Regulon of SdhR in Burkholderia cepacia AMMD

Properties
Regulator type:	Transcription factor
TF locus tag:	Bamb_3310
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Regulog:	SdhR - Burkholderia
Statistics of regulated genes:
- Genes	12
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 34 sites [see more]

Member of regulog collections

By taxonomy - Burkholderia
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Regulated operons
	Locus Tag	Name	Function
Position: -135 Score: 6 Sequence: TCTTATGTCTTATATAAGAGTTGGTC Locus tag: Bamb_3879 Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1)
	Bamb_3879	aceA	Isocitrate lyase (EC 4.1.3.1)
Position: -184 Score: 7.1 Sequence: TCATCTGTCTTATATAAGACATAAGG Locus tag: Bamb_2572 Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
	Bamb_2572	icd	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Position: -150 Score: 6 Sequence: CCCCAACTCTTATATAAGACATAAGA Locus tag: Bamb_5692 Name: acnB Funciton: Aconitate hydratase 2 (EC 4.2.1.3)
	Bamb_5692	acnB	Aconitate hydratase 2 (EC 4.2.1.3)
Position: -69 Score: 7.4 Sequence: TCATATGTCTTATATAAGACAGATGT Locus tag: Bamb_3310 Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family Locus tag: Bamb_3311 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: Bamb_3312 Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein Locus tag: Bamb_3313 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: Bamb_3314 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: Bamb_3315 Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit Locus tag: Bamb_3316 Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
	Bamb_3310	sdhR	Transcriptional regulator of TCA cycle, GntR family
	Bamb_3311	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	Bamb_3312	sdhD	Succinate dehydrogenase hydrophobic membrane anchor protein
	Bamb_3313	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	Bamb_3314	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	Bamb_3315	COG2938	succinate dehydrogenase iron-sulfur subunit
	Bamb_3316	gltA	Citrate synthase (si) (EC 2.3.3.1)
Position: -245 Score: 7.4 Sequence: ACATCTGTCTTATATAAGACATATGA Locus tag: Bamb_3309 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: Bamb_3308 Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6)
	Bamb_3309	mdh	Malate dehydrogenase (EC 1.1.1.37)
	Bamb_3308	citE	Citrate lyase beta chain (EC 4.1.3.6)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD