTTT
Shewanella sediminis HAW-EB3	Ssed_4188	-154	3.9	ATTCGCGAGCTCTGTCACGAAT
		-113	4.2	GTGCGTGATCCAATTCACCTTT

Position: -65 Score: 4.8 Sequence: TTTTGTGATCTCAATCACTGTA Locus tag: Shew185_2618
	Shew185_2618	-65	4.8	TTTTGTGATCTCAATCACTGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2010
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO2010	-70	4.7	TTTTGTGATCTTCGTCACTGTA
Shewanella putrefaciens CN-32	Sputcn32_2305	-65	5.1	TTTTGTGATCTCCATCACCGTT
Shewanella sp W3-18-1	Sputw3181_1703	-65	5.1	TTTTGTGATCTCCATCACCGTT
Shewanella sp MR-4	Shewmr4_2257	-65	4.9	TTTTGTGATCTTAATCACTGTA
Shewanella sp MR-7	Shewmr7_2329	-65	4.9	TTTTGTGATCTTAATCACTGTA
Shewanella baltica OS155	Sbal_2577	-65	5	TTTTGTGATCTAAATCACTGTA
Shewanella denitrificans OS217	Sden_2384	-81	4.8	AAATGTGATCCAGCTCAGCTTT
Shewanella frigidimarina NCIMB 400	Sfri_2410	-116	4.8	TTTTGTGATCGACTTCACGTCT
Shewanella amazonensis SB2B	Sama_1307	-51	4.3	TTTTGTGAGCTGCATCACGGCA
Shewanella loihica PV-4	Shew_2238	-48	4.1	AAAATTGATCTAGATCAATAAA
Shewanella pealeana ATCC 700345	Spea_1505	-51	4.1	AAAATTGATCTAGATCAATAAA
Shewanella halifaxensis HAW-EB4	Shal_1587	-80	4	TAGTGTGATTGATATCTATAAT
Shewanella piezotolerans WP3	swp_1711	-21	4.1	AAAATTGATCTAGATCAATAAA
Shewanella sediminis HAW-EB3	Ssed_2855	-49	4.1	AAAATTGATCTAGATCAATAAA
Shewanella woodyi ATCC 51908	Swoo_1790	-48	4.1	TAAATTGATCTAGATCAATAAA

Position: -148 Score: 4.7 Sequence: TAGTGTGATCTTGTTATCAATT Locus tag: Shew185_2652
	Shew185_2652	-148	4.7	TAGTGTGATCTTGTTATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgR
Ortholog function: Tyrosine degradation transcriptional regulator, LysR family
Shewanella oneidensis MR-1	SO1965	-148	4.4	TACTGTGATCTTCTTATCAATT
Shewanella putrefaciens CN-32	Sputcn32_1672	-148	4.8	TTATGTGATCTTGTTATCAATT
Shewanella sp W3-18-1	Sputw3181_2353	-148	4.8	TTATGTGATCTTGTTATCAATT
Shewanella sp ANA-3	Shewana3_2480	-148	4.6	TAGTGTGATCTTCTTATCAATT
		-92	3.9	ATCTGTTATCTCAATCTAAAAA
Shewanella sp MR-4	Shewmr4_2290	-148	4.6	TAGTGTGATCTTCTTATCAATT
		-92	3.9	ATCTGTTATCTCAATCTAAAAA
Shewanella sp MR-7	Shewmr7_2362	-148	4.6	TAGTGTGATCTTCTTATCAATT
		-92	3.9	ATCTGTTATCTCTATCTAAAAA
Shewanella baltica OS155	Sbal_2614	-148	4.7	TAGTGTGATCTTGTTATCAATT
Shewanella denitrificans OS217	Sden_2161	-146	4.3	CGTTGTGATCTAGCTATCAATT
Shewanella frigidimarina NCIMB 400	Sfri_2325	-135	5.1	ATATGTGATCTAACTTACAATT
Shewanella amazonensis SB2B	Sama_1570	-135	4.7	ATATGTGATCTGGGTATCAATT
Shewanella loihica PV-4	Shew_2153	-115	5.1	TTATGTGATCTAAGTAACAATT
Shewanella pealeana ATCC 700345	Spea_1875	-114	4.3	TAATGTGATCTAGGTTCAATTT
Shewanella halifaxensis HAW-EB4	Shal_2408	-114	4.5	TAATGTGATCTAGCTTTAATTT
Shewanella piezotolerans WP3	swp_2869	-115	4.9	TAATGTGATCTTGTTATCAATT
Shewanella sediminis HAW-EB3	Ssed_2686	-116	4.5	ATTTGTGACATACCTATCAATT
Shewanella woodyi ATCC 51908	Swoo_1933	-116	4.5	ATGTGTGATCTAAGTATCAATT

Position: -144 Score: 3.5 Sequence: TTTTTAGATTGAGATAACGGAT Position: -88 Score: 4 Sequence: AATTGATAACAAGATCACACTA Locus tag: Shew185_2653
	Shew185_2653	-144	3.5	TTTTTAGATTGAGATAACGGAT
		-88	4	AATTGATAACAAGATCACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgA
Ortholog function: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Shewanella oneidensis MR-1	SO1963	-92	3.8	AATTGATAAGAAGATCACAGTA
Shewanella putrefaciens CN-32	Sputcn32_1671	-66	4.1	AATTGATAACAAGATCACATAA
Shewanella sp W3-18-1	Sputw3181_2354	-66	4.1	AATTGATAACAAGATCACATAA
Shewanella sp ANA-3	Shewana3_2481	-144	3.9	TTTTTAGATTGAGATAACAGAT
		-88	3.9	AATTGATAAGAAGATCACACTA
Shewanella sp MR-4	Shewmr4_2291	-144	3.9	TTTTTAGATTGAGATAACAGAT
		-88	3.9	AATTGATAAGAAGATCACACTA
Shewanella sp MR-7	Shewmr7_2363	-144	3.9	TTTTTAGATAGAGATAACAGAT
		-88	3.9	AATTGATAAGAAGATCACACTA
Shewanella baltica OS155	Sbal_2615	-144	3.5	TTTTTAGATTGAGATAACGGAT
		-88	4	AATTGATAACAAGATCACACTA
Shewanella denitrificans OS217	Sden_2162	-122	3.6	AATTGATAGCTAGATCACAACG
Shewanella frigidimarina NCIMB 400	Sfri_2326	-126	3.5	TTTGTTGATCTTTACCACTAAA
		-106	5	AATTGTAAGTTAGATCACATAT
Shewanella amazonensis SB2B	Sama_1569	-78	4.5	AATTGATACCCAGATCACATAT
Shewanella loihica PV-4	Shew_2154	-61	5.1	AATTGTTACTTAGATCACATAA
Shewanella pealeana ATCC 700345	Spea_1874	-63	4	AAATTGAACCTAGATCACATTA
Shewanella halifaxensis HAW-EB4	Shal_2409	-63	3.9	AAATTAAAGCTAGATCACATTA
Shewanella piezotolerans WP3	swp_2870	-84	3.5	TTTTTTGCTGTTGTTAGCAACT
		-61	4.1	AATTGATAACAAGATCACATTA

Position: -75 Score: 4.2 Sequence: AGTCGTGATTGTGCTCACACCA Locus tag: Shew185_2674
	Shew185_2674	-75	4.2	AGTCGTGATTGTGCTCACACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2858
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO2858	-105	4.8	TATTGTGAGTAAGTTCGCAAAT
Shewanella putrefaciens CN-32	Sputcn32_2359	-75	4.2	AGTCGTGATTGTGCTCACACCA
Shewanella sp W3-18-1	Sputw3181_1650	-75	4.2	AGTCGTGATTGTGCTCACACCA
Shewanella sp ANA-3	Shewana3_1574	-105	4	GGATGTGAGCCGCTTCGCAAAT
Shewanella sp MR-4	Shewmr4_1513	-105	3.9	CCGTGTGAGGTATTTCGCAAAT
Shewanella sp MR-7	Shewmr7_1580	-105	3.9	CCGTGTGAGGTATTTCGCAAAT
Shewanella baltica OS155	Sbal_2639	-75	4.2	AGTCGTGATTGTGCTCACACCA
Shewanella frigidimarina NCIMB 400	Sfri_1546	-237	4.9	TTTTGTGATGCAGATCTCAATC

Position: -136 Score: 3.9 Sequence: AAGTTAGAATCAGATCACACTT Locus tag: Shew185_2781
	Shew185_2781	-136	3.9	AAGTTAGAATCAGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Shewanella oneidensis MR-1	SO3089	-131	3.9	AAGTTAGAATCAGATCACACTT
Shewanella putrefaciens CN-32	Sputcn32_2460	-136	3.9	AAGTTAGAATCAGATCACACTT
Shewanella sp W3-18-1	Sputw3181_1548	-136	3.9	AAGTTAGAATCAGATCACACTT
Shewanella sp ANA-3	Shewana3_1460	-135	3.9	AAGTTAGAATCAGATCACACTT
Shewanella sp MR-4	Shewmr4_1407	-135	3.9	AAGTTAGAATCAGATCACACTT
Shewanella sp MR-7	Shewmr7_1472	-135	3.9	AAGTTAGAATCAGATCACACTT
Shewanella baltica OS155	Sbal_2761	-136	3.9	AAGTTAGAATCAGATCACACTT
Shewanella denitrificans OS217	Sden_1529	-109	3.9	AAGTTAGAATCAGATCACACTT
Shewanella frigidimarina NCIMB 400	Sfri_2677	-104	3.9	AAGTTAGAATCAGATCACACTT
Shewanella amazonensis SB2B	Sama_2168	-112	3.6	AAGTTAGAATCGGGTCACACTT
Shewanella loihica PV-4	Shew_2426	-134	3.9	AAGTTAGAATCAGATCACACTT
Shewanella pealeana ATCC 700345	Spea_2599	-116	3.9	AAGTTAGAATCAGATCACACTT
Shewanella halifaxensis HAW-EB4	Shal_2671	-119	3.9	AAGTTAGAATCAGATCACACTT
Shewanella piezotolerans WP3	swp_3140	-122	3.9	AAGTTAGAATCAGATCACACTT
Shewanella sediminis HAW-EB3	Ssed_1628	-151	3.9	AAGTTAGAATCAGATCACACTT
Shewanella woodyi ATCC 51908	Swoo_3027	-138	4.1	AAGTTAGAATCAGATCACATTT

Position: -148 Score: 4.6 Sequence: AAGTGTGATCTGATTCTAACTT Locus tag: Shew185_2782
	Shew185_2782	-148	4.6	AAGTGTGATCTGATTCTAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3090
Ortholog function: MoxR-like ATPase in aerotolerance operon
Shewanella oneidensis MR-1	SO3090	-165	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella putrefaciens CN-32	Sputcn32_2461	-97	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella sp W3-18-1	Sputw3181_1547	-97	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella sp ANA-3	Shewana3_1459	-160	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella sp MR-4	Shewmr4_1406	-160	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella sp MR-7	Shewmr7_1471	-160	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella baltica OS155	Sbal_2762	-148	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella denitrificans OS217	Sden_1528	-157	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella frigidimarina NCIMB 400	Sfri_2678	-167	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella amazonensis SB2B	Sama_2169	-137	4.2	AAGTGTGACCCGATTCTAACTT
Shewanella loihica PV-4	Shew_2427	-296	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella pealeana ATCC 700345	Spea_2600	-306	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella halifaxensis HAW-EB4	Shal_2672	-319	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella piezotolerans WP3	swp_3141	-97	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella sediminis HAW-EB3	Ssed_1627	-316	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella woodyi ATCC 51908	Swoo_3028	-306	4.8	AAATGTGATCTGATTCTAACTT

Position: -102 Score: 3.8 Sequence: AGGTTAGATTTTAATCACACTT Position: 11 Score: 3.7 Sequence: AACCCCGATTTTAATCACATTT Locus tag: Shew185_2790
	Shew185_2790	-102	3.8	AGGTTAGATTTTAATCACACTT
		11	3.7	AACCCCGATTTTAATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
Shewanella putrefaciens CN-32	Sputcn32_2469	-60	4.2	AGGTTAGATTTTGATCACATTT
		-30	3.8	TAATGGGTTCTTGCTCAAACAT
Shewanella sp W3-18-1	Sputw3181_1539	-60	4.4	ATGTTAGATTTTGATCACATTT
		-30	3.8	TAATGGGTTCTTGCTCAAACAT
Shewanella sp ANA-3	Shewana3_1451	-73	3.8	TAATGGGTTCTTGCTCAAACAT
Shewanella sp MR-4	Shewmr4_1398	-73	3.8	TAATGGGTTCTTGCTCAAACAT
Shewanella sp MR-7	Shewmr7_1463	-73	3.8	TAATGGGTTCTTGCTCAAACAT
Shewanella baltica OS155	Sbal_2770	-102	3.8	AGGTTAGATTTTAATCACACTT
Shewanella frigidimarina NCIMB 400	Sfri_2686	-64	4.5	AAGTGTGAACTAGATCGAACTT
Shewanella amazonensis SB2B	Sama_2177	-77	3.8	AATTGGGATCCGACCCAAACTT
Shewanella pealeana ATCC 700345	Spea_2608	-104	3.8	TGGTTAGATCTTCATCACATTC
Shewanella halifaxensis HAW-EB4	Shal_2680	-74	3.7	ATTTGAGCCTTGGCTCATAAAT
Shewanella piezotolerans WP3	swp_3151	-72	3.7	ATTATTGAGCTATAGCTCAAAT
		-70	4.3	TATTGAGCTATAGCTCAAATAT
Shewanella sediminis HAW-EB3	Ssed_1619	-72	3.9	TATTGAGCTTCCTATCAAACAT
Shewanella woodyi ATCC 51908	Swoo_3036	-86	4.4	GTATATGACCCAGTTCACATTT

Position: -296 Score: 3.8 Sequence: ATTTGTACGGTAATTCACTTAT Position: -171 Score: 4.5 Sequence: AATAGTGATAAAGATCGCGTTT Locus tag: Shew185_2812
	Shew185_2812	-296	3.8	ATTTGTACGGTAATTCACTTAT
		-171	4.5	AATAGTGATAAAGATCGCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3119
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO3119	-166	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella putrefaciens CN-32	Sputcn32_2489	-171	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella sp W3-18-1	Sputw3181_1519	-171	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella sp ANA-3	Shewana3_1429	-171	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella sp MR-4	Shewmr4_1376	-171	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella sp MR-7	Shewmr7_1441	-171	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella baltica OS155	Sbal_2792	-171	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella amazonensis SB2B	Sama_2198	-151	4.4	AATAGTGATTAAGCTCGCGTTT
Shewanella pealeana ATCC 700345	Spea_1466	-148	4.1	GAAAGTGATTTATATCGCGTTT
Shewanella halifaxensis HAW-EB4	Shal_1549	-148	4.1	GAAAGTGATTTATATCGCGTTT
Shewanella piezotolerans WP3	swp_1671	-220	3.8	GAAAGTGACTTAAATCGCGTTT
Shewanella sediminis HAW-EB3	Ssed_2897	-173	4.7	TAAAGTGATTTAGATCGCGTTT
Shewanella woodyi ATCC 51908	Swoo_1750	-148	4.4	TTAAGTGACTTAGATCGCGTTT

Position: -202 Score: 4.3 Sequence: AAACGCGATCTTTATCACTATT Position: -77 Score: 3.7 Sequence: ATAAGTGAATTACCGTACAAAT Locus tag: Shew185_2813
	Shew185_2813	-202	4.3	AAACGCGATCTTTATCACTATT
		-77	3.7	ATAAGTGAATTACCGTACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3120
Ortholog function: oxidoreductase, Gfo/Idh/MocA family
Shewanella oneidensis MR-1	SO3120	-186	4.3	AAACGCGATCTTTATCACTATT
Shewanella putrefaciens CN-32	Sputcn32_2490	-173	4.3	AAACGCGATCTTTATCACTATT
Shewanella sp W3-18-1	Sputw3181_1518	-173	4.3	AAACGCGATCTTTATCACTATT
Shewanella sp ANA-3	Shewana3_1428	-187	4.3	AAACGCGATCTTTATCACTATT
Shewanella sp MR-4	Shewmr4_1375	-186	4.3	AAACGCGATCTTTATCACTATT
Shewanella sp MR-7	Shewmr7_1440	-186	4.3	AAACGCGATCTTTATCACTATT
Shewanella baltica OS155	Sbal_2793	-202	4.3	AAACGCGATCTTTATCACTATT
Shewanella pealeana ATCC 700345	Spea_1465	-158	4	AAACGCGATATAAATCACTTTC
Shewanella halifaxensis HAW-EB4	Shal_1548	-207	4	AAACGCGATATAAATCACTTTC
Shewanella piezotolerans WP3	swp_1670	-185	3.7	AAACGCGATTTAAGTCACTTTC
Shewanella woodyi ATCC 51908	Swoo_1749	-214	4.2	AAACGCGATCTAAGTCACTTAA

Position: -207 Score: 4.4 Sequence: TAGTGTGACTCGCGTCTCAATA Locus tag: Shew185_2993
	Shew185_2993	-207	4.4	TAGTGTGACTCGCGTCTCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: cytochrome d ubiquinol oxidase, subunit I, CydA
Shewanella oneidensis MR-1	SO3286	-203	4.2	TAGTGTGACTAGGGTCTCAGTA
Shewanella putrefaciens CN-32	Sputcn32_2641	-204	4.3	TAGTGTGACGCTTGTCCCAATA
Shewanella sp W3-18-1	Sputw3181_1366	-204	4.3	TAGTGTGACGCTTGTCCCAATA
Shewanella sp ANA-3	Shewana3_1241	-203	4.2	TAGTGTGACTAGGGTCTCAGTA
Shewanella sp MR-4	Shewmr4_1239	-203	4.2	TAGTGTGACTAGGGTCTCAGTA
Shewanella sp MR-7	Shewmr7_1310	-203	4.2	TAGTGTGACTAGGGTCTCAGTA
Shewanella baltica OS155	Sbal_2979	-207	4.4	TAGTGTGACTCGCGTCTCAATA
Shewanella denitrificans OS217	Sden_1274	-157	4.1	TAAATTGATCTAAATCAATTTA
Shewanella frigidimarina NCIMB 400	Sfri_1142	-240	4.2	AAATCTAATGCTGGTCACATAA
Shewanella loihica PV-4	Shew_1302	-206	4.7	TTTTGTGAGCCGCCTCTCAAAA
Shewanella pealeana ATCC 700345	Spea_1318	-235	4	ATTCGGGATGGGTGTCACAAAG
Shewanella halifaxensis HAW-EB4	Shal_1381	-234	4.1	ATTTGGGATGAGTATCACGGAA
Shewanella piezotolerans WP3	swp_1469	-231	4.2	AGGTGAGACGGTGATCACAATA
Shewanella sediminis HAW-EB3	Ssed_3118	-203	4	TAGTGTGAAGTTCGTCGTAAAA
Shewanella woodyi ATCC 51908	Swoo_1565	-204	3.8	TTTTGTGAGATCGGTCGGAAAG

Position: -182 Score: 3.8 Sequence: ATTTGTGTGATTCTTAGCATAA Position: -180 Score: 4.4 Sequence: TTGTGTGATTCTTAGCATAAAA Locus tag: Shew185_3094
	Shew185_3094	-182	3.8	ATTTGTGTGATTCTTAGCATAA
		-180	4.4	TTGTGTGATTCTTAGCATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1389
Ortholog function: ROK family protein, in a cluster with chitinase
Shewanella oneidensis MR-1	SO1389	-150	3.8	AACTGTTAGCTTTATCACTCAA
Shewanella sp ANA-3	Shewana3_2985	-150	4.2	AAATGTTATCTTTATCACTCAG
Shewanella sp MR-4	Shewmr4_2806	-150	4.2	AAATGTTATCTTTATCACTCAG
Shewanella sp MR-7	Shewmr7_2889	-150	4.5	AAATGTTATCTTTATCACTCAA
Shewanella baltica OS155	Sbal_3084	-180	4.4	TTGTGTGATTCTTAGCATAAAA

Position: -234 Score: 4.2 Sequence: TTTTATGCTAAGAATCACACAA Locus tag: Shew185_3095
	Shew185_3095	-234	4.2	TTTTATGCTAAGAATCACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1388
Ortholog function: Xaa-Pro aminopeptidase (EC 3.4.11.9)
Shewanella oneidensis MR-1	SO1388	-232	4.1	TTGAGTGATAAAGCTAACAGTT
Shewanella sp ANA-3	Shewana3_2986	-233	4.2	CTGAGTGATAAAGATAACATTT
Shewanella sp MR-4	Shewmr4_2807	-233	4.2	CTGAGTGATAAAGATAACATTT
Shewanella sp MR-7	Shewmr7_2890	-233	4.5	TTGAGTGATAAAGATAACATTT
Shewanella baltica OS155	Sbal_3085	-234	4.2	TTTTATGCTAAGAATCACACAA
Shewanella denitrificans OS217	Sden_0887	-161	3.7	TATTGTATACAATATCACGTTA

Position: -154 Score: 4.2 Sequence: AATAATGATTTAATTCAAACTA Locus tag: Shew185_3108
	Shew185_3108	-154	4.2	AATAATGATTTAATTCAAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sbal_3098
Ortholog function: 83 kDa decaheme outer membrane cytochrome c
Shewanella putrefaciens CN-32	Sputcn32_1187	-260	4.4	ATTTTTAACCTGCGTCACATTT
Shewanella sp W3-18-1	Sputw3181_2977	-260	4.4	ATTTTTAACCTGCGTCACATTT
Shewanella baltica OS155	Sbal_3098	-154	4.2	AATAATGATTTAATTCAAACTA

Position: -159 Score: 3.8 Sequence: AATAGTGATCTTTCTCAGCATC Locus tag: Shew185_3198
	Shew185_3198	-159	3.8	AATAGTGATCTTTCTCAGCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1247
Ortholog function: hypothetical protein
Shewanella sp MR-4	Shewmr4_1059	-273	4.3	CAATGTGAGCTAGTTAACATCA
Shewanella sp MR-7	Shewmr7_1131	-273	4.3	CAATGTGAGCTAGTTAACATCA
Shewanella baltica OS155	Sbal_3204	-159	3.8	AATAGTGATCTTTCTCAGCATC
Shewanella amazonensis SB2B	Sama_0996	-108	3.8	TCATGTGAGCCAGGTTAAAAAA
Shewanella pealeana ATCC 700345	Spea_3022	-187	4.1	TTTAGTGATGTTTTTTAGATTA
Shewanella woodyi ATCC 51908	Swoo_3518	-312	4.8	TTTTGTGAATTGTATCACTTAT

Position: 14 Score: 3.8 Sequence: TATTATGATGTTGGACTCCTTT Locus tag: Shew185_3228
	Shew185_3228	14	3.8	TATTATGATGTTGGACTCCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoB
Ortholog function: phosphopentomutase (EC 5.4.2.7)
Shewanella oneidensis MR-1	SO1219	-135	3.9	AAGTGTGACCTAAATCTAGTTG
Shewanella putrefaciens CN-32	Sputcn32_2820	-136	3.7	AAGTGTGACCTAAATCTATTTG
Shewanella sp W3-18-1	Sputw3181_1191	-136	3.7	AAGTGTGACCTAAATCTATTTG
Shewanella sp ANA-3	Shewana3_1043	-135	3.9	AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-4	Shewmr4_1039	-135	3.9	AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-7	Shewmr7_1104	-135	3.9	AAGTGTGACCTAAATCTAGTTG
Shewanella baltica OS155	Sbal_3225	-136	3.7	AAGTGTGACCTAAATCTATTTG
Shewanella amazonensis SB2B	Sama_0975	-135	3.9	ATTTGTGATCCGCGTCGAAACG
Shewanella loihica PV-4	Shew_2813	-133	4	AAGTGTGATCTAAATCTATTTG
Shewanella pealeana ATCC 700345	Spea_3046	-138	4.8	AAGTGTGATCTAAATCTAATTA
Shewanella halifaxensis HAW-EB4	Shal_3134	-138	4.8	AAGTGTGATCTAAATCTAATTA
Shewanella piezotolerans WP3	swp_1231	-139	4.8	AAGTGTGATCTAAATCTAATTA
Shewanella sediminis HAW-EB3	Ssed_3376	-134	4	AAGTGTGATCTAAATCTATTTG
Shewanella woodyi ATCC 51908	Swoo_3547	-157	4.2	AAGTGTGATCTAAATCTAGTTG

Position: -136 Score: 3.7 Sequence: AAGTGTGACCTAAATCTATTTG Locus tag: Shew185_3229
	Shew185_3229	-136	3.7	AAGTGTGACCTAAATCTATTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoA
Ortholog function: thymidine phosphorylase (EC 2.4.2.4)
Shewanella oneidensis MR-1	SO1218	-135	3.9	AAGTGTGACCTAAATCTAGTTG
Shewanella putrefaciens CN-32	Sputcn32_2821	-136	3.7	AAGTGTGACCTAAATCTATTTG
Shewanella sp W3-18-1	Sputw3181_1190	-136	3.7	AAGTGTGACCTAAATCTATTTG
Shewanella sp ANA-3	Shewana3_1042	-135	3.9	AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-4	Shewmr4_1038	-135	3.9	AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-7	Shewmr7_1103	-135	3.9	AAGTGTGACCTAAATCTAGTTG
Shewanella baltica OS155	Sbal_3226	-136	3.7	AAGTGTGACCTAAATCTATTTG
Shewanella amazonensis SB2B	Sama_0974	-135	3.9	ATTTGTGATCCGCGTCGAAACG
Shewanella loihica PV-4	Shew_2814	-133	4	AAGTGTGATCTAAATCTATTTG
Shewanella pealeana ATCC 700345	Spea_3047	-138	4.8	AAGTGTGATCTAAATCTAATTA
Shewanella halifaxensis HAW-EB4	Shal_3135	-138	4.8	AAGTGTGATCTAAATCTAATTA
Shewanella piezotolerans WP3	swp_1230	-139	4.8	AAGTGTGATCTAAATCTAATTA
Shewanella sediminis HAW-EB3	Ssed_3377	-134	4	AAGTGTGATCTAAATCTATTTG
Shewanella woodyi ATCC 51908	Swoo_3548	-157	4.2	AAGTGTGATCTAAATCTAGTTG

Position: -145 Score: 4.2 Sequence: AGTCGCGACTTTGTTCACAATT Locus tag: Shew185_3231
	Shew185_3231	-145	4.2	AGTCGCGACTTTGTTCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tsx
Ortholog function: nucleoside-specific channel-forming protein, Tsx
Shewanella putrefaciens CN-32	Sputcn32_2823	-268	3.8	AATAGTGATTTCTGTCGTGAAT
Shewanella sp W3-18-1	Sputw3181_1188	-268	3.8	AATAGTGATTTCTGTCGTGAAT
Shewanella sp ANA-3	Shewana3_1040	-144	4.2	AGTCGCGACTTTGTTCACAATT
Shewanella sp MR-4	Shewmr4_1036	-144	4.2	AGTCGCGACTTTGTTCACAATT
Shewanella sp MR-7	Shewmr7_1101	-144	4.2	AGTCGCGACTTTGTTCACAATT
Shewanella baltica OS155	Sbal_3228	-145	4.2	AGTCGCGACTTTGTTCACAATT
Shewanella denitrificans OS217	Sden_1024	-145	4	AGTCACGATATTGTTCACATAT
Shewanella frigidimarina NCIMB 400	Sfri_1001	-146	4.2	AGTCGCGACATTGTTCACAAAA
Shewanella loihica PV-4	Shew_2816	-99	4	TATTGTGATTTAATACAATTTG
Shewanella sediminis HAW-EB3	Ssed_3379	-245	3.9	CTGTGTGAGGATAAACACAATT
Shewanella woodyi ATCC 51908	Swoo_3550	-103	3.7	TGTTGTGCTTTAGCACAGAATA

Position: -74 Score: 5.2 Sequence: AAATGTGATCTGTCTTACATTT Locus tag: Shew185_3323
	Shew185_3323	-74	5.2	AAATGTGATCTGTCTTACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lipB
Ortholog function: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Shewanella oneidensis MR-1	SO1162	-68	5.1	AAGTGTGATCTATCTTACATTT
Shewanella putrefaciens CN-32	Sputcn32_2875	-69	5.3	AAATGTGATCTATCTTACATTT
Shewanella sp W3-18-1	Sputw3181_1028	-75	5.3	AAATGTGATCTATCTTACATTT
Shewanella sp ANA-3	Shewana3_0989	-74	5.2	AAATGTGATCTGTCTTACATTT
Shewanella sp MR-4	Shewmr4_0985	-74	5.2	AAATGTGATCTGTCTTACATTT
Shewanella sp MR-7	Shewmr7_1050	-74	5.2	AAATGTGATCTGTCTTACATTT
Shewanella baltica OS155	Sbal_3281	-74	5.2	AAATGTGATCTGTCTTACATTT
Shewanella loihica PV-4	Shew_2941	-70	5.3	AAATGTGATCTACCTTACATTT
Shewanella pealeana ATCC 700345	Spea_3155	-76	5.2	AAATGTGATCCGTATTACATTT
Shewanella halifaxensis HAW-EB4	Shal_3240	-76	5.2	AAATGTGATCCGTATTACATTT
Shewanella piezotolerans WP3	swp_3928	-69	5.2	AAATGTGATCTGTCTTACATTT
Shewanella sediminis HAW-EB3	Ssed_3491	-75	5.3	AAATGTGATCTAGCTTACATTT
Shewanella woodyi ATCC 51908	Swoo_3714	-74	5.1	AAGTGTGATCTAGCTTACAATT

Position: -213 Score: 4.6 Sequence: TTATGTGAAGCAGATCGCCATT Locus tag: Shew185_3420
	Shew185_3420	-213	4.6	TTATGTGAAGCAGATCGCCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3089
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32	Sputcn32_0956	-213	4.6	TTATGTGAAGCAGATCGCCATT
Shewanella sp W3-18-1	Sputw3181_3220	-213	4.6	TTATGTGAAGCAGATCGCCATT
Shewanella baltica OS155	Sbal_0942	-213	4.6	TTATGTGAAGCAGATCGCCATT
Shewanella frigidimarina NCIMB 400	Sfri_0964	-141	4.5	TTTTGTGAATTAAAGCAAATAA
Shewanella pealeana ATCC 700345	Spea_3089	-256	4.3	TTTTGCGATTCAGATCACTTTG
Shewanella halifaxensis HAW-EB4	Shal_3174	-268	4.5	TTCCGTGATCAATATCACCTTA
		-40	3.7	ATTTGAGATTCTATTTACAACT
Shewanella sediminis HAW-EB3	Ssed_3418	-227	3.8	TTTTGTACTGTTTTTAAAATAA
Shewanella sediminis HAW-EB3	Ssed_3419	-227	3.9	ATTTCAGATATAAATCAAAAAA

Position: -128 Score: 4.3 Sequence: CAGCGTGATTGCGATCGCATTT Locus tag: Shew185_3438
	Shew185_3438	-128	4.3	CAGCGTGATTGCGATCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA-2
Ortholog function: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Shewanella oneidensis MR-1	SO1103	-129	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella putrefaciens CN-32	Sputcn32_0940	-129	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella sp W3-18-1	Sputw3181_3236	-129	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella sp ANA-3	Shewana3_0938	-129	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella sp MR-4	Shewmr4_0936	-129	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella sp MR-7	Shewmr7_0974	-129	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella baltica OS155	Sbal_0924	-128	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella denitrificans OS217	Sden_0982	-128	4.3	CAGCGTGATTGCGATCGCATTA
Shewanella frigidimarina NCIMB 400	Sfri_0949	-127	4.3	CAGCGTGATTATGATCGCATTT
Shewanella amazonensis SB2B	Sama_2539	-127	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella loihica PV-4	Shew_2881	-131	4.3	CAGCGTGATTGCGATCGCATTT
		-73	4.1	ATGTTTGAAATCTATCTCATTT
Shewanella pealeana ATCC 700345	Spea_3103	-133	4.4	CAGCGTGATTCTGATCGCATTT
Shewanella halifaxensis HAW-EB4	Shal_3187	-127	3.7	CAGCGTGATTACAGTCGCACTT
Shewanella piezotolerans WP3	swp_1167	-132	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella sediminis HAW-EB3	Ssed_3431	-130	4.1	CAGCGTGATTGCGGTCGCATTT
Shewanella woodyi ATCC 51908	Swoo_3617	-46	4	CAGCGTGATTGCGGTCGCAAAT

Position: -75 Score: 4 Sequence: TTGGGTTAGCAAGATCACATTA Locus tag: Shew185_3534
	Shew185_3534	-75	4	TTGGGTTAGCAAGATCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cadC
Ortholog function: transcriptional regulator-related protein
Shewanella oneidensis MR-1	SO0940	-246	4.3	TAATGTGAGCGAAGGCACGATA
Shewanella sp MR-4	Shewmr4_0783	-246	3.8	CAATGTGCATCAACGCACATTA
Shewanella sp MR-7	Shewmr7_3240	-246	3.8	CAATGTGTGCCTGCGCACATTA
Shewanella baltica OS155	Sbal_0833	-75	4	TTGGGTTAGCAAGATCACATTA
Shewanella frigidimarina NCIMB 400	Sfri_3632	-334	4.6	AAATGTGATTCAAAGCAGATAA
		-234	4.3	TTTCATGATGTAAGTCTCATTA
		-156	5	TGACGTGATATCGCTCACAAAT
Shewanella loihica PV-4	Shew_0760	-234	3.9	CGATGTGAAGCTGATCACTCTA
Shewanella pealeana ATCC 700345	Spea_3438	-227	4.2	TTTCATGAACGATGTCACATTA
		-149	3.8	GAGTGTGACTAACGTCTCATTT
Shewanella halifaxensis HAW-EB4	Shal_3519	-227	4.6	TTCTGTGACCGATAGCACATTA
		-149	4.4	CTGTGTGATTAACCTCTCATTT
Shewanella piezotolerans WP3	swp_4010	-258	4.3	TTTATTGATCTAGATCTAATAA
Shewanella sediminis HAW-EB3	Ssed_0883	-147	4.7	CAGTGTGATTTTGTTCGCAAAA
Shewanella woodyi ATCC 51908	Swoo_0885	-232	4.2	AATGGTGAGCTGGATCATGTTA
		-145	4.5	CAATGTGATCCTCTTCGCAAAC

Position: -280 Score: 4.6 Sequence: TTTTGTGATCTAGATCCAATTC Locus tag: Shew185_3552
	Shew185_3552	-280	4.6	TTTTGTGATCTAGATCCAATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0919
Ortholog function: Serine transporter, putative
Shewanella baltica OS155	Sbal_0765	-280	4.1	TTTTGTGATCTAGATCCAATCC
		-139	4	ATCAGCGATCTAGATCTCAATA
Shewanella frigidimarina NCIMB 400	Sfri_0688	-146	4.1	ATAGTTGATTCAGAACACATTA
Shewanella pealeana ATCC 700345	Spea_0771	-161	4.2	TTAAGAGATCTAGCTCTCAATT
Shewanella halifaxensis HAW-EB4	Shal_0823	-160	4.3	TTAAGCGATCTAGCTCTCAATT

Position: -231 Score: 4.6 Sequence: TTTTGTGATCTCTTTTACTTAA Locus tag: Shew185_3600
	Shew185_3600	-231	4.6	TTTTGTGATCTCTTTTACTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ampG
Ortholog function: AmpG permease
Shewanella putrefaciens CN-32	Sputcn32_0819	-116	4.4	TAATGTGATTGGTATAATATAC
Shewanella sp W3-18-1	Sputw3181_3354	-116	4.4	TAATGTGATTGGTATAATATAC
Shewanella sp ANA-3	Shewana3_0783	-142	4.1	AATTGTTAAGTATTTCATATTG
Shewanella sp MR-4	Shewmr4_3155	-142	4.1	AATTGTTAAGTATTTCATATTG
Shewanella sp MR-7	Shewmr7_0812	-142	4.1	AATTGTTAAGTATTTCATATTG
Shewanella baltica OS155	Sbal_0711	-218	4.4	TTTTGTGATCTCTTTTACTCAA
Shewanella sediminis HAW-EB3	Ssed_3442	-203	4.3	TAACGTGATGAAAGTAAAATTT

Position: -55 Score: 4.4 Sequence: TTACGTGACTTACAGCACGTAT Locus tag: Shew185_3634
	Shew185_3634	-55	4.4	TTACGTGACTTACAGCACGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sfcA
Ortholog function: NAD-dependent malic enzyme (EC 1.1.1.38)
Shewanella oneidensis MR-1	SO3855	-66	4	TTACGTGACCTATAGCACGTCT
Shewanella putrefaciens CN-32	Sputcn32_0784	-54	4.4	TTACGTGACTTAAAGCACGTAT
Shewanella sp W3-18-1	Sputw3181_3391	-54	4.4	TTACGTGACTTAAAGCACGTAT
Shewanella sp ANA-3	Shewana3_0750	-65	3.9	TTACGTGACTTACAGCACGTCT
Shewanella sp MR-4	Shewmr4_3188	-66	3.9	TTACGTGACTTACAGCACGTCT
Shewanella sp MR-7	Shewmr7_0778	-66	3.9	TTACGTGACTTACAGCACGTCT
Shewanella baltica OS155	Sbal_0676	-55	4.4	TTACGTGACTTACAGCACGTAT
Shewanella frigidimarina NCIMB 400	Sfri_0833	-122	5	TAATGTGATTTTACTCACTTAA
Shewanella sediminis HAW-EB3	Ssed_3518	-87	3.7	AAACGCAACAAAGATCACACTT

Position: -46 Score: 4.3 Sequence: AAATTAGATCCATGTCACACAT Locus tag: Shew185_3685
	Shew185_3685	-46	4.3	AAATTAGATCCATGTCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mdh
Ortholog function: malate dehydrogenase (EC 1.1.1.37)
Shewanella oneidensis MR-1	SO0770	-47	4.3	AAATTAGATCCATGTCACACAT
Shewanella putrefaciens CN-32	Sputcn32_3219	-46	4	AAACTAGATCCATGTCACACAT
Shewanella sp W3-18-1	Sputw3181_0722	-46	4	AAACTAGATCCATGTCACACAT
Shewanella sp ANA-3	Shewana3_3509	-46	4.3	AAATTAGATCCATGTCACACAT
Shewanella sp MR-4	Shewmr4_3339	-46	4.3	AAATTAGATCCATGTCACACAT
Shewanella sp MR-7	Shewmr7_0614	-46	4.3	AAATTAGATCCATGTCACACAT
Shewanella baltica OS155	Sbal_0609	-46	4.3	AAATTAGATCCATGTCACACAT
Shewanella frigidimarina NCIMB 400	Sfri_3173	-45	4.2	AATTTAGATCTATGTCACAAAC
Shewanella amazonensis SB2B	Sama_0672	-46	3.8	TTTGAGGATCTACCTCACAAAT
Shewanella loihica PV-4	Shew_0867	-47	4.5	AATCTAGATCTATATCACATAA
Shewanella halifaxensis HAW-EB4	Shal_0903	-46	3.9	AAGATGGATCTGAATCACAAAA
Shewanella piezotolerans WP3	swp_4100	-46	3.9	AAAACAGATCTAAATCACAAAA
Shewanella sediminis HAW-EB3	Ssed_0952	-136	4.1	TTTATTGATGTAGAACAAAAAT
Shewanella woodyi ATCC 51908	Swoo_1002	-47	3.8	AATGTAGACCTACATCACAAAA

Position: -270 Score: 4.5 Sequence: ATGTGTGACATGGATCTAATTT Locus tag: Shew185_3686
	Shew185_3686	-270	4.5	ATGTGTGACATGGATCTAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: arginine pathway regulatory protein ArgR, repressor of arg regulon
Shewanella oneidensis MR-1	SO0769	-266	4.5	ATGTGTGACATGGATCTAATTT
Shewanella putrefaciens CN-32	Sputcn32_3220	-259	4.2	ATGTGTGACATGGATCTAGTTT
Shewanella sp W3-18-1	Sputw3181_0721	-259	4.2	ATGTGTGACATGGATCTAGTTT
Shewanella sp ANA-3	Shewana3_3510	-266	4.5	ATGTGTGACATGGATCTAATTT
Shewanella sp MR-4	Shewmr4_3340	-266	4.5	ATGTGTGACATGGATCTAATTT
Shewanella sp MR-7	Shewmr7_0613	-266	4.5	ATGTGTGACATGGATCTAATTT
Shewanella baltica OS155	Sbal_0608	-270	4.5	ATGTGTGACATGGATCTAATTT
Shewanella amazonensis SB2B	Sama_0671	-262	4	ATTTGTGAGGTAGATCCTCAAA
Shewanella loihica PV-4	Shew_0866	-282	4.6	TTATGTGATATAGATCTAGATT
Shewanella piezotolerans WP3	swp_4101	-140	3.8	ATTTATACTCTACATCATATTT
Shewanella sediminis HAW-EB3	Ssed_0951	-254	3.8	ATTTTTGTTCTACATCAATAAA
Shewanella woodyi ATCC 51908	Swoo_1001	-311	4.5	TTTTGTGATGTAGGTCTACATT

Position: -149 Score: 4.2 Sequence: AAGTGTGAACAACAACACCTTT Position: -126 Score: 4.1 Sequence: CATTTTGATCTAGCGCAAACTT Locus tag: Shew185_3711
	Shew185_3711	-149	4.2	AAGTGTGAACAACAACACCTTT
		-126	4.1	CATTTTGATCTAGCGCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: cytochrome c552 precursor (EC 1.7.2.2)
Shewanella oneidensis MR-1	SO3980	-149	3.9	AAGTGTGAACAACAACACTATT
		-126	4.1	CATTTTGATCTAGCGCAAACTT
Shewanella putrefaciens CN-32	Sputcn32_0685	-149	3.9	AAGTGTGAACAACAACACTATT
		-126	4.1	CATTTTGATCTGGCGCAAACTT
Shewanella sp W3-18-1	Sputw3181_3486	-149	3.9	AAGTGTGAACAACAACACTATT
		-126	4.1	CATTTTGATCTGGCGCAAACTT
Shewanella sp ANA-3	Shewana3_0658	-131	3.9	AAGTGTGAACAACAACACTATT
		-108	4.1	CATTTTGATCTAGCGCAAACTT
Shewanella sp MR-4	Shewmr4_0659	-131	3.9	AAGTGTGAACAACAACACTATT
		-108	4.1	CATTTTGATCTAGCGCAAACTT
Shewanella sp MR-7	Shewmr7_3363	-131	3.9	AAGTGTGAACAACAACACTATT
		-108	4.1	CATTTTGATCTAGCGCAAACTT
Shewanella baltica OS155	Sbal_0794	-149	4.4	AAATGTGAACAACAACACCTTT
		-126	4.1	CATTTTGATCTAGCGCAAACTT
Shewanella loihica PV-4	Shew_0844	-156	4.5	AAATGTGACCAACAACACATTC
		-133	4.2	CATTATGATCTGCCTCAAGTTT
Shewanella pealeana ATCC 700345	Spea_0831	-183	4	ATACTTGATTACATTAACAAAT
		-155	3.8	AAGTGTGAGCAACAACACGTTC
		-71	4.1	ATAAGTGATTAAATTCAACCTT
Shewanella halifaxensis HAW-EB4	Shal_0886	-152	4.2	AAGTGTGAGCAACAACACATTC
Shewanella piezotolerans WP3	swp_3958	-150	4	AAATGTGAGCAACAACACGTTC
Shewanella sediminis HAW-EB3	Ssed_0931	-154	4.6	AAGTGTGAGCAACACCACATTT
		-131	3.9	CATTTTGATCTACCGCATACTT
Shewanella woodyi ATCC 51908	Swoo_0972	-154	4.4	AAATGTGAGCAACAACACGTTT

Position: -98 Score: 4.3 Sequence: AAAGGTGTTGTTGTTCACACTT Locus tag: Shew185_3712
	Shew185_3712	-98	4.3	AAAGGTGTTGTTGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Shewanella oneidensis MR-1	SO3981	-174	3.7	AAGTTTGCGCTAGATCAAAATG
		-151	4.5	AATAGTGTTGTTGTTCACACTT
Shewanella putrefaciens CN-32	Sputcn32_0684	-114	4.5	AATAGTGTTGTTGTTCACACTT
Shewanella sp W3-18-1	Sputw3181_3487	-114	4.5	AATAGTGTTGTTGTTCACACTT
Shewanella sp ANA-3	Shewana3_0657	-138	3.7	AAGTTTGCGCTAGATCAAAATG
		-115	4.5	AATAGTGTTGTTGTTCACACTT
Shewanella sp MR-4	Shewmr4_0658	-139	3.7	AAGTTTGCGCTAGATCAAAATG
		-116	4.5	AATAGTGTTGTTGTTCACACTT
Shewanella sp MR-7	Shewmr7_3364	-139	3.7	AAGTTTGCGCTAGATCAAAATG
		-116	4.5	AATAGTGTTGTTGTTCACACTT
Shewanella baltica OS155	Sbal_0793	-121	3.7	AAGTTTGCGCTAGATCAAAATG
		-98	4.5	AAAGGTGTTGTTGTTCACATTT
Shewanella frigidimarina NCIMB 400	Sfri_0621	-140	3.9	AAACAGGATGTATCTCACAGTT
Shewanella amazonensis SB2B	Sama_0647	-112	4	GGATGTGTTATTGTTCACACTT
Shewanella loihica PV-4	Shew_0843	-136	3.9	AAACTTGAGGCAGATCATAATG
		-113	4.4	GAATGTGTTGTTGGTCACATTT
Shewanella pealeana ATCC 700345	Spea_0830	-109	4	GAACGTGTTGTTGCTCACACTT
		-81	3.8	ATTTGTTAATGTAATCAAGTAT
Shewanella halifaxensis HAW-EB4	Shal_0885	-111	4.3	GAATGTGTTGTTGCTCACACTT
Shewanella sediminis HAW-EB3	Ssed_0930	-113	4.8	AAATGTGGTGTTGCTCACACTT
Shewanella woodyi ATCC 51908	Swoo_0971	-112	4.8	AAACGTGTTGTTGCTCACATTT

Position: -277 Score: 3.7 Sequence: TAAAGCGATATATGTAACAAAC Locus tag: Shew185_3718
	Shew185_3718	-277	3.7	TAAAGCGATATATGTAACAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3987
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO3987	-83	3.9	TCTTGTGAGCGAGTTCACGCCT
Shewanella putrefaciens CN-32	Sputcn32_0679	-83	4	TCTTGTGAGCCAGTTCACGCCT
Shewanella sp W3-18-1	Sputw3181_3492	-83	4	TCTTGTGAGCCAGTTCACGCCT
Shewanella sp ANA-3	Shewana3_0651	-83	4	TCTTGTGAGCCAGTTCACGCCT
Shewanella sp MR-4	Shewmr4_0652	-83	4.1	TCTTGTGACCTAGTTCACGCCT
Shewanella sp MR-7	Shewmr7_3370	-83	4.1	TCTTGTGACCTAGTTCACGCCT
Shewanella baltica OS155	Sbal_0787	-277	3.7	TAAAGCGATATATGTAACAAAC
Shewanella amazonensis SB2B	Sama_0602	-307	4.1	AAATTGAATATGGATCACATTT
Shewanella loihica PV-4	Shew_0778	-147	5.1	AGATTTGATGTAAATCACATTT
		-82	4.4	TAAAGTGACCTGTCTCACACCT
Shewanella pealeana ATCC 700345	Spea_0734	-147	4.1	CGATATGATTTGGATCACTTTT
		-82	4.2	AATAGTGATATACATCACAAGG
Shewanella halifaxensis HAW-EB4	Shal_0787	-81	4.9	AATAGTGATGCAGATCACACTG
Shewanella piezotolerans WP3	swp_4346	-4	4.6	TACTGTGATCGATATCACGTCT
Shewanella sediminis HAW-EB3	Ssed_0816	-321	3.9	AAACTCAATATAGTTCACATTT
		-147	3.9	GGATATGATCTAAATCACACTG
Shewanella woodyi ATCC 51908	Swoo_3763	-82	4.3	TTGTGTGACCTGCATCACGCCA

Position: -278 Score: 4.4 Sequence: TTTAGTGATTTAAGTCAACTAA Locus tag: Shew185_3746
	Shew185_3746	-278	4.4	TTTAGTGATTTAAGTCAACTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sel1
Ortholog function: Sel1 domain protein repeat-containing protein precursor
Shewanella oneidensis MR-1	SO0625	-267	4.2	TTTAGTGATATTAGTCAACTAA
Shewanella putrefaciens CN-32	Sputcn32_0653	-270	4.2	TTTAGTGATATTAGTCAACTAA
Shewanella sp W3-18-1	Sputw3181_3521	-270	4.2	TTTAGTGATATTAGTCAACTAA
Shewanella sp ANA-3	Shewana3_0618	-270	4.2	TTTAGTGATATTAGTCAACTAA
Shewanella sp MR-4	Shewmr4_0619	-270	4.2	TTTAGTGATATTAGTCAACTAA
Shewanella sp MR-7	Shewmr7_3411	-270	4.2	TTTAGTGATATTAGTCAACTAA
Shewanella baltica OS155	Sbal_0579	-278	4.4	TTTAGTGATTTAAGTCAACTAA
Shewanella frigidimarina NCIMB 400	Sfri_3291	-222	4.1	AACTTTGATAGAGATCGTATTT
		-147	4.3	ATTTGTGATGACGGTCGACTTT
		-38	4	TTATTTAATCAGCTTCATAAAT
Shewanella amazonensis SB2B	Sama_3003	-319	3.8	AACCATGATGCAGATCGAAATT
Shewanella loihica PV-4	Shew_0586	-279	3.8	ATTAGTAATATATGTCAACTAA
Shewanella piezotolerans WP3	swp_0756	-153	3.8	TTTTTTGAACCTTATCAATAAA
Shewanella sediminis HAW-EB3	Ssed_3872	-296	4.3	ATTAGTGATATAAGTCAACTAA
Shewanella woodyi ATCC 51908	Swoo_0663	-298	4.3	ATTAGTGATATAAGTCAACTAA

Position: -174 Score: 3.7 Sequence: TTAGTTGACTTAAATCACTAAA Locus tag: Shew185_3747
	Shew185_3747	-174	3.7	TTAGTTGACTTAAATCACTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: Cyclic AMP receptor protein Crp
Shewanella oneidensis MR-1	SO0624	-174	3.5	TTAGTTGACTAATATCACTAAA
Shewanella putrefaciens CN-32	Sputcn32_0652	-174	3.5	TTAGTTGACTAATATCACTAAA
Shewanella sp W3-18-1	Sputw3181_3522	-174	3.5	TTAGTTGACTAATATCACTAAA
Shewanella sp ANA-3	Shewana3_0617	-174	3.5	TTAGTTGACTAATATCACTAAA
Shewanella sp MR-4	Shewmr4_0618	-174	3.5	TTAGTTGACTAATATCACTAAA
Shewanella sp MR-7	Shewmr7_3412	-174	3.5	TTAGTTGACTAATATCACTAAA
Shewanella baltica OS155	Sbal_0578	-174	3.7	TTAGTTGACTTAAATCACTAAA
Shewanella denitrificans OS217	Sden_3190	-94	3.6	AAACACGATCTTGGTCAAAGTT
Shewanella frigidimarina NCIMB 400	Sfri_3292	-97	4	AAATACGATCTCTATCAAAGTT
Shewanella amazonensis SB2B	Sama_3004	-96	3.8	AATTTCGATCTGCATCATGGTT
Shewanella loihica PV-4	Shew_0585	-238	4	AGATGTGATATGGGCAACATTG
Shewanella pealeana ATCC 700345	Spea_3509	-225	3.6	AGATGTGATATAAGCCTAATTG
Shewanella halifaxensis HAW-EB4	Shal_3603	-226	3.5	AGATGTGATACAAGCCTAATTG
Shewanella piezotolerans WP3	swp_0755	-309	4.2	TTTATTGATAAGGTTCAAAAAA
Shewanella sediminis HAW-EB3	Ssed_3873	-173	3.8	TTAGTTGACTTATATCACTAAT
Shewanella woodyi ATCC 51908	Swoo_0662	-173	3.8	TTAGTTGACTTATATCACTAAT

Position: -308 Score: 3.6 Sequence: AATGGTGTAGTTATTCACATTC Position: -142 Score: 4.1 Sequence: AACTGGTATTTTGATCACATTT Locus tag: Shew185_3754
	Shew185_3754	-308	3.6	AATGGTGTAGTTATTCACATTC
		-142	4.1	AACTGGTATTTTGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Shewanella oneidensis MR-1	SO0617	-142	4	AACTGGTATTTTGATCACAATT
Shewanella putrefaciens CN-32	Sputcn32_0645	-142	4.1	AACTGGTATTTTGATCACATTT
Shewanella sp W3-18-1	Sputw3181_3529	-142	4.1	AACTGGTATTTTGATCACATTT
Shewanella sp ANA-3	Shewana3_0610	-142	4	AACTGGTATTTTGATCACAATT
Shewanella sp MR-4	Shewmr4_0611	-142	4	AACTGGTATTTTGATCACAATT
Shewanella sp MR-7	Shewmr7_3419	-308	3.8	AATTGTGTAGTTATTCATATTC
Shewanella baltica OS155	Sbal_0571	-142	4.1	AACTGGTATTTTGATCACATTT
Shewanella denitrificans OS217	Sden_3193	-136	4.1	AACTGGTATTTTGATCACATTT
Shewanella frigidimarina NCIMB 400	Sfri_3299	-137	4.1	AACTGGTATTTTGATCACATTT
Shewanella amazonensis SB2B	Sama_3011	-142	4	AACTGGTATTTCGATCACAATT
Shewanella loihica PV-4	Shew_0578	-140	3.8	AACTGGTATTTTGATCACGTTT
Shewanella pealeana ATCC 700345	Spea_3516	-138	4.1	AACTGGTATTTTGATCACATTT
Shewanella halifaxensis HAW-EB4	Shal_3610	-138	3.7	AACTGGCATTCTGATCACATTT
Shewanella piezotolerans WP3	swp_0747	-140	4.1	AACTGGTATTTTGATCACATTT
Shewanella sediminis HAW-EB3	Ssed_0809	-141	4.1	AACTGGTATTTTGATCACATTT
		-121	3.9	TTTCGTTATTAATGTCACTTAA
Shewanella woodyi ATCC 51908	Swoo_0655	-172	4.3	ATATGTGCTGCTGATCTTATTT

Position: -131 Score: 3.7 Sequence: CACTATGATCTGCTTCTAATTT Position: -102 Score: 3.7 Sequence: TAATGAGCCCCGCTTCAAACTT Locus tag: Shew185_3763
	Shew185_3763	-131	3.7	CACTATGATCTGCTTCTAATTT
		-102	3.7	TAATGAGCCCCGCTTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: petA
Ortholog function: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Shewanella oneidensis MR-1	SO0608	-132	3.7	CACTATGATCTGCTTCTAATTT
		-103	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella putrefaciens CN-32	Sputcn32_3276	-130	3.7	CACTATGATCTGCTTCTAATTT
		-101	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella sp W3-18-1	Sputw3181_0665	-130	3.7	CACTATGATCTGCTTCTAATTT
		-101	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella sp ANA-3	Shewana3_0601	-132	3.7	CACTATGATCTGCTTCTAATTT
		-103	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-4	Shewmr4_0602	-132	3.7	CACTATGATCTGCTTCTAATTT
		-103	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-7	Shewmr7_3428	-132	3.7	CACTATGATCTGCTTCTAATTT
		-103	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella baltica OS155	Sbal_0562	-131	3.7	CACTATGATCTGCTTCTAATTT
		-102	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella frigidimarina NCIMB 400	Sfri_3307	-129	3.8	CACTATGATCTGGTTCTAATTT
Shewanella loihica PV-4	Shew_0570	-130	4.1	TACTATGATCTGCTTCTAATTT
		-101	3.9	TAATGAGCCCCGCCTCAAATTT
Shewanella pealeana ATCC 700345	Spea_3536	-78	4.2	AACTATGATCTGGTTCTAATTT
Shewanella halifaxensis HAW-EB4	Shal_3630	-128	4.6	AACTATGATCTGGCTCAAATTT
Shewanella piezotolerans WP3	swp_0793	-131	4.2	AACTATGATCTGGTTCTAATTT
Shewanella sediminis HAW-EB3	Ssed_0801	-132	4.4	TACTATGATCAAGCTCAAATTT
Shewanella woodyi ATCC 51908	Swoo_4166	-129	3.8	TACTATGATCTGCTTCTGATTT

Position: -170 Score: 4.2 Sequence: TTTTGTTACATGGCGCACGTTT Locus tag: Shew185_3782
	Shew185_3782	-170	4.2	TTTTGTTACATGGCGCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0584
Ortholog function: methyl-accepting chemotaxis protein
Shewanella putrefaciens CN-32	Sputcn32_3294	-147	4.3	ATTTGTTACTCTGCGCACATTT
Shewanella sp W3-18-1	Sputw3181_0647	-147	4.3	ATTTGTTACTCTGCGCACATTT
Shewanella sp ANA-3	Shewana3_0582	-157	4.4	TTTTGTTACTCATCGCACATTT
Shewanella sp MR-4	Shewmr4_0583	-156	4.4	TTTTGTTACTCATCGCACATTT
Shewanella sp MR-7	Shewmr7_3447	-156	4.4	TTTTGTTACTCATCGCACATTT
Shewanella baltica OS155	Sbal_0543	-170	4.2	TTTTGTTACATGGCGCACGTTT

Position: -113 Score: 3.9 Sequence: AAACGTGCGCCATGTAACAAAA Locus tag: Shew185_3783
	Shew185_3783	-113	3.9	AAACGTGCGCCATGTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: bacterioferritin-associated ferredoxin
Shewanella putrefaciens CN-32	Sputcn32_3295	-125	4	AAATGTGCGCAGAGTAACAAAT
Shewanella sp W3-18-1	Sputw3181_0646	-125	4	AAATGTGCGCAGAGTAACAAAT
Shewanella sp ANA-3	Shewana3_0581	-113	4.1	AAATGTGCGATGAGTAACAAAA
Shewanella sp MR-4	Shewmr4_0582	-113	4.1	AAATGTGCGATGAGTAACAAAA
Shewanella sp MR-7	Shewmr7_3448	-113	4.1	AAATGTGCGATGAGTAACAAAA
Shewanella baltica OS155	Sbal_0542	-113	3.9	AAACGTGCGCCATGTAACAAAA
Shewanella frigidimarina NCIMB 400	Sfri_3324	-275	3.9	TAATCTGATCCGGCTAACACCT
		-253	3.8	AATATTAACCGCTTTCACAAAT
Shewanella amazonensis SB2B	Sama_3040	-99	4.1	AAGTGAGAAATAGCTCACCTAT
Shewanella pealeana ATCC 700345	Spea_3555	-98	3.9	TTAGGCGATCCGACTAACAATT

Position: -102 Score: 4.3 Sequence: TATTTTGACTCAAGTCAAAAAA Locus tag: Shew185_3792
	Shew185_3792	-102	4.3	TATTTTGACTCAAGTCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0572
Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17)
Shewanella oneidensis MR-1	SO0572	-102	4.4	TATTTTGACTCAAGTCAAAATT
Shewanella putrefaciens CN-32	Sputcn32_3304	-102	4.3	TATTTTGACTAAGGTCAAAATT
Shewanella sp W3-18-1	Sputw3181_0637	-102	4.3	TATTTTGACTAAGGTCAAAATT
Shewanella sp ANA-3	Shewana3_0572	-102	4.4	TATTTTGACTCATGTCAAAAAT
Shewanella sp MR-4	Shewmr4_0573	-102	4.5	TATTTTGACGCATGTCAAAATT
Shewanella sp MR-7	Shewmr7_3457	-102	4.5	TATTTTGACGCATGTCAAAATT
Shewanella baltica OS155	Sbal_0533	-102	4.3	TATTTTGACTCAAGTCAAAAAA
Shewanella denitrificans OS217	Sden_0534	-100	3.7	ATTTTTGACTAGGGTCAATATT
Shewanella frigidimarina NCIMB 400	Sfri_3510	-237	4.2	CATTGTGATCAATGTCATATCA
Shewanella loihica PV-4	Shew_0454	-124	4.3	TATTTTGACGCCAGTCAAAAAA
Shewanella pealeana ATCC 700345	Spea_3709	-110	3.7	AAAAATGACCAATGTCATAATT
Shewanella halifaxensis HAW-EB4	Shal_3794	-110	3.9	TAAAATGATGAGTGTCATAATT
Shewanella piezotolerans WP3	swp_0563	-110	3.6	TTTATTGACGATAGTCAAAAAA
Shewanella sediminis HAW-EB3	Ssed_0623	-108	4.1	TTTTTTGACTGAAGTCAAACTT

Position: -146 Score: 4.7 Sequence: TTTTGTGATTGAGAGCACAACA Locus tag: Shew185_3822
	Shew185_3822	-146	4.7	TTTTGTGATTGAGAGCACAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0544
Ortholog function: sensory box histidine kinase
Shewanella baltica OS155	Sbal_0502	-145	4.7	TTTTGTGATTGAGAGCACAACA

Position: -201 Score: 4.8 Sequence: TGTTGTGCTCTCAATCACAAAA Position: -88 Score: 3.9 Sequence: AATTTTACCCTGACTCACAAAA Locus tag: Shew185_3823
	Shew185_3823	-201	4.8	TGTTGTGCTCTCAATCACAAAA
		-88	3.9	AATTTTACCCTGACTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0543
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO0543	-192	3.7	CGTTATGCGCTAAATCACAAAA
Shewanella putrefaciens CN-32	Sputcn32_3331	-88	4.2	ATTTTTACTCTAATTCACAAAA
Shewanella sp W3-18-1	Sputw3181_0610	-88	4.2	ATTTTTACTCTAATTCACAAAA
Shewanella sp ANA-3	Shewana3_0541	-193	4.1	AGTTATGCGCTAAATCACAAAA
Shewanella sp MR-4	Shewmr4_0542	-192	4	AGTTATGCGCTTAATCACAAAA
Shewanella sp MR-7	Shewmr7_3488	-191	4	AGTTATGCGCTTAATCACAAAA
Shewanella baltica OS155	Sbal_0501	-201	4.8	TGTTGTGCTCTCAATCACAAAA
		-88	3.9	AATTTTACCCTGATTCACAAAA
Shewanella denitrificans OS217	Sden_0657	-34	3.9	TAATATGACTAGAGTCAAACAT
Shewanella frigidimarina NCIMB 400	Sfri_3534	-200	4	ATATTTGATCACAAGCACACTC
Shewanella amazonensis SB2B	Sama_3164	-240	3.9	CATTGTTACTCACTTCATACAT
		-126	3.9	ATTTATGACCATACTCACAGAG
Shewanella loihica PV-4	Shew_0428	-190	4.2	TAGTGTTAACTCGATCAAACAA
Shewanella pealeana ATCC 700345	Spea_3733	-197	4.2	TTTTGCTACATAGATCGCATAT
Shewanella halifaxensis HAW-EB4	Shal_3818	-235	4.7	TTTTGTTACATGGATCGCATAT
Shewanella piezotolerans WP3	swp_0532	-156	4.6	TTTTGTTACACAGATCGCATAT
Shewanella sediminis HAW-EB3	Ssed_0598	-213	4.2	TAATGTTAAATCGATCTCACTT
Shewanella woodyi ATCC 51908	Swoo_4355	-215	3.8	AATTGCTAGATAGATCTCACTT

Position: -328 Score: 3.8 Sequence: GAATGTGATCTGTCTCGGCATT Position: -133 Score: 4.3 Sequence: TAATGTGCTCTAGCGCAGATTT Locus tag: Shew185_3877
	Shew185_3877	-328	3.8	GAATGTGATCTGTCTCGGCATT
		-133	4.3	TAATGTGCTCTAGCGCAGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mccA
Ortholog function: cytochrome c, putative
Shewanella putrefaciens CN-32	Sputcn32_3364	-328	4.3	TAATGTGATCTTATTCGTTATT
		-132	4.3	TAATGTGCTCTAGCTCTGATTT
Shewanella sp W3-18-1	Sputw3181_0577	-328	4.3	TAATGTGATCTTATTCGTTATT
		-132	4.3	TAATGTGCTCTAGCTCTGATTT
Shewanella sp ANA-3	Shewana3_0489	-328	3.8	GAATGTGATCTGTCTCGGCATT
Shewanella sp MR-4	Shewmr4_0488	-328	3.8	GAATGTGATCTGTCTCGGCATT
		-133	4.4	TAATGTGCTCTAGCTCAGGTTT
Shewanella sp MR-7	Shewmr7_3542	-328	3.8	GAATGTGATCTGTCTCGGCATT
		-133	4.4	TAATGTGCTCTAGCTCAGGTTT

Position: -262 Score: 4.2 Sequence: TGGCGTGATCTATGTCGCAGTT Position: -154 Score: 3.8 Sequence: TTTGGTGATTATTGTCGCGAAT Position: -57 Score: 3.8 Sequence: AAGTGTGATCTATGCCCTAAAT Locus tag: Shew185_3907
	Shew185_3907	-262	4.2	TGGCGTGATCTATGTCGCAGTT
		-154	3.8	TTTGGTGATTATTGTCGCGAAT
		-57	3.8	AAGTGTGATCTATGCCCTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nadC
Ortholog function: di-and tricarboxylate transporter
Shewanella putrefaciens CN-32	Sputcn32_3393	-262	4.5	AAGCGTGATTAGTGTCACAGTT
		-154	4.1	TTTGGTGATTTTTGTCGCGTAA
		-125	3.9	TTTTGCGATTTTTATCGACAAA
		-92	3.8	TGATGTGATAAAGCTACAAAAT
		-57	4.4	ATGTGTGATCTATGCCATAAAT
Shewanella sp W3-18-1	Sputw3181_0550	-262	4.8	AAGTGTGATTAGTGTCACAGTT
		-154	4.1	TTTGGTGATTTTTGTCGCGTAA
		-125	3.9	TTTTGCGATTTTTATCGACAAA
		-92	3.8	TGATGTGATAAAGCTACAAAAT
		-57	3.8	GTGTGTGATCTATGCCATAAAT
Shewanella sp ANA-3	Shewana3_0451	-262	4.4	AAGTTTGACATGGGTCACAGTT
Shewanella baltica OS155	Sbal_0427	-57	3.8	AAGTGTGATCTATGCCCTAAAT
Shewanella pealeana ATCC 700345	Spea_2663	-262	4.3	TAAAGTGATCGCGATCACACCG
		-152	4.4	AATAGTGACAAACATCACATCA
Shewanella halifaxensis HAW-EB4	Shal_2750	-250	4.5	TAAAGAGATCGAGATCACACTA
		-140	3.8	TTAAGAGATGTTTATCGCAATC
Shewanella piezotolerans WP3	swp_3241	-123	3.8	TTATGCGCCCTTCATCACCCTA
Shewanella sediminis HAW-EB3	Ssed_1560	-127	3.9	AAAATAGATCTACTTCACCTAT

Position: -195 Score: 4 Sequence: TATTGTGAAATCACGCAGAAAA Locus tag: Shew185_3913
	Shew185_3913	-195	4	TATTGTGAAATCACGCAGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purH
Ortholog function: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Shewanella oneidensis MR-1	SO0442	-180	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella putrefaciens CN-32	Sputcn32_3401	-193	4	TATTGTGAAATCACGCAGAAAA
Shewanella sp W3-18-1	Sputw3181_0542	-193	4	TATTGTGAAATCACGCAGAAAA
Shewanella sp ANA-3	Shewana3_0441	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-4	Shewmr4_0445	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-7	Shewmr7_3584	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella baltica OS155	Sbal_0420	-195	4	TATTGTGAAATCACGCAGAAAA
Shewanella frigidimarina NCIMB 400	Sfri_0493	-195	3.9	TATTGTGAAATCACACAGAAAA
Shewanella amazonensis SB2B	Sama_0395	-194	4	TATTGTGAAATCACGCAGAAAA
Shewanella loihica PV-4	Shew_3412	-182	4	TATTGTGAAATCGCACAGAAAA
Shewanella pealeana ATCC 700345	Spea_0432	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella halifaxensis HAW-EB4	Shal_0488	-182	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella piezotolerans WP3	swp_4724	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella sediminis HAW-EB3	Ssed_0444	-282	4	GAGTGTGACGCTCTGCACAAAT
		-191	4.2	TATTGTGAAATCGTGCAGAAAA
Shewanella woodyi ATCC 51908	Swoo_0296	-192	3.6	TATTGTGAAATCACATATAAAT

Position: -93 Score: 4.8 Sequence: AAATGTGACCTAAAGCACATAC Locus tag: Shew185_3917
	Shew185_3917	-93	4.8	AAATGTGACCTAAAGCACATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0439
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO0439	-34	4.4	ATACGTGATCTGACGCACATCA
Shewanella putrefaciens CN-32	Sputcn32_3403	-90	4.5	AAATGTGAACCAGAGCACACTC
Shewanella sp W3-18-1	Sputw3181_0540	-90	4.5	AAATGTGAACCAGAGCACACTC
Shewanella sp ANA-3	Shewana3_0438	-78	4.2	AAGCGTGAGCTAACGCACACAA
Shewanella sp MR-4	Shewmr4_0442	-77	3.8	AAGCGTGAACTTAAGCACACTC
Shewanella sp MR-7	Shewmr7_3587	-77	3.8	AAGCGTGAACTTAAGCACACTC
Shewanella baltica OS155	Sbal_0417	-93	4.8	AAATGTGACCTAAAGCACATAC
Shewanella frigidimarina NCIMB 400	Sfri_0491	-135	5.2	TTTTATGATTTAGATCACAAAA
Shewanella pealeana ATCC 700345	Spea_0430	-137	4.8	TTTTGTGATCTAAGTAGCAAAA
Shewanella halifaxensis HAW-EB4	Shal_0486	-138	4.7	TTTTGTGACATAGGTAACACAA
Shewanella sediminis HAW-EB3	Ssed_3193	-105	4.3	ATTTGTGACCAAGTTCCCAAAC
Shewanella woodyi ATCC 51908	Swoo_0294	-78	3.9	AAACAGGACGTAGATCACACTT

Position: -66 Score: 4.1 Sequence: GAGTGTGACCTGATTCATACTT Locus tag: Shew185_3925
	Shew185_3925	-66	4.1	GAGTGTGACCTGATTCATACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Shewanella oneidensis MR-1	SO0432	-141	4.1	GAGTGTGACCTGATTCATACTT
Shewanella putrefaciens CN-32	Sputcn32_3409	-141	4.1	GAGTGTGACCTGATTCATACTT
Shewanella sp W3-18-1	Sputw3181_0534	-141	4.1	GAGTGTGACCTGATTCATACTT
Shewanella sp ANA-3	Shewana3_0433	-66	4.1	GAGTGTGACCTGATTCATACTT
Shewanella sp MR-4	Shewmr4_0437	-66	4.1	GAGTGTGACCTGATTCATACTT
Shewanella sp MR-7	Shewmr7_3592	-66	4.1	GAGTGTGACCTGATTCATACTT
Shewanella baltica OS155	Sbal_3905	-66	4.1	GAGTGTGACCTGATTCATACTT
Shewanella denitrificans OS217	Sden_3377	-139	4.1	CAGTGTGAGCCGATTCATACTT
		-67	3.9	AATTGTTAGCCTTATCACTATG
Shewanella frigidimarina NCIMB 400	Sfri_3771	-139	4.6	TAGTGTGAGCTGATTCATACTT
Shewanella amazonensis SB2B	Sama_0382	-138	4	GAGTGTGAGCTGATTCATACTT
Shewanella loihica PV-4	Shew_3424	-140	4.3	GAGTGTGATCTGATTCATACTT
Shewanella pealeana ATCC 700345	Spea_0425	-268	4	TTATATAATTTAGATCAAGTTT
		-160	4.8	AAGTGTGATCGGATTCATACTT
Shewanella halifaxensis HAW-EB4	Shal_0482	-247	3.7	TTATATAATTTAGATCAAGGTT
		-139	5	AAATGTGATCGGATTCATACTT
Shewanella piezotolerans WP3	swp_4740	-245	3.9	TTATGTGATTAATCTCAGTGTT
		-139	4.9	AAGTGTGATCTGATTCATACTT
Shewanella sediminis HAW-EB3	Ssed_0438	-141	4.4	GAGTGTGATCTGATTCAAACTT
Shewanella woodyi ATCC 51908	Swoo_0285	-139	4.4	GAGTGTGATCTGATTCAAACTT

Position: -315 Score: 3.9 Sequence: AAGTATGAATCAGGTCACACTC Position: 27 Score: 3.8 Sequence: ATTTTTGATATGGATGGCGTTT Locus tag: Shew185_3926
	Shew185_3926	-315	3.9	AAGTATGAATCAGGTCACACTC
		27	3.8	ATTTTTGATATGGATGGCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yniC
Ortholog function: 2-deoxyglucose-6-phosphate hydrolase YniC
Shewanella oneidensis MR-1	SO0431	-302	3.9	AAGTATGAATCAGGTCACACTC
		-118	3.8	TAACGAAATGCTTTTCACAGTA
Shewanella putrefaciens CN-32	Sputcn32_3410	-316	3.9	AAGTATGAATCAGGTCACACTC
Shewanella sp W3-18-1	Sputw3181_0533	-316	3.9	AAGTATGAATCAGGTCACACTC
Shewanella sp ANA-3	Shewana3_0432	-315	3.9	AAGTATGAATCAGGTCACACTC
Shewanella sp MR-4	Shewmr4_0436	-315	3.9	AAGTATGAATCAGGTCACACTC
Shewanella sp MR-7	Shewmr7_3593	-315	3.9	AAGTATGAATCAGGTCACACTC
Shewanella baltica OS155	Sbal_3906	-315	3.9	AAGTATGAATCAGGTCACACTC
Shewanella denitrificans OS217	Sden_3378	-316	4	AAGTATGAATCGGCTCACACTG
Shewanella frigidimarina NCIMB 400	Sfri_3772	-288	4.3	AAGTATGAATCAGCTCACACTA
Shewanella amazonensis SB2B	Sama_0381	-255	4	AAGTATGAATCAGCTCACACTC
Shewanella loihica PV-4	Shew_3425	-295	4.1	AAGTATGAATCAGATCACACTC
Shewanella pealeana ATCC 700345	Spea_0424	-286	4.3	AAGTATGAATCCGATCACACTT
		-178	4.1	AAACTTGATCTAAATTATATAA
Shewanella halifaxensis HAW-EB4	Shal_0481	-286	4.5	AAGTATGAATCCGATCACATTT
		-178	3.7	AACCTTGATCTAAATTATATAA
Shewanella piezotolerans WP3	swp_4741	-283	4.4	AAGTATGAATCAGATCACACTT
		-177	3.7	AACACTGAGATTAATCACATAA
		-101	3.7	TTTCGTAAAGCTAAACACAATA
Shewanella sediminis HAW-EB3	Ssed_0437	-296	4.2	AAGTTTGAATCAGATCACACTC
Shewanella woodyi ATCC 51908	Swoo_0284	-296	4.2	AAGTTTGAATCAGATCACACTC

Position: -111 Score: 4.7 Sequence: TATTGTGATCAGTATCAAACAC Locus tag: Shew185_3932
	Shew185_3932	-111	4.7	TATTGTGATCAGTATCAAACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Shewanella oneidensis MR-1	SO0426	-113	4.7	TATTGTGATCAGTATCAAACAC
Shewanella putrefaciens CN-32	Sputcn32_3415	-111	4.7	TATTGTGATCAGTATCAAACAC
Shewanella sp W3-18-1	Sputw3181_0528	-111	4.7	TATTGTGATCAGTATCAAACAC
Shewanella sp ANA-3	Shewana3_0428	-113	4.7	TATTGTGATCAGTATCAAACAC
Shewanella sp MR-4	Shewmr4_0430	-113	4.7	TATTGTGATCAGTATCAAACAC
Shewanella sp MR-7	Shewmr7_3597	-113	4.7	TATTGTGATCAGTATCAAACAC
Shewanella baltica OS155	Sbal_3911	-111	4.7	TATTGTGATCAGTATCAAACAC
Shewanella frigidimarina NCIMB 400	Sfri_3775	-168	5.1	TATTGTGATCGGTTTCAAACAA
Shewanella pealeana ATCC 700345	Spea_0421	-128	4.5	GATTGTGATCAGCATCAAACAA
Shewanella halifaxensis HAW-EB4	Shal_0478	-130	4.6	GATTGTGATCCGTATCAAACAA
Shewanella piezotolerans WP3	swp_4749	-113	4.5	GATTGTGATCAGTATCAAACAA

Position: -105 Score: 4.1 Sequence: TCAATTGATCTGGCTCACGTTT Locus tag: Shew185_3961
	Shew185_3961	-105	4.1	TCAATTGATCTGGCTCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdrC
Ortholog function: fumarate reductase cytochrome b subunit
Shewanella oneidensis MR-1	SO0397	-79	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella oneidensis MR-1	SO0397	-144	4	TTTTGTGATCATCTTCTAAGAG
		-79	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella putrefaciens CN-32	Sputcn32_3440	-67	4.1	ATTTGTGAGCGATATTAACTTT
Shewanella putrefaciens CN-32	Sputcn32_3440	-144	4.3	TTTTGTGATCTTCTTCTAAGAG
		-67	4.1	ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1	Sputw3181_0499	-67	4.1	ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1	Sputw3181_0499	-144	4.3	TTTTGTGATCTTCTTCTAAGAG
		-67	4.1	ATTTGTGAGCGATATTAACTTT
Shewanella sp ANA-3	Shewana3_0402	-77	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp ANA-3	Shewana3_0402	-144	4.2	TTTTGTGATCCTCTTCTAAGAG
		-77	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4	Shewmr4_0403	-77	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4	Shewmr4_0403	-144	4.2	TTTTGTGATCCTCTTCTAAGAG
		-77	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7	Shewmr7_3622	-76	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7	Shewmr7_3622	-144	4.2	TTTTGTGATCCTCTTCTAAGAG
		-76	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella baltica OS155	Sbal_3936	-105	4.1	TCAATTGATCTGGCTCACGTTT
Shewanella baltica OS155	Sbal_3936	-145	4.3	TTTTGTGATCTTCTTCTAAGAG
		-105	4.1	TCAATTGATCTGGCTCACGTTT
Shewanella amazonensis SB2B	Sama_3221	-144	4.1	GTTTGTGATCCGCTTCCAATAA
Shewanella loihica PV-4	Shew_0333	-98	4.4	TGTTTTGATCTATCTCACGGTT
Shewanella loihica PV-4	Shew_0333	-98	4.4	TGTTTTGATCTATCTCACGGTT
Shewanella pealeana ATCC 700345	Spea_0393	-138	4.7	ATTTGTGATCTTGATCTAATAG
		-106	4	AAGGGTGAGTTCCTTCACGAAA
		-94	4.1	TTTGTTGATCTATCTCACGGTT
Shewanella pealeana ATCC 700345	Spea_0393	-94	4.1	TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4	Shal_3898	-138	3.9	GTTTGTGATCTACGTCTAATAG
		-106	4.2	TGTAGTGACACTGATCACGAAA
		-94	4.1	TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4	Shal_3898	-94	4.1	TTTGTTGATCTATCTCACGGTT
Shewanella piezotolerans WP3	swp_0429	-106	3.8	TAGGGTGAGCAAAGTCACGATT
		-94	3.9	TTTGTTGATCTATCTCACTGTT
Shewanella piezotolerans WP3	swp_0429	-94	3.9	TTTGTTGATCTATCTCACTGTT
Shewanella sediminis HAW-EB3	Ssed_4115	-104	4.4	TGTTTTGATCTGCCTCACGGTT
		-74	3.9	ATATGTGAGCGACATTATGATT
Shewanella sediminis HAW-EB3	Ssed_4115	-104	4.4	TGTTTTGATCTGCCTCACGGTT
		-74	3.9	ATATGTGAGCGACATTATGATT
Shewanella woodyi ATCC 51908	Swoo_0508	-109	4.7	TGATTTGATCTGTCTCACAGTA
		-79	4	ATTTGTGAGCGACATTATCTAA
Shewanella woodyi ATCC 51908	Swoo_0508	-109	4.7	TGATTTGATCTGTCTCACAGTA
		-79	4	ATTTGTGAGCGACATTATCTAA

Position: -145 Score: 4.3 Sequence: TTTTGTGATCTTCTTCTAAGAG Locus tag: Shew185_3962
	Shew185_3962	-145	4.3	TTTTGTGATCTTCTTCTAAGAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdC1
Ortholog function: Fumarate reductase cytochrome b subunit
Shewanella oneidensis MR-1	SO0396	-144	4	TTTTGTGATCATCTTCTAAGAG
		-79	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella putrefaciens CN-32	Sputcn32_3441	-144	4.3	TTTTGTGATCTTCTTCTAAGAG
		-67	4.1	ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1	Sputw3181_0498	-144	4.3	TTTTGTGATCTTCTTCTAAGAG
		-67	4.1	ATTTGTGAGCGATATTAACTTT
Shewanella sp ANA-3	Shewana3_0401	-144	4.2	TTTTGTGATCCTCTTCTAAGAG
		-77	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4	Shewmr4_0402	-144	4.2	TTTTGTGATCCTCTTCTAAGAG
		-77	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7	Shewmr7_3623	-144	4.2	TTTTGTGATCCTCTTCTAAGAG
		-76	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella baltica OS155	Sbal_3937	-145	4.3	TTTTGTGATCTTCTTCTAAGAG
		-105	4.1	TCAATTGATCTGGCTCACGTTT
Shewanella frigidimarina NCIMB 400	Sfri_0456	-135	3.8	TTGTGTGACCCGCTTCTAACTC
		-103	3.8	ATAGGTGAACATTATCACGGTT
Shewanella frigidimarina NCIMB 400	Sfri_0456	-135	3.8	TTGTGTGACCCGCTTCTAACTC
		-103	3.8	ATAGGTGAACATTATCACGGTT
Shewanella amazonensis SB2B	Sama_3222	-144	4.1	GTTTGTGATCCGCTTCCAATAA
Shewanella pealeana ATCC 700345	Spea_0392	-138	4.7	ATTTGTGATCTTGATCTAATAG
		-106	4	AAGGGTGAGTTCCTTCACGAAA
		-94	4.1	TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4	Shal_3899	-138	3.9	GTTTGTGATCTACGTCTAATAG
		-106	4.2	TGTAGTGACACTGATCACGAAA
		-94	4.1	TTTGTTGATCTATCTCACGGTT
Shewanella piezotolerans WP3	swp_0428	-106	3.8	TAGGGTGAGCAAAGTCACGATT
		-94	3.9	TTTGTTGATCTATCTCACTGTT
Shewanella sediminis HAW-EB3	Ssed_4116	-126	4.5	GTTTGTGATCTGCTTCAAATAG
Shewanella woodyi ATCC 51908	Swoo_0507	-138	4.8	GTTTGTGATGTGGTTCAAAAAA

Position: -92 Score: 5.5 Sequence: AAGTGTGATGCGCTTCACATAT Position: -52 Score: 3.9 Sequence: AAGTGTTAACATGAGCACACTT Locus tag: Shew185_3977
	Shew185_3977	-92	5.5	AAGTGTGATGCGCTTCACATAT
		-52	3.9	AAGTGTTAACATGAGCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella oneidensis MR-1	SO4312	-91	5	AAGTGTGATGGACCTCTCATTT
Shewanella putrefaciens CN-32	Sputcn32_3586	-91	5.4	AAATGTGATGCAGATCTCATTT
		-51	3.8	AAGTGTTAACATAAGCACACTT
Shewanella sp W3-18-1	Sputw3181_3725	-91	5.4	AAATGTGATGCAGATCTCATTT
		-51	3.8	AAGTGTTAACATAAGCACACTT
Shewanella sp ANA-3	Shewana3_0387	-92	4.7	AAGTGTGACGAACTTCTCATTT
		-52	3.9	AAGTGTTAACATGAGCACACTT
Shewanella sp MR-4	Shewmr4_0389	-92	4.7	AAGTGTGACGAACTTCTCATTT
		-52	3.9	AAGTGTTAACATGAGCACACTT
Shewanella sp MR-7	Shewmr7_3637	-92	4.7	AAGTGTGACGAACTTCTCATTT
		-52	3.9	AAGTGTTAACATGAGCACACTT
Shewanella frigidimarina NCIMB 400	Sfri_0441	-129	3.8	AAATGCTACGATGATCACCATT
		-100	3.9	AAATGTGATCTTGATTGGCAAA
Shewanella amazonensis SB2B	Sama_3253	-90	5.4	AAATGTGATCTCTATCGCAAAT
Shewanella loihica PV-4	Shew_0319	-88	5.1	AAGTGTGATCCAGCTCTCAAAT
Shewanella pealeana ATCC 700345	Spea_0374	-87	5.3	AAGTGTGATCTTGATCGCATTT
Shewanella halifaxensis HAW-EB4	Shal_3916	-88	5.3	AAGCGTGATGTTGATCACATTT
Shewanella piezotolerans WP3	swp_0403	-106	5.5	AAATGTGATCGGAGTCACATTT
Shewanella sediminis HAW-EB3	Ssed_4132	-90	5.2	AAGTGTGATCTTGATCTCATTT
Shewanella woodyi ATCC 51908	Swoo_0484	-98	5	AAGTGTGATCTTGGTCTCATTT

Position: -172 Score: 4.2 Sequence: AAGTGTGCTCATGTTAACACTT Position: -132 Score: 5.1 Sequence: ATATGTGAAGCGCATCACACTT Locus tag: Shew185_3978
	Shew185_3978	-172	4.2	AAGTGTGCTCATGTTAACACTT
		-132	5.1	ATATGTGAAGCGCATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemC
Ortholog function: Porphobilinogen deaminase (EC 2.5.1.61)
Shewanella oneidensis MR-1	SO4313	-172	3.9	GATTGTGCTCATGTTAACACTT
		-132	4.5	AAATGAGAGGTCCATCACACTT
Shewanella putrefaciens CN-32	Sputcn32_3587	-173	4.1	AAGTGTGCTTATGTTAACACTT
		-133	5.2	AAATGAGATCTGCATCACATTT
Shewanella sp W3-18-1	Sputw3181_3726	-173	4.1	AAGTGTGCTTATGTTAACACTT
		-133	5.2	AAATGAGATCTGCATCACATTT
Shewanella sp ANA-3	Shewana3_0386	-172	4.2	AAGTGTGCTCATGTTAACACTT
		-132	4.3	AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-4	Shewmr4_0388	-172	4.2	AAGTGTGCTCATGTTAACACTT
		-132	4.3	AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-7	Shewmr7_3638	-172	4.2	AAGTGTGCTCATGTTAACACTT
		-132	4.3	AAATGAGAAGTTCGTCACACTT
Shewanella baltica OS155	Sbal_4000	-132	4.9	AAATGTGAAGTCCGTCACACTT
Shewanella denitrificans OS217	Sden_0388	-85	3.9	AAATCTGCTTTGCTTCAAACAT
Shewanella frigidimarina NCIMB 400	Sfri_0440	-167	4	AATGGTGATCATCGTAGCATTT
Shewanella amazonensis SB2B	Sama_3254	-89	5.1	ATTTGCGATAGAGATCACATTT
Shewanella loihica PV-4	Shew_0318	-119	4.7	ATTTGAGAGCTGGATCACACTT
Shewanella pealeana ATCC 700345	Spea_0373	-133	5	AAATGCGATCAAGATCACACTT
Shewanella halifaxensis HAW-EB4	Shal_3917	-133	5.1	AAATGTGATCAACATCACGCTT
Shewanella piezotolerans WP3	swp_0402	-40	4.3	AAATGTAATCCGTATCGCAACA
Shewanella sediminis HAW-EB3	Ssed_4133	-133	4.9	AAATGAGATCAAGATCACACTT
Shewanella woodyi ATCC 51908	Swoo_0483	-229	4.6	AAATGAGACCAAGATCACACTT

Position: -85 Score: 4.3 Sequence: TATAGTGATTTCAATCACAACC Locus tag: Shew185_4010
	Shew185_4010	-85	4.3	TATAGTGATTTCAATCACAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvC
Ortholog function: Ketol-acid reductoisomerase (EC 1.1.1.86)
Shewanella oneidensis MR-1	SO4349	-86	4	TATAGTGACTTCAATCACAACC
Shewanella putrefaciens CN-32	Sputcn32_3615	-86	4.3	TATAGTGATTTCAATCACAACC
Shewanella sp W3-18-1	Sputw3181_3755	-86	4.3	TATAGTGATTTCAATCACAACC
Shewanella sp ANA-3	Shewana3_0355	-86	4.3	TATAGTGATTTCAATCACAACC
Shewanella sp MR-4	Shewmr4_0361	-86	4.3	TATAGTGATTTCAATCACAACC
Shewanella sp MR-7	Shewmr7_3665	-86	4.3	TATAGTGATTTCAATCACAACC
Shewanella baltica OS155	Sbal_4032	-85	4.3	TATAGTGATTTCAATCACAACC
Shewanella frigidimarina NCIMB 400	Sfri_0421	-85	4.1	TATAGTGACTTCAATCACAACG
Shewanella amazonensis SB2B	Sama_3282	-88	4.4	TATAGTGAGTTCAATCACAATC
Shewanella loihica PV-4	Shew_0288	-126	3.7	CAATGTGACGTTTCGAATATAT
		-77	3.8	ATAGTTGATCTCATTCACAGCT
Shewanella piezotolerans WP3	swp_0358	-77	4.6	TATAGTGATCTCAATCACAGCT
Shewanella sediminis HAW-EB3	Ssed_4166	-78	4	TATAGTGATCTCAATCACTGCT
Shewanella woodyi ATCC 51908	Swoo_0441	-78	3.5	TATAGTGAATTCAATCACTGCT

Position: -96 Score: 4.1 Sequence: TTTTGTGCGCACCTTCATAAAT Locus tag: Shew185_4042
	Shew185_4042	-96	4.1	TTTTGTGCGCACCTTCATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbA
Ortholog function: nitrosative stress induced protein
Shewanella oneidensis MR-1	SO0324	-97	4.1	TTTTGTGCGCACCTTCATAAAT
Shewanella putrefaciens CN-32	Sputcn32_3663	-96	4.1	TTTTGTGCGCACCTTCATAAAT
Shewanella sp W3-18-1	Sputw3181_3804	-96	4.1	TTTTGTGCGCACCTTCATAAAT
Shewanella sp ANA-3	Shewana3_3845	-97	4.1	TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-4	Shewmr4_3649	-97	4.1	TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-7	Shewmr7_0295	-97	4.1	TTTTGTGCGCATCTTCATAAAT
Shewanella baltica OS155	Sbal_4067	-96	4.1	TTTTGTGCGCACCTTCATAAAT
Shewanella frigidimarina NCIMB 400	Sfri_0404	-142	4	TTTTGCGATCCCAACCTCAAAA
Shewanella amazonensis SB2B	Sama_3326	-94	3.6	TTTTGTGCGCATCTTCATGCTT
Shewanella loihica PV-4	Shew_0259	-96	4.1	TTTTGTGCGCATCTTCATAATT
Shewanella pealeana ATCC 700345	Spea_0303	-96	3.9	TTTTGTGCACATCTTCAAAGTT
Shewanella halifaxensis HAW-EB4	Shal_3986	-96	4	TTTTGTGCACATCTTCAAACTT
Shewanella piezotolerans WP3	swp_2171	-96	4	TTTTGTGCGCACCTTCAAACTT
Shewanella sediminis HAW-EB3	Ssed_4199	-187	3.9	TTTTGTGCACATCTTCATACTT
Shewanella woodyi ATCC 51908	Swoo_0395	-82	3.4	TTCTGTGCGCACCTTCATAGAT

Position: -140 Score: 3.7 Sequence: CATTGCGATTAGTTGCATATTA Locus tag: Shew185_4096
	Shew185_4096	-140	3.7	CATTGCGATTAGTTGCATATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppc
Ortholog function: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Shewanella sp ANA-3	Shewana3_3906	-233	3.7	AATATTGCGTTAGCTCGCATTT
		-189	3.7	TATCGCGATTAGTTGCATATAA
Shewanella sp MR-4	Shewmr4_3710	-228	3.7	AATATTGCGTTAGCTCGCATTT
		-184	4.3	TATCGTGATTAGTTGCATATAA
Shewanella sp MR-7	Shewmr7_0235	-228	3.7	AATATTGCGTTAGCTCGCATTT
		-184	4.3	TATCGTGATTAGTTGCATATAA
Shewanella loihica PV-4	Shew_0200	-107	4.3	CAAGGTGATATAGAACACATAA
Shewanella halifaxensis HAW-EB4	Shal_4095	-106	5	AAAAGTGATATAGAGCACATTA
Shewanella piezotolerans WP3	swp_2053	-106	4.4	TAAAGTGAGGTAGAGCACATTC
Shewanella sediminis HAW-EB3	Ssed_4278	-111	3.9	CCGAGTGATGTAGAGCACATAA
Shewanella woodyi ATCC 51908	Swoo_0327	-111	4.7	AGAAGTGATGTAGAACACATAA

Position: -187 Score: 4 Sequence: TAGTTTGAACTAGATCATCAAA Locus tag: Shew185_4100
	Shew185_4100	-187	4	TAGTTTGAACTAGATCATCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4503
Ortholog function: formate dehydrogenase chain D (EC 1.2.1.2)
Shewanella putrefaciens CN-32	Sputcn32_0343	-187	4	AAGTTTGAAGTAGATCATCAAA
		-91	4.1	AATTGCGATAGATCACGCATTT
Shewanella sp W3-18-1	Sputw3181_3865	-131	4	AAGTTTGAAGTAGATCATCAAA
		-35	4.1	AATTGCGATAGATCACGCATTT
Shewanella sp ANA-3	Shewana3_3910	-187	4	TTGTTTGAGGTGGATCATCAAA
		-91	4	AATTGCGACGGATCACGCATTT
Shewanella sp MR-4	Shewmr4_3714	-187	4	TTGTTTGAGGTGGATCATCAAA
		-91	4	AATTGCGACGGATCACGCATTT
Shewanella sp MR-7	Shewmr7_3785	-187	4	TTGTTTGAGGTGGATCATCAAA
		-91	4	AATTGCGACGGATCACGCATTT
Shewanella baltica OS155	Sbal_4130	-187	4	TAGTTTGAACTAGATCATCAAA
Shewanella frigidimarina NCIMB 400	Sfri_0051	-139	3.7	AGATTTGCGCCAGATCACGCTT
Shewanella amazonensis SB2B	Sama_3619	-186	3.9	AAGTTTGAAGTGGATCATCAAA
Shewanella loihica PV-4	Shew_0053	-190	4	TAGTTTGAACTGGATCATCAAA
Shewanella pealeana ATCC 700345	Spea_4143	-183	4.2	TAGTTTGAACTAGATCAACTAT
		-87	3.9	AAGTGTGATCGACCACTAACTT
		-20	3.9	TTGCGTGACAAGGATAAAAAAT
Shewanella halifaxensis HAW-EB4	Shal_0099	-181	4.2	TAGTTTGAACTAGATCAACTAT
		-85	4.5	AAATGTGATCTACTACTAATTT
Shewanella piezotolerans WP3	swp_5036	-86	4.2	AAGTGTGATCTGCAGCTAACTT
		-25	4	AAAGGTAATTGAAATCTCATAA
Shewanella sediminis HAW-EB3	Ssed_4427	-153	3.9	TAACTTGAGCTGGATCATCAAT
		-59	3.8	TTAAATGAGAGAGATCACGCAT
Shewanella woodyi ATCC 51908	Swoo_4819	-163	4.3	TTTTTTGAGCTAGATCATCAAA

Position: -136 Score: 4.2 Sequence: TTTGATGATCTAGTTCAAACTA Locus tag: Shew185_4101
	Shew185_4101	-136	4.2	TTTGATGATCTAGTTCAAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4504
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO4504	-130	4	TTTGATGATCCACTTCAAACTA
Shewanella putrefaciens CN-32	Sputcn32_0342	-140	4.1	TTTGATGATCTACTTCAAACTT
Shewanella sp W3-18-1	Sputw3181_3866	-140	4.1	TTTGATGATCTACTTCAAACTT
Shewanella sp ANA-3	Shewana3_3911	-225	3.8	ATGCGTGATCCGTCGCAATTAT
		-131	3.9	TTTGATGATCCACCTCAAACAA
Shewanella sp MR-4	Shewmr4_3715	-225	3.8	ATGCGTGATCCGTCGCAATTAT
		-131	3.9	TTTGATGATCCACCTCAAACAA
Shewanella sp MR-7	Shewmr7_3786	-225	3.8	ATGCGTGATCCGTCGCAATTAT
		-131	3.9	TTTGATGATCCACCTCAAACAA
Shewanella baltica OS155	Sbal_4131	-136	4.2	TTTGATGATCTAGTTCAAACTA
Shewanella frigidimarina NCIMB 400	Sfri_0052	-125	4.2	TTTCGGGATCTAGTTCAAAGTT
Shewanella amazonensis SB2B	Sama_3618	-113	4	TTTGATGATCCACTTCAAACTT
Shewanella loihica PV-4	Shew_0054	-127	4.1	TTTGATGATCCAGTTCAAACTA
Shewanella pealeana ATCC 700345	Spea_4142	-123	4.2	ATAGTTGATCTAGTTCAAACTA
Shewanella halifaxensis HAW-EB4	Shal_0100	-124	4.2	ATAGTTGATCTAGTTCAAACTA
Shewanella piezotolerans WP3	swp_5034	-148	4	TTATGAGATTTCAATTACCTTT
		-87	3.8	AAGTTAGCTGCAGATCACACTT
Shewanella sediminis HAW-EB3	Ssed_4426	-217	4.1	ATGCGTGATCTCTCTCATTTAA
		-123	3.9	ATTGATGATCCAGCTCAAGTTA
Shewanella woodyi ATCC 51908	Swoo_4818	-148	4.2	TTTGATGATCTAGCTCAAAAAA

Position: -229 Score: 4.1 Sequence: TTTTGTTAAGCAGATCATGTTT Locus tag: Shew185_4117
	Shew185_4117	-229	4.1	TTTTGTTAAGCAGATCATGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4519
Ortholog function: sodium-dependent transporter
Shewanella oneidensis MR-1	SO4519	-214	4.1	TTTTGTTAAGCAGATCATGTTT
Shewanella putrefaciens CN-32	Sputcn32_3507	-224	4.1	TTTTGTTAAGCAGATCATGTTT
Shewanella sp W3-18-1	Sputw3181_0399	-278	4.1	TTTTGTTAAGCAGATCATGTTT
Shewanella sp ANA-3	Shewana3_3925	-236	4.1	TTTTGTTAAGCAGATCATGTTT
Shewanella sp MR-4	Shewmr4_3729	-236	4.1	TTTTGTTAAGCAGATCATGTTT
Shewanella sp MR-7	Shewmr7_3800	-236	4.1	TTTTGTTAAGCAGATCATGTTT
Shewanella baltica OS155	Sbal_0220	-228	4.1	TTTTGTTAAGCAGATCATGTTT

Position: -172 Score: 4.4 Sequence: AAACATGATCTGCTTAACAAAA Locus tag: Shew185_4118
	Shew185_4118	-172	4.4	AAACATGATCTGCTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4520
Ortholog function: Oxygen-independent coproporphyrinogen III oxidase, putative
Shewanella oneidensis MR-1	SO4520	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella putrefaciens CN-32	Sputcn32_3506	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella sp W3-18-1	Sputw3181_0400	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella sp ANA-3	Shewana3_3926	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella sp MR-4	Shewmr4_3730	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella sp MR-7	Shewmr7_3801	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella baltica OS155	Sbal_0219	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella frigidimarina NCIMB 400	Sfri_0076	-182	4.4	AAACATGATCTGCTTAACAAAT
Shewanella amazonensis SB2B	Sama_3604	-171	3.9	AAATATGCGCTGCTTAACAAAA
Shewanella loihica PV-4	Shew_0073	-182	4.1	AAACATGACATGCTTAACAATT
Shewanella pealeana ATCC 700345	Spea_4126	-164	4.4	AAGTATGATCCGCTTAACAAAA
Shewanella halifaxensis HAW-EB4	Shal_0116	-164	4.2	AAGTATGACCCGCTTAACAAAA
Shewanella piezotolerans WP3	swp_5018	-166	4.2	AAGTATGACTTACTTAACAAAA
Shewanella sediminis HAW-EB3	Ssed_4414	-203	4	AAACATGACTTGCTTAACAAAA
Shewanella woodyi ATCC 51908	Swoo_4806	-184	4	AAACATGACTCGCTTAACAAAA

Position: -342 Score: 4.3 Sequence: TAATGTGAAACATATCTCAACT Position: -258 Score: 4 Sequence: AAATGTGATAAAGATAAATTTG Position: -147 Score: 3.6 Sequence: TAATGAGATCGAATTCTTAACT Position: -97 Score: 5.2 Sequence: AAATGTGATCGTGTTCAAAAAA Locus tag: Shew185_4154
	Shew185_4154	-342	4.3	TAATGTGAAACATATCTCAACT
		-258	4	AAATGTGATAAAGATAAATTTG
		-147	3.6	TAATGAGATCGAATTCTTAACT
		-97	5.2	AAATGTGATCGTGTTCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0312
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32	Sputcn32_0312	-99	4.3	AAGTGTGATGCTGGTCAATAAA
Shewanella sp W3-18-1	Sputw3181_3896	-99	4.2	AAGTGTGATACTGGTCAATAAA
Shewanella sp ANA-3	Shewana3_3963	-99	5.2	AAATGTGATCTATGTCAAAAAA
Shewanella sp MR-4	Shewmr4_3765	-99	5.2	AAATGTGATCTATGTCAAAAAA
Shewanella sp MR-7	Shewmr7_3838	-99	5.2	AAATGTGATCTGTGTCAAAAAA
Shewanella baltica OS155	Sbal_0180	-97	5.2	AAATGTGATCGTGTTCAAAAAA
Shewanella frigidimarina NCIMB 400	Sfri_0616	-115	3.7	TTAATTGATTACGATCAATTTA

Position: -317 Score: 4.4 Sequence: ATAAGTGATCTTGATCAATATT Locus tag: Shew185_4180
	Shew185_4180	-317	4.4	ATAAGTGATCTTGATCAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4606
Ortholog function: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Shewanella oneidensis MR-1	SO4606	-317	4.2	AGAAGTGATCTTGATCAATTTT
Shewanella putrefaciens CN-32	Sputcn32_3782	-309	4.4	ATAAGTGATCTTGATCAATATT
Shewanella sp W3-18-1	Sputw3181_0133	-309	4.4	ATAAGTGATCTTGATCAATATT
Shewanella sp ANA-3	Shewana3_3991	-318	4.2	AGAAGTGATCTTGATCAATTTT
Shewanella sp MR-4	Shewmr4_3791	-318	4.2	AGAAGTGATCTTGATCAATTTT
Shewanella sp MR-7	Shewmr7_3864	-317	4.2	AGAAGTGATCTTGATCAATTTT
Shewanella baltica OS155	Sbal_0154	-317	4.4	ATAAGTGATCTTGATCAATATT
Shewanella denitrificans OS217	Sden_3517	-316	4.4	AAAAGTGATCTTGATCAATATT
Shewanella frigidimarina NCIMB 400	Sfri_0258	-321	3.9	CAAAGTGATCTTGATCAATGTT
Shewanella amazonensis SB2B	Sama_3483	-318	4.4	TAAAGTGATCTTGATCAATATT
Shewanella loihica PV-4	Shew_0125	-321	4.4	AAAAGTGATCTTGATCAATATT
		-264	4	TTATTTGTTATATCGCACAATT

Position: -129 Score: 4 Sequence: AATCGTGATCGCTATGGCAAAA Locus tag: Shew185_4192
	Shew185_4192	-129	4	AATCGTGATCGCTATGGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhgI
Ortholog function: NfuA Fe-S protein maturation
Shewanella oneidensis MR-1	SO4619	-129	3.9	AATCGTGATCACTATGGCAAAA
Shewanella putrefaciens CN-32	Sputcn32_3794	-129	4.2	AATCGTGATCACTTTTGCAAAA
Shewanella sp W3-18-1	Sputw3181_0119	-129	4.2	AATCGTGATCACTTTTGCAAAA
Shewanella sp ANA-3	Shewana3_4003	-128	4.1	AAGCGTGATGGATTTTGCAAAA
Shewanella sp MR-4	Shewmr4_3804	-128	4.1	AAGCGTGATGGATTTTGCAAAA
Shewanella sp MR-7	Shewmr7_3880	-128	4.1	AAGCGTGATGGATTTTGCAAAA
Shewanella baltica OS155	Sbal_0142	-129	4	AATCGTGATCGCTATGGCAAAA
Shewanella piezotolerans WP3	swp_4841	-131	3.8	AAATGTGATCAGAACTGCGTTA

Position: -136 Score: 4.3 Sequence: AAATGCGAACGAGTTCACTTTT Locus tag: Shew185_4256
	Shew185_4256	-136	4.3	AAATGCGAACGAGTTCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: prlC
Ortholog function: Oligopeptidase A (EC 3.4.24.70)
Shewanella oneidensis MR-1	SO4699	-136	4.2	AATTGAGAACTGGCTCACTTTT
Shewanella putrefaciens CN-32	Sputcn32_0087	-178	4.3	AATTGAGAACTAGTTCACTTTT
Shewanella sp W3-18-1	Sputw3181_3978	-178	4.3	AATTGAGAACTAGTTCACTTTT
Shewanella sp ANA-3	Shewana3_4051	-136	4.6	AATTGTGAACTGGTTCGCTTTT
Shewanella sp MR-4	Shewmr4_3842	-136	4.3	AATTGTGAACTGAGTCGCTTTT
Shewanella sp MR-7	Shewmr7_3935	-136	4.3	AATTGTGAACTGAGTCGCTTTT
Shewanella baltica OS155	Sbal_0124	-136	4.3	AAATGCGAACGAGTTCACTTTT
Shewanella frigidimarina NCIMB 400	Sfri_3874	-226	4	AATTGGGATCTTAGTCACTCTA
Shewanella loihica PV-4	Shew_3657	-247	3.8	ATTTGCGATCCGCTTGGCAATA
Shewanella pealeana ATCC 700345	Spea_4065	-143	3.9	AAACTTGATTAAGATCGCGGAT
Shewanella halifaxensis HAW-EB4	Shal_0193	-192	4.4	ATTTGCGACGTGGTTTACAATA
		-142	4.2	AAATTTGATCTAGATCCTAGAT
Shewanella piezotolerans WP3	swp_4926	-311	3.7	ATTTGCGAGGCGCTTTGCAATA
		-261	3.6	AAAATTGACTTTAGTCAAAGAT
Shewanella sediminis HAW-EB3	Ssed_0145	-210	4.1	ATTTGAGAAGTAATTCTCAATA
Shewanella woodyi ATCC 51908	Swoo_0124	-172	4.2	TTTTTTGAGCTGGGTCAAAGTA

Position: -154 Score: 4.6 Sequence: AAAAGTGAACTCGTTCGCATTT Position: -104 Score: 3.5 Sequence: TATTGTCGGCTTGATCGCAAAT Locus tag: Shew185_4257
	Shew185_4257	-154	4.6	AAAAGTGAACTCGTTCGCATTT
		-104	3.5	TATTGTCGGCTTGATCGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4700
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO4700	-154	4.5	AAAAGTGAGCCAGTTCTCAATT
Shewanella putrefaciens CN-32	Sputcn32_0086	-153	4.5	AAAAGTGAACTAGTTCTCAATT
Shewanella sp W3-18-1	Sputw3181_3979	-153	4.5	AAAAGTGAACTAGTTCTCAATT
Shewanella sp ANA-3	Shewana3_4052	-154	4.3	AAAAGCGAACCAGTTCACAATT
Shewanella sp MR-4	Shewmr4_3843	-95	4.4	AAAAGCGACTCAGTTCACAATT
Shewanella sp MR-7	Shewmr7_3936	-95	4.4	AAAAGCGACTCAGTTCACAATT
Shewanella baltica OS155	Sbal_0123	-154	4.6	AAAAGTGAACTCGTTCGCATTT
Shewanella frigidimarina NCIMB 400	Sfri_3875	-148	4	TAGAGTGACTAAGATCCCAATT
Shewanella loihica PV-4	Shew_3658	-101	3.6	TATTGCCAAGCGGATCGCAAAT
Shewanella halifaxensis HAW-EB4	Shal_0192	-105	4.2	TATTGTAAACCACGTCGCAAAT
Shewanella piezotolerans WP3	swp_4927	-104	3.7	TATTGCAAAGCGCCTCGCAAAT
Shewanella sediminis HAW-EB3	Ssed_0144	-115	4.2	TATTGAGAATTACTTCTCAAAT
Shewanella woodyi ATCC 51908	Swoo_0123	-153	4.3	TACTTTGACCCAGCTCAAAAAA
		-78	3.9	AAGCGTTATCATTTACACATTA

Position: -95 Score: 4.6 Sequence: TAATGTGATCGGAGTAATATTT Locus tag: Shew185_4346
	Shew185_4346	-95	4.6	TAATGTGATCGGAGTAATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: engB
Ortholog function: GTP-binding protein EngB
Shewanella oneidensis MR-1	SO4667	-96	4.7	TAATGTGATCGGGGTAATATTT
Shewanella putrefaciens CN-32	Sputcn32_3907	-96	4.6	TAATGTGATCGGAGTAATATTT
Shewanella sp W3-18-1	Sputw3181_0044	-96	4.6	TAATGTGATCGGAGTAATATTT
Shewanella sp ANA-3	Shewana3_4110	-96	4.7	TAATGTGATCGGGGTAATATTT
Shewanella sp MR-4	Shewmr4_3906	-96	4.7	TAATGTGATCGGGGTAATATTT
Shewanella sp MR-7	Shewmr7_3998	-96	4.7	TAATGTGATCGGGGTAATATTT
Shewanella baltica OS155	Sbal_0052	-95	4.6	TAATGTGATCGGAGTAATATTT
Shewanella denitrificans OS217	Sden_3621	-182	3.8	TATTATGCTCGAAATAATATTT
Shewanella frigidimarina NCIMB 400	Sfri_3944	-104	4.7	TAATGTGATCAGGCTAATATTT
Shewanella amazonensis SB2B	Sama_0092	-96	4.1	ATATGTGATCGGGGCAATATTT
Shewanella loihica PV-4	Shew_3715	-95	4.7	TTATGTGATCGGGGTAATATTT
Shewanella pealeana ATCC 700345	Spea_0101	-96	4.7	TTATGTGATCGGGGTAATATTT
Shewanella halifaxensis HAW-EB4	Shal_4221	-96	4.7	TTATGTGATCGGGGTAATATTT
Shewanella piezotolerans WP3	swp_5074a	-96	4.7	TTATGTGATCGGGGTAATATTT
Shewanella sediminis HAW-EB3	Ssed_0095	-95	4.7	TTATGTGATCGAGGTAATATTT
Shewanella woodyi ATCC 51908	Swoo_0058	-110	4.8	TATTGTGATCGAGGTAATATTT

Position: -95 Score: 4.3 Sequence: AAATATTACTCCGATCACATTA Locus tag: Shew185_4347
	Shew185_4347	-95	4.3	AAATATTACTCCGATCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytcB
Ortholog function: Cytochrome c4
Shewanella oneidensis MR-1	SO4666	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella oneidensis MR-1	SO4666	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella putrefaciens CN-32	Sputcn32_3908	-95	4.3	AAATATTACTCCGATCACATTA
Shewanella putrefaciens CN-32	Sputcn32_3908	-95	4.3	AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1	Sputw3181_0043	-95	4.3	AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1	Sputw3181_0043	-95	4.3	AAATATTACTCCGATCACATTA
Shewanella sp ANA-3	Shewana3_4111	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella sp ANA-3	Shewana3_4111	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella sp MR-4	Shewmr4_3907	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella sp MR-4	Shewmr4_3907	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella sp MR-7	Shewmr7_3999	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella sp MR-7	Shewmr7_3999	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella baltica OS155	Sbal_0051	-95	4.3	AAATATTACTCCGATCACATTA
Shewanella baltica OS155	Sbal_0051	-95	4.3	AAATATTACTCCGATCACATTA
Shewanella denitrificans OS217	Sden_3622	-94	3.7	AAATATTATTTCGAGCATAATA
Shewanella denitrificans OS217	Sden_3622	-94	3.7	AAATATTATTTCGAGCATAATA
Shewanella frigidimarina NCIMB 400	Sfri_3945	-181	4.3	AAATATTAGCCTGATCACATTA
Shewanella frigidimarina NCIMB 400	Sfri_3945	-181	4.3	AAATATTAGCCTGATCACATTA
Shewanella amazonensis SB2B	Sama_0091	-95	3.7	AAATATTGCCCCGATCACATAT
Shewanella loihica PV-4	Shew_3716	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella loihica PV-4	Shew_3716	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345	Spea_0100	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345	Spea_0100	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4	Shal_4222	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4	Shal_4222	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3	swp_5075	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3	swp_5075	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella sediminis HAW-EB3	Ssed_0094	-96	4.5	AAATATTACCTCGATCACATAA
Shewanella sediminis HAW-EB3	Ssed_0094	-96	4.5	AAATATTACCTCGATCACATAA
Shewanella woodyi ATCC 51908	Swoo_0057	-157	4.2	AAATATGATGTTTTGCACTTTA
		-96	4.4	AAATATTACCTCGATCACAATA
Shewanella woodyi ATCC 51908	Swoo_0057	-157	4.2	AAATATGATGTTTTGCACTTTA
		-96	4.4	AAATATTACCTCGATCACAATA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Crp regulog to Shewanella baltica OS185

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --