Regulon of RhaR in Thermotoga naphthophila RKU-10
| Regulator type: | Transcription factor |
| TF locus tag: | Tnap_1698 |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | Rhamnose utilization; Rhamnose oligosaccharides utilization |
| Effector: | Rhamnose |
| Regulog: | RhaR - Thermotogales |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By TF family - DeoR
- By effector - Rhamnose
- By pathway - Rhamnose utilization
- By pathway - Rhamnose oligosaccharides utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -42
Score: 5.7 Sequence: ATTAGATAAATTTATGATAA
Locus tag: Tnap_1699
Name: Tnap_1699 Funciton: predicted rhamnose ABC transporter, ATP-binding protein
Locus tag: Tnap_1700
Name: Tnap_1700 Funciton: predicted rhamnose ABC transporter, permease protein
Locus tag: Tnap_1701
Name: Tnap_1701 Funciton: predicted rhamnose ABC transporter, permease protein
Locus tag: Tnap_1702
Name: Tnap_1702 Funciton: predicted rhamnose ABC transporter, solute-binding protein
Locus tag: Tnap_1703
Name: gusB Funciton: putative beta-glucuronidase |
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Tnap_1699
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predicted rhamnose ABC transporter, ATP-binding protein
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Tnap_1700
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predicted rhamnose ABC transporter, permease protein
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Tnap_1701
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predicted rhamnose ABC transporter, permease protein
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Tnap_1702
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predicted rhamnose ABC transporter, solute-binding protein
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gusB
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putative beta-glucuronidase
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Position: -57
Score: 6.7 Sequence: TTGTGATTAATTTATGATAA
Locus tag: Tnap_1697
Name: rhaM2 Funciton: L-rhamnose mutarotase, alternative
Locus tag: Tnap_1696
Name: rhaA Funciton: Alternative L-rhamnose isomerase (EC 5.3.1.14)
Locus tag: Tnap_1695
Name: rhaD Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
Locus tag: Tnap_1694
Name: rhaB Funciton: Rhamnulokinase (EC 2.7.1.5)
Locus tag: Tnap_1693
Name: rhaC Funciton: glycoside hydrolase family 2 sugar binding |
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rhaM2
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L-rhamnose mutarotase, alternative
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rhaA
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Alternative L-rhamnose isomerase (EC 5.3.1.14)
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rhaD
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Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
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rhaB
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Rhamnulokinase (EC 2.7.1.5)
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rhaC
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glycoside hydrolase family 2 sugar binding
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Position: -72
Score: 4.4 Sequence: TTATCATAAATTAATCACAA
Locus tag: Tnap_1698
Name: rhaR Funciton: Predicted regulator of rhamnose utilization, DeoR family |
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rhaR
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Predicted regulator of rhamnose utilization, DeoR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |