Regulon of PaaR in Burkholderia cepacia AMMD

Properties
Regulator type:	Transcription factor
TF locus tag:	Bamb_0243
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Phenylacetic acid degradation
Effector:	Phenylacetyl-CoA
Regulog:	PaaR - Burkholderia
Statistics of regulated genes:
- Genes	16
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 27 sites [see more]

Member of regulog collections

By trascription factor - PaaR
By taxonomy - Burkholderia
By TF family - TetR
By effector - Phenylacetyl-CoA
By pathway - Phenylacetic acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -61 Score: 6.6 Sequence: ATCTACCGACCGGTCGGTTTAT Locus tag: Bamb_3960 Name: paaH Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) Locus tag: Bamb_3959 Name: paaK2 Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) Locus tag: Bamb_3958 Name: paaF2 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	Bamb_3960	paaH	3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
	Bamb_3959	paaK2	Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
	Bamb_3958	paaF2	Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -63 Score: 6.4 Sequence: TCCGACCAACCGGTCGGTTAAT Locus tag: Bamb_0448 Name: paaZ Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ Locus tag: Bamb_0447 Name: paaJ Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) Locus tag: Bamb_0446 Name: paaF Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) Locus tag: Bamb_0445 Name: paaY Funciton: thioesterase superfamily protein Locus tag: Bamb_0444 Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
	Bamb_0448	paaZ	Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
	Bamb_0447	paaJ	Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
	Bamb_0446	paaF	Enoyl-CoA hydratase (EC 4.2.1.17)
	Bamb_0445	paaY	thioesterase superfamily protein
	Bamb_0444	paaK	Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Position: -88 Score: 6.6 Sequence: ATTAACCGACCGGTTGGTCGGA Locus tag: Bamb_0449 Name: paaG Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	Bamb_0449	paaG	Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -62 Score: 7.1 Sequence: ATTAACCGACCGGTCGGTTGGT Locus tag: Bamb_0249 Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit Locus tag: Bamb_0248 Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit Locus tag: Bamb_0247 Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit Locus tag: Bamb_0246 Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit Locus tag: Bamb_0245 Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-) Locus tag: Bamb_0244 Name: paaW Funciton: Protein of unknown function DUF3658/DUF1835 Locus tag: Bamb_0243 Name: paaR Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family
	Bamb_0249	paaA	Phenylacetate-CoA oxygenase, PaaA subunit
	Bamb_0248	paaB	Phenylacetate-CoA oxygenase, PaaB subunit
	Bamb_0247	paaC	Phenylacetate-CoA oxygenase, PaaC subunit
	Bamb_0246	paaD	Phenylacetate-CoA oxygenase, PaaD subunit
	Bamb_0245	paaE	Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
	Bamb_0244	paaW	Protein of unknown function DUF3658/DUF1835
	Bamb_0243	paaR	Transcriptional regulator of phenylacetic acid degradation, TetR family

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of PaaR in Burkholderia cepacia AMMD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --