Regulon of SdhR in Burkholderia cepacia AMMD
| Regulator type: | Transcription factor |
| TF locus tag: | Bamb_3310 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Tricarboxylic acid cycle |
| Effector: | |
| Regulog: | SdhR - Burkholderia |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - GntR/Others
- By pathway - Tricarboxylic acid cycle
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -135
Score: 6 Sequence: TCTTATGTCTTATATAAGAGTTGGTC
Locus tag: Bamb_3879
Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1) |
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aceA
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Isocitrate lyase (EC 4.1.3.1)
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Position: -184
Score: 7.1 Sequence: TCATCTGTCTTATATAAGACATAAGG
Locus tag: Bamb_2572
Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
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icd
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Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
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Position: -150
Score: 6 Sequence: CCCCAACTCTTATATAAGACATAAGA
Locus tag: Bamb_5692
Name: acnB Funciton: Aconitate hydratase 2 (EC 4.2.1.3) |
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acnB
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Aconitate hydratase 2 (EC 4.2.1.3)
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Position: -69
Score: 7.4 Sequence: TCATATGTCTTATATAAGACAGATGT
Locus tag: Bamb_3310
Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: Bamb_3311
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Bamb_3312
Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Bamb_3313
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Bamb_3314
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Bamb_3315
Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: Bamb_3316
Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1) |
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sdhR
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Transcriptional regulator of TCA cycle, GntR family
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sdhC
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Succinate dehydrogenase cytochrome b-556 subunit
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sdhD
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Succinate dehydrogenase hydrophobic membrane anchor protein
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sdhA
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Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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sdhB
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Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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COG2938
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succinate dehydrogenase iron-sulfur subunit
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gltA
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Citrate synthase (si) (EC 2.3.3.1)
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Position: -245
Score: 7.4 Sequence: ACATCTGTCTTATATAAGACATATGA
Locus tag: Bamb_3309
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Bamb_3308
Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6) |
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mdh
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Malate dehydrogenase (EC 1.1.1.37)
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citE
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Citrate lyase beta chain (EC 4.1.3.6)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |