Regulon of NtrC in Burkholderia cepacia AMMD
| Regulator type: | Transcription factor |
| TF locus tag: | Bamb_2184 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Burkholderia |
| Statistics of regulated genes: | |
| - Genes | 8 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -255
Score: 4.6 Sequence: CGCGCCAGACCGGTGCA
Locus tag: Bamb_1085
Name: amtB Funciton: Ammonia permease |
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amtB
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Ammonia permease
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Position: -309
Score: 4 Sequence: CGCACGGCGACAGTGCT
Position: -288
Score: 4.1 Sequence: CGCACCACATCTGTGCC
Locus tag: Bamb_3937
Name: narK Funciton: Nitrate/nitrite antiporter
Locus tag: Bamb_3936
Name: nasD Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: Bamb_3935
Name: nasE Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: Bamb_3934
Name: nasBA Funciton: Assimilatory nitrate reductase, large and small subunits protein fusion (EC:1.7.99.4) |
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narK
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Nitrate/nitrite antiporter
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nasD
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Nitrite reductase, large subunit (EC 1.7.1.4)
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nasE
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Nitrite reductase, small subunit (EC 1.7.1.4)
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nasBA
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Assimilatory nitrate reductase, large and small subunits protein fusion (EC:1.7.99.4)
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Position: -242
Score: 5.1 Sequence: TGCACCATTTCAGTGCG
Locus tag: Bamb_2186
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Locus tag: Bamb_2185
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: Bamb_2184
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |