Regulons of Burkholderia cepacia AMMD
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
BPSL1086 |
|
Metabolite transport |
2 |
2 |
| TF |
BPSL1304 |
|
Sugar utilization |
1 |
1 |
| TF |
BPSS0970 |
|
|
1 |
1 |
| TF |
BPSS1200 |
|
|
1 |
1 |
| TF |
Bamb_1959 |
|
Alkanesulfonates utilization |
2 |
2 |
| TF |
Bamb_2736 |
|
Sugar utilization |
2 |
2 |
| TF |
Bamb_3558 |
|
|
1 |
1 |
| TF |
Bamb_4155 |
|
Sugar utilization |
1 |
1 |
| TF |
Bamb_4265 |
|
|
1 |
1 |
| TF |
Bamb_5788 |
|
|
1 |
1 |
| TF |
Bamb_6386 |
|
|
2 |
2 |
| TF |
Bcep18194_B0628 |
|
|
2 |
1 |
| TF |
Bphy_4590 |
|
Sugar utilization |
2 |
2 |
| TF |
CadR-PbrR |
Lead ion, (Pb2+); Cadmium, ion (Cd2+) |
Lead resistance; Cadmium resistance |
1 |
1 |
| TF |
CueR |
Copper ion, (Cu+) |
Copper resistance |
2 |
1 |
| TF |
EutR |
|
Ectoine utilization |
2 |
2 |
| TF |
EutR |
|
|
2 |
3 |
| TF |
FadP |
|
Fatty acid degradation |
14 |
9 |
| TF |
FdsR |
Formate |
Formate oxydation |
2 |
4 |
| TF |
GabR |
Gamma-aminobutyric acid |
Gamma-aminobutyrate utilization |
3 |
2 |
| TF |
GguR |
|
Glucarate utilization; Galactarate utilization |
11 |
13 |
| TF |
GlcC |
Glycolate |
Glycolate utilization |
2 |
4 |
| TF |
HexR |
2-keto-3-deoxy-6-phosphogluconate |
Central carbohydrate metabolism |
3 |
5 |
| TF |
HrcA |
Heat shock |
Heat shock response |
2 |
2 |
| TF |
HutC |
cis-Urocanic acid |
Histidine utilization |
8 |
9 |
| TF |
HypR |
Proline |
Proline and 4-hydrohyproline utilization |
2 |
2 |
| TF |
IscR |
Iron-sulfur cluster redox state |
Iron-sulfur cluster biogenesis |
1 |
2 |
| TF |
LexA |
DNA damage |
SOS response |
9 |
10 |
| TF |
LiuQ |
|
Branched-chain amino acid degradation |
3 |
4 |
| TF |
LldR |
L-lactate |
Lactate utilization |
2 |
2 |
| TF |
MetR |
Homocysteine |
Methionine biosynthesis |
2 |
2 |
| TF |
ModE |
Molybdate |
Molybdenum homeostasis |
2 |
1 |
| TF |
NagQ |
N-acetylglucosamine |
N-acetylglucosamine utilization |
1 |
1 |
| TF |
NmlR |
Diamide |
Carbonyl stress response |
1 |
1 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
1 |
2 |
| TF |
NsrR |
Nitric oxide |
Nitrosative stress response |
4 |
2 |
| TF |
NtrC |
Phosphorylated NtrB, signal histidine kinase |
Nitrogen assimilation |
3 |
4 |
| TF |
PaaR |
Phenylacetyl-CoA |
Phenylacetic acid degradation |
4 |
4 |
| TF |
PdxW |
Pyridoxal-5-phosphate |
Pyridoxine/pyridoxal homeostasis |
2 |
2 |
| TF |
PdxW2 |
Pyridoxal-5-phosphate |
Pyridoxine/pyridoxal homeostasis |
1 |
1 |
| TF |
PhnR2 |
2-aminoethylphosphonate |
2-aminoethylphosphonate utilization |
4 |
3 |
| TF |
PsrA |
Oleate |
Fatty acid degradation |
2 |
2 |
| TF |
PtxS |
2-keto-D-gluconate |
2-ketogluconate utilization |
3 |
2 |
| TF |
RbsR |
Ribose |
Ribose utilization |
1 |
1 |
| TF |
RutR |
Uracil |
Pyrimidine utilization |
2 |
2 |
| TF |
ScrR |
Sucrose |
Sucrose utilization |
2 |
4 |
| TF |
SdhR |
|
Tricarboxylic acid cycle |
6 |
5 |
| TF |
SoxR |
Paraquat |
Superoxide stress response |
3 |
3 |
| TF |
UdhR |
|
Glucuronate utilization; Galacturonate utilization |
3 |
3 |
| TF |
UraR |
Uracil |
Pyrimidine utilization |
1 |
2 |
| TF |
UreR |
|
|
2 |
4 |
| TF |
UxuR2 |
|
Glucuronate utilization; Galacturonate utilization |
2 |
6 |
| TF |
YdcR |
|
|
4 |
3 |
| TF |
Zur |
Zinc ion, (Zn2+) |
Zinc homeostasis |
2 |
2 |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
7 |
5 |
| RNA |
FMN |
Flavin mononucleotide |
Riboflavin biosynthesis |
1 |
1 |
| RNA |
Glycine |
Glycine |
Glycine metabolism |
1 |
2 |
| RNA |
SAH_riboswitch |
S-adenosylhomocysteine |
Methionine metabolism |
1 |
1 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
2 |
2 |
| RNA |
mini-ykkC |
|
Multidrug resistance |
1 |
1 |
| RNA |
sucA |
|
Tricarboxylic acid cycle |
1 |
1 |
| RNA |
yybP-ykoY |
|
|
2 |
2 |
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