Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Thermotoga naphthophila RKU-10

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AraR Arabinose Arabinose utilization 5 6
TF ArgR Arginine Arginine biosynthesis 2 2
TF BglR Cellobiose Beta-glucosides utilization 1 1
TF CelR Cellobiose Cellobiose utilization 7 5
TF ChiR Chitobiose Chitobiose utilization 2 1
TF FruR Fructose-1-phosphate Fructose utilization 1 1
TF Fur Iron ion, (Fe2+) Iron homeostasis 5 3
TF GalR Galactose Galactosides utilization 2 2
TF GloR Fucose-glucose oligosaccharide utilization 3 2
TF GluR Glucose Glucose utilization; Trehalose utilization 2 2
TF HcpR Nitric oxide Nitrosative stress response 2 2
TF HrcA Heat shock Heat shock response 6 5
TF IolR Inositol utilization 1 1
TF KdgR 2-keto-3-deoxygluconate Glucuronate utilization 6 6
TF ManR Mannose Mannan and beta-mannosides utilization 1 1
TF NiaR Niacin NAD biosynthesis 2 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 4 8
TF PhoB Inorganic phosphate Phosphate metabolism 1 1
TF PuuR Putrescine Spermidine biosynthesis 2 2
TF RbsR Ribose Ribose utilization 1 2
TF Rex NADH Energy metabolism 14 14
TF Rex1 NADH Energy metabolism 2 1
TF RhaR Rhamnose Rhamnose utilization; Rhamnose oligosaccharides utilization 3 3
TF TM0766 Hypothetical ABC transporter 1 1
TF TM1030 Multidrug resistance 1 1
TF TreR Trehalose Trehalose utilization 2 2
TF UctR Sugar utilization 1 1
TF UgpR Possibly alpha-mannosides utilization 1 1
TF UgtR Sugar utilization 1 1
TF UxaR Galacturonate utilization; Pectin utilization 3 3
TF XylR Xylose; Glucose Xylose utilization 7 7
TF ZnuR Zinc homeostasis 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 1 1
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 3 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA L10_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 1 1
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