Regulog LexA - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Burkholderia
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 9 | 7 |
| Burkholderia mallei ATCC 23344 | 10 | 8 |
| Burkholderia sp. 383 | 13 | 9 |
| Burkholderia cepacia AMMD | 14 | 9 |
| Burkholderia vietnamiensis G4 | 21 | 12 |
| Burkholderia glumae BGR1 | 14 | 8 |
| Burkholderia xenovorans LB400 | 11 | 8 |
| Burkholderia phymatum STM815 | 12 | 7 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| PF04055 |
*
Burkholderia pseudomallei K96243 Site: position = -67 score = 6.26403 sequence = TACTGTATGTTTATACAGTA Gene: BPSL2495: DNA repair photolyase |
*
Burkholderia mallei ATCC 23344 Site: position = -100 score = 6.26403 sequence = TACTGTATGTTTATACAGTA Gene: BMA0406: DNA repair photolyase |
*
Burkholderia sp. 383 Site: position = -46 score = 6.38477 sequence = TACTGTATAAATGTACAGTA Gene: Bcep18194_A4180: DNA repair photolyase |
*
Burkholderia cepacia AMMD Site: position = -34 score = 6.49786 sequence = TACTGTATAAATATACAGTA Gene: Bamb_0942: DNA repair photolyase |
*
Burkholderia vietnamiensis G4 Site: position = -34 score = 6.38477 sequence = TACTGTATAAATGTACAGTA Gene: Bcep1808_0987: DNA repair photolyase |
*
Burkholderia glumae BGR1 Site: position = -67 score = 6.24294 sequence = TACTGTATAAATAAACAGTA Gene: bglu_1g09000: DNA repair photolyase |
*
Burkholderia xenovorans LB400 Site: position = -54 score = 5.88439 sequence = CACTGTATATTTATACAGGT Gene: Bxe_A1003: DNA repair photolyase |
*
Burkholderia phymatum STM815 Site: position = -25 score = 6.34699 sequence = CACTGTATATTTGTACAGTA Gene: Bphy_0767: DNA repair photolyase |
DNA repair photolyase |
| CRON 2. | |||||||||
| PF10616 |
*
Burkholderia pseudomallei K96243 Site: position = 10 score = 6.24992 sequence = TACTGTATATTCGTACAGTA Gene: BPSS0003: Protein of unknown function DUF2471 |
*
Burkholderia mallei ATCC 23344 Site: position = -92 score = 6.24992 sequence = TACTGTATATTCGTACAGTA Gene: BMAA0003: Protein of unknown function DUF2471 |
*
Burkholderia sp. 383 Site: position = -91 score = 6.15094 sequence = TACTGTATGTTTGTACAGTA Gene: Bcep18194_B3181: Protein of unknown function DUF2471 |
*
Burkholderia cepacia AMMD Site: position = -89 score = 6.15094 sequence = TACTGTATGTTTGTACAGTA Gene: Bamb_4970: Protein of unknown function DUF2471 |
*
Burkholderia vietnamiensis G4 Site: position = -89 score = 6.15094 sequence = TACTGTATGTTTGTACAGTA Gene: Bcep1808_3790: Protein of unknown function DUF2471 |
*
Burkholderia glumae BGR1 Site: position = -42 score = 6.34699 sequence = CACTGTATATTTGTACAGTA Gene: bglu_2g00070: Protein of unknown function DUF2471 |
*
Burkholderia xenovorans LB400 Site: position = -43 score = 6.34699 sequence = CACTGTATATTTGTACAGTA Gene: Bxe_B3023: Protein of unknown function DUF2471 |
*
Burkholderia phymatum STM815 Site: position = -44 score = 6.15094 sequence = TACTGTATGTTTGTACAGTA Gene: Bphy_4157: Protein of unknown function DUF2471 |
Protein of unknown function DUF2471 |
| PF00589 |
Gene: BPSS0002: Predicted integrase/recombinase |
Gene: BMAA0002: Predicted integrase/recombinase |
Gene: Bcep18194_B0001: Predicted integrase/recombinase |
Gene: Bamb_4969: Predicted integrase/recombinase |
2
Burkholderia vietnamiensis G4 Gene: Bcep1808_3791: Predicted integrase/recombinase Gene: Bcep1808_7023: Predicted integrase/recombinase |
Gene: bglu_2g00060: Predicted integrase/recombinase |
Gene: Bxe_B3024: Predicted integrase/recombinase |
Gene: Bphy_4156: Predicted integrase/recombinase |
Predicted integrase/recombinase |
| CRON 3. | |||||||||
| uvrA |
*
Burkholderia pseudomallei K96243 Site: position = -143 score = 5.55415 sequence = AGCTGTATAAATATCCAGTA Gene: BPSS0058: Excinuclease ABC subunit A |
*
Burkholderia mallei ATCC 23344 Site: position = -143 score = 5.55415 sequence = AGCTGTATAAATATCCAGTA Gene: BMAA0062: Excinuclease ABC subunit A |
*
Burkholderia sp. 383 Site: position = -144 score = 6.18821 sequence = AACTGTATGAATATACAGTA Gene: Bcep18194_C7351: Excinuclease ABC subunit A |
*
Burkholderia cepacia AMMD Site: position = -57 score = 6.18821 sequence = AACTGTATGAATATACAGTA Gene: Bamb_6248: Excinuclease ABC subunit A |
*
Burkholderia vietnamiensis G4 Site: position = -108 score = 6.07512 sequence = AACTGTATGAATGTACAGTA Gene: Bcep1808_6497: Excinuclease ABC subunit A |
*
Burkholderia glumae BGR1 Site: position = -109 score = 5.79812 sequence = AGCTGTATGAATATACAGTA Gene: bglu_2g07270: Excinuclease ABC subunit A |
*
Burkholderia xenovorans LB400 Site: position = -109 score = 6.05794 sequence = ACCTGTATAAATATACAGTA Gene: Bxe_A3001: Excinuclease ABC subunit A |
*
Burkholderia phymatum STM815 Site: position = -73 score = 6.28719 sequence = AACTGTATAAACATACAGTA Gene: Bphy_1549: Excinuclease ABC subunit A |
Excinuclease ABC subunit A |
| CRON 4. | |||||||||
| lexA |
*
Burkholderia pseudomallei K96243 Site: position = -45 score = 5.88308 sequence = TACTGTATAAAAATACAGCT Site: position = -25 score = 5.63132 sequence = CACTGTCTATCCATACAGTC Gene: BPSL1840: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Burkholderia mallei ATCC 23344 Site: position = -45 score = 5.81055 sequence = TACTGTATAAAAATACAGAT Site: position = -25 score = 5.63132 sequence = CACTGTCTATCCATACAGTC Gene: BMA1211: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Burkholderia sp. 383 Site: position = -45 score = 5.88308 sequence = TACTGTATAAAAATACAGCT Site: position = -25 score = 5.7587 sequence = CACTGTCTATCCATACAGTT Gene: Bcep18194_A4738: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Burkholderia cepacia AMMD Site: position = -45 score = 5.88308 sequence = TACTGTATAAAAATACAGCT Site: position = -25 score = 5.7587 sequence = CACTGTCTATCCATACAGTT Gene: Bamb_1496: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Burkholderia vietnamiensis G4 Site: position = -45 score = 5.88308 sequence = TACTGTATAAAAATACAGCT Site: position = -25 score = 5.7587 sequence = CACTGTCTATCCATACAGTT Gene: Bcep1808_1552: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Burkholderia glumae BGR1 Site: position = 15 score = 5.81055 sequence = TACTGTATAAAAATACAGAT Gene: bglu_1g18740: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Burkholderia xenovorans LB400 Site: position = -45 score = 6.11388 sequence = TACTGTATAAAAATACAGTC Site: position = -25 score = 5.27449 sequence = ACCTGTTCATACATACAGTG Gene: Bxe_A2471: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Burkholderia phymatum STM815 Site: position = -45 score = 5.68317 sequence = TACTGTATAAAAATACAGGC Site: position = -25 score = 5.39212 sequence = ACCTGTCTATCCATACAGTG Gene: Bphy_1630: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| CRON 5. | |||||||||
| BPSS1334 |
*
Burkholderia pseudomallei K96243 Site: position = -29 score = 5.69381 sequence = TACTGTATTTATGTCCAGTG Gene: BPSS1334: Conserved hypothetical protein |
*
Burkholderia mallei ATCC 23344 Site: position = 22 score = 5.1041 sequence = TACTGGATAAATTAACAGTA Gene: BMAA0943: Conserved hypothetical protein |
*
Burkholderia sp. 383 Site: position = -29 score = 5.88451 sequence = TACTGTATTTATGAACAGTG Gene: Bcep18194_B1879: Conserved hypothetical protein |
*
Burkholderia cepacia AMMD Site: position = -29 score = 5.28772 sequence = TACTGGATTTATGAACAGTG Gene: Bamb_3559: Conserved hypothetical protein |
*
Burkholderia vietnamiensis G4 Site: position = -140 score = 5.00486 sequence = AGCTGTATAACCAACCAGTA Gene: Bcep1808_4711: Conserved hypothetical protein |
*
Burkholderia glumae BGR1 Site: position = -31 score = 5.56884 sequence = CACTGTATTCATAAACAGTA Gene: bglu_2g10090: Conserved hypothetical protein |
*
Burkholderia xenovorans LB400 Site: position = -44 score = 5.70088 sequence = TACTGTATAAATTAACAGTA Gene: Bxe_A3818: Conserved hypothetical protein |
|
Conserved hypothetical protein |
| CRON 6. | |||||||||
| PF08774 |
|
|
*
Burkholderia sp. 383 Site: position = -30 score = 5.49932 sequence = ACCTGTACAAATGTACAGTG Gene: Bcep18194_B1631: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
*
Burkholderia cepacia AMMD Site: position = -30 score = 5.39665 sequence = ACCTGTACAAACGTACAGTG Gene: Bamb_3800: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
*
Burkholderia vietnamiensis G4 Site: position = -30 score = 5.39665 sequence = ACCTGTACAAACGTACAGTG Gene: Bcep1808_4916: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
Gene: bglu_2g11950: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
*
Burkholderia xenovorans LB400 Site: position = -34 score = 5.8229 sequence = CACTGTATATACATACAGGT Gene: Bxe_B1179: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
*
Burkholderia phymatum STM815 Site: position = -37 score = 5.58714 sequence = GGCTGTATAAATATACAGTT Gene: Bphy_5308: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
| PF06733 |
|
|
Gene: Bcep18194_B1630: DinG family ATP-dependent helicase CPE1197 |
Gene: Bamb_3801: DinG family ATP-dependent helicase CPE1197 |
Gene: Bcep1808_4917: DinG family ATP-dependent helicase CPE1197 |
Gene: bglu_2g11940: DinG family ATP-dependent helicase CPE1197 |
Gene: Bxe_B1180: DinG family ATP-dependent helicase CPE1197 |
Gene: Bphy_5309: DinG family ATP-dependent helicase CPE1197 |
DinG family ATP-dependent helicase CPE1197 |
| CRON 7. | |||||||||
| dinB |
*
Burkholderia pseudomallei K96243 Site: position = -28 score = 5.86667 sequence = CACTGTGTTTTTGTACAGTA Gene: BPSL2306: DNA polymerase IV (EC 2.7.7.7) |
*
Burkholderia mallei ATCC 23344 Site: position = -28 score = 5.86667 sequence = CACTGTGTTTTTGTACAGTA Gene: BMA1727: DNA polymerase IV (EC 2.7.7.7) |
*
Burkholderia sp. 383 Site: position = -28 score = 5.86667 sequence = CACTGTGTTTTTGTACAGTA Gene: Bcep18194_A5448: DNA polymerase IV (EC 2.7.7.7) |
*
Burkholderia cepacia AMMD Site: position = -4 score = 5.86667 sequence = CACTGTGTTTTTGTACAGTA Gene: Bamb_2179: DNA polymerase IV (EC 2.7.7.7) |
*
Burkholderia vietnamiensis G4 Site: position = -28 score = 5.86667 sequence = CACTGTGTTTTTGTACAGTA Gene: Bcep1808_2222: DNA polymerase IV (EC 2.7.7.7) |
Gene: bglu_1g24860: DNA polymerase IV (EC 2.7.7.7) |
|
|
DNA polymerase IV (EC 2.7.7.7) |
| CRON 8. | |||||||||
| imuA |
|
*
Burkholderia mallei ATCC 23344 Site: position = -32 score = 6.2821 sequence = TACTGTATAAACGTACAGTA Gene: BMA3143: Predicted RecA/RadA recombinase |
*
Burkholderia sp. 383 Site: position = -32 score = 6.06751 sequence = TACTGTATATCCATACAGTT Gene: Bcep18194_A6158: Predicted RecA/RadA recombinase |
*
Burkholderia cepacia AMMD Site: position = -32 score = 6.06751 sequence = TACTGTATATCCATACAGTT Gene: Bamb_2888: Predicted RecA/RadA recombinase |
*4
Burkholderia vietnamiensis G4 Site: position = -32 score = 6.06751 sequence = TACTGTATATCCATACAGTT Gene: Bcep1808_2932: Predicted RecA/RadA recombinase Site: position = -36 score = 5.70932 sequence = TACTGTATATCCATACAGCT Gene: Bcep1808_6888: Predicted RecA/RadA recombinase Site: position = -34 score = 5.70932 sequence = TACTGTATATCCATACAGCT Gene: Bcep1808_2009: Predicted RecA/RadA recombinase Site: position = -39 score = 5.94852 sequence = ACCTGTATATTTATACAGTG Gene: Bcep1808_7144: Predicted RecA/RadA recombinase |
*2
Burkholderia glumae BGR1 Site: position = -32 score = 6.39519 sequence = TACTGTATAAACATACAGTA Gene: bglu_1g31560: Predicted RecA/RadA recombinase Site: position = -166 score = 6.09003 sequence = GACTGTATATTTATACAGTA Gene: bglu_4p0880: Predicted RecA/RadA recombinase |
*
Burkholderia xenovorans LB400 Site: position = -32 score = 6.21249 sequence = TACTGTATATCCATACAGTA Gene: Bxe_A0227: Predicted RecA/RadA recombinase |
*
Burkholderia phymatum STM815 Site: position = -34 score = 6.35289 sequence = TACTGTATAAATATACAGTT Gene: Bphy_1972: Predicted RecA/RadA recombinase |
Predicted RecA/RadA recombinase |
| imuB |
Gene: BPSL0471: DNA polymerase-like protein PA0670 |
|
Gene: Bcep18194_A6157: DNA polymerase-like protein PA0670 |
Gene: Bamb_2887: DNA polymerase-like protein PA0670 |
3
Burkholderia vietnamiensis G4 Gene: Bcep1808_2931: DNA polymerase-like protein PA0670 Gene: Bcep1808_2008: DNA polymerase-like protein PA0670 Gene: Bcep1808_7143: DNA polymerase-like protein PA0670 |
2
Burkholderia glumae BGR1 Gene: bglu_1g31550: DNA polymerase-like protein PA0670 Gene: bglu_4p0890: DNA polymerase-like protein PA0670 |
|
Gene: Bphy_1971: DNA polymerase-like protein PA0670 |
DNA polymerase-like protein PA0670 |
| dnaE2 |
Gene: BPSL0472: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: BMA3145: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: Bcep18194_A6156: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: Bamb_2886: DNA polymerase III alpha subunit (EC 2.7.7.7) |
3
Burkholderia vietnamiensis G4 Gene: Bcep1808_2930: DNA polymerase III alpha subunit (EC 2.7.7.7) Gene: Bcep1808_2007: DNA polymerase III alpha subunit (EC 2.7.7.7) Gene: Bcep1808_7142: DNA polymerase III alpha subunit (EC 2.7.7.7) |
2
Burkholderia glumae BGR1 Gene: bglu_1g31540: DNA polymerase III alpha subunit (EC 2.7.7.7) Gene: bglu_4p0900: DNA polymerase III alpha subunit (EC 2.7.7.7) |
|
Gene: Bphy_1970: DNA polymerase III alpha subunit (EC 2.7.7.7) |
DNA polymerase III alpha subunit (EC 2.7.7.7) |
| CRON 9. | |||||||||
| recA |
*
Burkholderia pseudomallei K96243 Site: position = -108 score = 5.96148 sequence = CACTGTTTTTTTATACAGTG Gene: BPSL0776: Recombinase A |
*
Burkholderia mallei ATCC 23344 Site: position = -108 score = 5.96148 sequence = CACTGTTTTTTTATACAGTG Gene: BMA0272: Recombinase A |
*
Burkholderia sp. 383 Site: position = -121 score = 5.96148 sequence = CACTGTTTTTTTATACAGTG Gene: Bcep18194_A5979: Recombinase A |
*
Burkholderia cepacia AMMD Site: position = -93 score = 5.96148 sequence = CACTGTTTTTTTATACAGTG Gene: Bamb_2699: Recombinase A |
*
Burkholderia vietnamiensis G4 Site: position = -93 score = 5.96148 sequence = CACTGTTTTTTTATACAGTG Gene: Bcep1808_2763: Recombinase A |
*
Burkholderia glumae BGR1 Site: position = -98 score = 5.96148 sequence = CACTGTTTTTTTATACAGTG Gene: bglu_1g29970: Recombinase A |
*
Burkholderia xenovorans LB400 Site: position = -112 score = 5.96707 sequence = TACTGTTTTTTTATACAGTG Gene: Bxe_A0671: Recombinase A |
*
Burkholderia phymatum STM815 Site: position = -121 score = 5.96707 sequence = TACTGTTTTTTTATACAGTG Gene: Bphy_0440: Recombinase A |
Recombinase A |
| recX |
Gene: BPSL0777: Regulatory protein RecX |
Gene: BMA0273: Regulatory protein RecX |
Gene: Bcep18194_A5978: Regulatory protein RecX |
Gene: Bamb_2698: Regulatory protein RecX |
Gene: Bcep1808_2762: Regulatory protein RecX |
Gene: bglu_1g29960: Regulatory protein RecX |
Gene: Bxe_A0672: Regulatory protein RecX |
Gene: Bphy_0441: Regulatory protein RecX |
Regulatory protein RecX |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |