Regulon of LexA in Burkholderia cepacia AMMD
| Regulator type: | Transcription factor |
| TF locus tag: | Bamb_1496 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Burkholderia |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 9 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Burkholderia
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -34
Score: 6.5 Sequence: TACTGTATAAATATACAGTA
Locus tag: Bamb_0942
Name: PF04055 Funciton: DNA repair photolyase |
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PF04055
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DNA repair photolyase
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Position: -89
Score: 6.2 Sequence: TACTGTATGTTTGTACAGTA
Locus tag: Bamb_4970
Name: PF10616 Funciton: Protein of unknown function DUF2471
Locus tag: Bamb_4969
Name: PF00589 Funciton: Predicted integrase/recombinase |
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PF10616
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Protein of unknown function DUF2471
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PF00589
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Predicted integrase/recombinase
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Position: -57
Score: 6.2 Sequence: AACTGTATGAATATACAGTA
Locus tag: Bamb_6248
Name: uvrA Funciton: Excinuclease ABC subunit A |
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uvrA
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Excinuclease ABC subunit A
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Position: -45
Score: 5.9 Sequence: TACTGTATAAAAATACAGCT
Position: -25
Score: 5.8 Sequence: CACTGTCTATCCATACAGTT
Locus tag: Bamb_1496
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -93
Score: 6 Sequence: CACTGTTTTTTTATACAGTG
Locus tag: Bamb_2699
Name: recA Funciton: Recombinase A
Locus tag: Bamb_2698
Name: recX Funciton: Regulatory protein RecX |
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recA
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Recombinase A
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recX
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Regulatory protein RecX
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Position: -29
Score: 5.3 Sequence: TACTGGATTTATGAACAGTG
Locus tag: Bamb_3559
Name: BPSS1334 Funciton: Conserved hypothetical protein |
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BPSS1334
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Conserved hypothetical protein
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Position: -32
Score: 6.1 Sequence: TACTGTATATCCATACAGTT
Locus tag: Bamb_2888
Name: imuA Funciton: Predicted RecA/RadA recombinase
Locus tag: Bamb_2887
Name: imuB Funciton: DNA polymerase-like protein PA0670
Locus tag: Bamb_2886
Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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imuA
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Predicted RecA/RadA recombinase
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imuB
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DNA polymerase-like protein PA0670
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dnaE2
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DNA polymerase III alpha subunit (EC 2.7.7.7)
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Position: -4
Score: 5.9 Sequence: CACTGTGTTTTTGTACAGTA
Locus tag: Bamb_2179
Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7) |
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dinB
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DNA polymerase IV (EC 2.7.7.7)
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Position: -30
Score: 5.4 Sequence: ACCTGTACAAACGTACAGTG
Locus tag: Bamb_3800
Name: PF08774 Funciton: Hypothetical protein, restriction endonuclease-like VRR-NUC domain
Locus tag: Bamb_3801
Name: PF06733 Funciton: DinG family ATP-dependent helicase CPE1197 |
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PF08774
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Hypothetical protein, restriction endonuclease-like VRR-NUC domain
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PF06733
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DinG family ATP-dependent helicase CPE1197
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |