Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Rex in Thermotoga naphthophila RKU-10

Properties
Regulator type: Transcription factor
TF locus tag: Tnap_0799
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Regulog: Rex - Thermotogales
Statistics of regulated genes:
- Genes 30
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 114 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -63
Score: 4.7
Sequence: ATGTTATCATTTTCACAA
Locus tag: Tnap_1770
Name: TM0983
Funciton: conserved hypothetical protein, SirA family
Tnap_1770
TM0983
conserved hypothetical protein, SirA family
Position: -51
Score: 5
Sequence: TaGTGAAAAaTaTaACgt
Locus tag: Tnap_1390
Name: TM1420
Funciton: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
Locus tag: Tnap_1389
Name: TM1421
Funciton: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
Tnap_1390
TM1420
Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
Tnap_1389
TM1421
Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
Position: -177
Score: 4.9
Sequence: GAGTAAAATATTTCACAA
Locus tag: Tnap_1222
Name: TM1586
Funciton: Putative oxidoreductase, COG0778
Locus tag: Tnap_1223
Name: gckA
Funciton: D-glycerate 2-kinase (EC 2.7.1.-), GK-II family
Tnap_1222
TM1586
Putative oxidoreductase, COG0778
Tnap_1223
gckA
D-glycerate 2-kinase (EC 2.7.1.-), GK-II family
Position: -47
Score: 5.1
Sequence: TAGTTAAAAAAATAACAA
Locus tag: Tnap_1403
Name: sat
Funciton: Serine aminotransferase (EC 2.6.5.1)
Locus tag: Tnap_1402
Name: hpr
Funciton: Hydroxypyruvate reductase (EC 1.1.1.81)
Tnap_1403
sat
Serine aminotransferase (EC 2.6.5.1)
Tnap_1402
hpr
Hydroxypyruvate reductase (EC 1.1.1.81)
Position: -100
Score: 5
Sequence: GTGAGAAAATTTTCACAA
Position: -76
Score: 4.7
Sequence: TTGTTATGAAATTCACAA
Locus tag: Tnap_0992
Name: adhA
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent
Tnap_0992
adhA
Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent
Position: -54
Score: 5.3
Sequence: TTGAGAAATTTATCACAA
Locus tag: Tnap_0831
Name: hycD
Funciton: NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2)
Tnap_0831
hycD
NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2)
Position: -40
Score: 4.9
Sequence: ATGATAAAATTATCACAA
Locus tag: Tnap_1013
Name: cas6
Funciton: CRISPR/Cas system-associated RAMP superfamily protein Cas6
Locus tag: Tnap_1014
Name: csx1
Funciton: CRISPR/Cas system-associated protein Csx1
Locus tag: Tnap_1015
Name: cas10
Funciton: CRISPR/Cas system-associated protein Cas10
Locus tag: Tnap_1016
Name: csm2
Funciton: CRISPR/Cas system-associated protein Csm2
Locus tag: Tnap_1017
Name: csm3
Funciton: CRISPR/Cas system-associated RAMP superfamily protein Csm3
Locus tag: Tnap_1018
Name: csm4
Funciton: CRISPR/Cas system-associated RAMP superfamily protein Csm4
Locus tag: Tnap_1019
Name: csm5
Funciton: CRISPR/Cas system-associated RAMP superfamily protein Csm5
Locus tag: Tnap_1020
Name: TM1806
Funciton: hypothetical protein
Tnap_1013
cas6
CRISPR/Cas system-associated RAMP superfamily protein Cas6
Tnap_1014
csx1
CRISPR/Cas system-associated protein Csx1
Tnap_1015
cas10
CRISPR/Cas system-associated protein Cas10
Tnap_1016
csm2
CRISPR/Cas system-associated protein Csm2
Tnap_1017
csm3
CRISPR/Cas system-associated RAMP superfamily protein Csm3
Tnap_1018
csm4
CRISPR/Cas system-associated RAMP superfamily protein Csm4
Tnap_1019
csm5
CRISPR/Cas system-associated RAMP superfamily protein Csm5
Tnap_1020
TM1806
hypothetical protein
Position: -32
Score: 4.8
Sequence: TCGTGAAAAAATTCTCTT
Locus tag: Tnap_0182
Name: noxE
Funciton: NADH oxidase (EC 1.6.99.3)
Tnap_0182
noxE
NADH oxidase (EC 1.6.99.3)
Position: -104
Score: 5.1
Sequence: TAGTTATTTTTTTCACGA
Locus tag: Tnap_0482
Name: dnaX
Funciton: DNA polymerase III subunits gamma and tau
Locus tag: Tnap_0483
Name: TM0687
Funciton: conserved probable DNA binding protein, similar to YbaB family
Locus tag: Tnap_0484
Name: gap
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: Tnap_0485
Name: pgk
Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
Locus tag: Tnap_0486
Name: tpi
Funciton: Triosephosphate isomerase (EC 5.3.1.1)
Tnap_0482
dnaX
DNA polymerase III subunits gamma and tau
Tnap_0483
TM0687
conserved probable DNA binding protein, similar to YbaB family
Tnap_0484
gap
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Tnap_0485
pgk
Phosphoglycerate kinase (EC 2.7.2.3)
Tnap_0486
tpi
Triosephosphate isomerase (EC 5.3.1.1)
Position: -30
Score: 5.3
Sequence: TTGTGAAATTTTTGACGA
Locus tag: Tnap_0857
Name: hycE
Funciton: NAD-reducing Fe-hydrogenase, subunit HycE (EC 1.12.7.2)
Locus tag: Tnap_0858
Name: hycF
Funciton: NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2)
Tnap_0857
hycE
NAD-reducing Fe-hydrogenase, subunit HycE (EC 1.12.7.2)
Tnap_0858
hycF
NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2)
Position: -69
Score: 4.3
Sequence: ATGTGAAAAAAATATCAG
Position: -44
Score: 5
Sequence: TTGTGAAAAAATTCCCGA
Locus tag: Tnap_0643
Name: hycA
Funciton: NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
Locus tag: Tnap_0642
Name: hycB
Funciton: NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
Locus tag: Tnap_0641
Name: hycC
Funciton: NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
Locus tag: Tnap_0640
Name: TM0009
Funciton: rubrerythrin
Tnap_0643
hycA
NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
Tnap_0642
hycB
NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
Tnap_0641
hycC
NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
Tnap_0640
TM0009
rubrerythrin
Position: -30
Score: 4.6
Sequence: TTGTTATAATAGTAACAA
Locus tag: Tnap_0810
Name: TM0179
Funciton: hypothetical protein
Tnap_0810
TM0179
hypothetical protein
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