Regulog SdhR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Tricarboxylic acid cycle |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - GntR/Others
- By pathway - Tricarboxylic acid cycle
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia cepacia AMMD | 12 | 5 |
| Burkholderia glumae BGR1 | 12 | 4 |
| Burkholderia mallei ATCC 23344 | 9 | 3 |
| Burkholderia phymatum STM815 | 11 | 4 |
| Burkholderia pseudomallei K96243 | 10 | 3 |
| Burkholderia sp. 383 | 12 | 5 |
| Burkholderia vietnamiensis G4 | 12 | 5 |
| Burkholderia xenovorans LB400 | 12 | 5 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| mdh |
*
Burkholderia cepacia AMMD Site: position = -245 score = 7.3786 sequence = ACATCTGTCTTATATAAGACATATGA Gene: Bamb_3309: Malate dehydrogenase (EC 1.1.1.37) |
*
Burkholderia glumae BGR1 Site: position = -244 score = 7.3786 sequence = ACATCTGTCTTATATAAGACATATGA Gene: bglu_2g08210: Malate dehydrogenase (EC 1.1.1.37) |
*
Burkholderia mallei ATCC 23344 Site: position = -245 score = 7.46045 sequence = ACATCTGTCTTATATAAGACATAAGA Gene: BMAA1751: Malate dehydrogenase (EC 1.1.1.37) |
Gene: Bphy_4358: Malate dehydrogenase (EC 1.1.1.37) |
*
Burkholderia pseudomallei K96243 Site: position = -245 score = 7.46045 sequence = ACATCTGTCTTATATAAGACATAAGA Gene: BPSS1722: Malate dehydrogenase (EC 1.1.1.37) |
*
Burkholderia sp. 383 Site: position = -245 score = 7.3786 sequence = ACATCTGTCTTATATAAGACATATGA Gene: Bcep18194_B2154: Malate dehydrogenase (EC 1.1.1.37) |
*2
Burkholderia vietnamiensis G4 Gene: Bcep1808_3766: Malate dehydrogenase (EC 1.1.1.37) Site: position = -246 score = 7.3786 sequence = ACATCTGTCTTATATAAGACATATGA Gene: Bcep1808_4408: Malate dehydrogenase (EC 1.1.1.37) |
Gene: Bxe_B2898: Malate dehydrogenase (EC 1.1.1.37) |
Malate dehydrogenase (EC 1.1.1.37) |
| citE |
Gene: Bamb_3308: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: bglu_2g08200: Citrate lyase beta chain (EC 4.1.3.6) |
|
Gene: Bphy_4357: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: BPSS1723: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: Bcep18194_B2155: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: Bcep1808_4407: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: Bxe_B2899: Citrate lyase beta chain (EC 4.1.3.6) |
Citrate lyase beta chain (EC 4.1.3.6) |
| Bphy_4359 |
|
|
|
*
Burkholderia phymatum STM815 Site: position = -39 score = 7.56775 sequence = AGTTATGTCTTATATAAGACATAAGA Gene: Bphy_4359: hypothetical protein |
|
|
|
*
Burkholderia xenovorans LB400 Site: position = -62 score = 7.56775 sequence = AGTTATGTCTTATATAAGACATAAGA Gene: Bxe_B2897: hypothetical protein |
hypothetical protein |
| CRON 2. | |||||||||
| icd |
*
Burkholderia cepacia AMMD Site: position = -184 score = 7.14687 sequence = TCATCTGTCTTATATAAGACATAAGG Gene: Bamb_2572: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Burkholderia glumae BGR1 Site: position = -136 score = 6.39756 sequence = TCTTTTGTCTTATATAAGACTTGATG Gene: bglu_1g28920: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Burkholderia mallei ATCC 23344 Site: position = -175 score = 6.31396 sequence = TCTTTTGTCTTATATAAGACTTGCGC Gene: BMA0486: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Burkholderia phymatum STM815 Site: position = -262 score = 6.19737 sequence = GATCCTCTCTTATATAAGACATAGGA Gene: Bphy_0565: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Burkholderia pseudomallei K96243 Site: position = -175 score = 6.31396 sequence = TCTTTTGTCTTATATAAGACTTGCGC Gene: BPSL0896: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Burkholderia sp. 383 Site: position = -186 score = 7.10782 sequence = TCCTCTGTCTTATATAAGACATAAGT Gene: Bcep18194_A5856: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Burkholderia vietnamiensis G4 Site: position = -184 score = 6.79424 sequence = TCCTCTGTCTTATATAAGACATAAGG Gene: Bcep1808_2602: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*2
Burkholderia xenovorans LB400 Gene: Bxe_B2750: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) Site: position = -217 score = 5.93917 sequence = CTCGTTGTCTTATATAAGATATAAGA Gene: Bxe_A0797: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
| icd2 |
Gene: Bamb_2571: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: bglu_1g28910: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
|
Gene: Bphy_5456: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
|
Gene: Bcep18194_A5855: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: Bcep1808_2601: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Burkholderia xenovorans LB400 Site: position = -261 score = 5.14144 sequence = CGTCAGGTCATCTATAAGACATCTGT Gene: Bxe_B0532: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
| CRON 3. | |||||||||
| aceA |
*
Burkholderia cepacia AMMD Site: position = -135 score = 6.01802 sequence = TCTTATGTCTTATATAAGAGTTGGTC Gene: Bamb_3879: Isocitrate lyase (EC 4.1.3.1) |
|
|
|
|
*
Burkholderia sp. 383 Site: position = -135 score = 6.77246 sequence = TCTTATGTCTTATATAAGACATCGCC Gene: Bcep18194_B0610: Isocitrate lyase (EC 4.1.3.1) |
*
Burkholderia vietnamiensis G4 Site: position = -135 score = 5.88246 sequence = TCTTATGTCTTATATAAGAGTTGGCC Gene: Bcep1808_4997: Isocitrate lyase (EC 4.1.3.1) |
|
Isocitrate lyase (EC 4.1.3.1) |
| CRON 4. | |||||||||
| acnB |
*
Burkholderia cepacia AMMD Site: position = -150 score = 5.96445 sequence = CCCCAACTCTTATATAAGACATAAGA Gene: Bamb_5692: Aconitate hydratase 2 (EC 4.2.1.3) |
*
Burkholderia glumae BGR1 Site: position = -136 score = 6.67397 sequence = TCTCAACTCTTATATAAGATATAAGA Gene: bglu_2g14740: Aconitate hydratase 2 (EC 4.2.1.3) |
|
*
Burkholderia phymatum STM815 Site: position = -137 score = 6.12938 sequence = AACCAACTCTTATATAAGACATAAGA Gene: Bphy_5855: Aconitate hydratase 2 (EC 4.2.1.3) |
|
*
Burkholderia sp. 383 Site: position = -139 score = 5.51826 sequence = CTCCAACTCTTATATAAGACATAAGA Gene: Bcep18194_B1125: Aconitate hydratase 2 (EC 4.2.1.3) |
*
Burkholderia vietnamiensis G4 Site: position = -149 score = 6.12938 sequence = AACCAACTCTTATATAAGACATAAGA Gene: Bcep1808_5672: Aconitate hydratase 2 (EC 4.2.1.3) |
*
Burkholderia xenovorans LB400 Site: position = -137 score = 5.56122 sequence = CGACGACTCTTATATAAGACATAAGA Gene: Bxe_B1533: Aconitate hydratase 2 (EC 4.2.1.3) |
Aconitate hydratase 2 (EC 4.2.1.3) |
| CRON 5. | |||||||||
| sdhR |
*
Burkholderia cepacia AMMD Site: position = -69 score = 7.3786 sequence = TCATATGTCTTATATAAGACAGATGT Gene: Bamb_3310: Transcriptional regulator of TCA cycle, GntR family |
*
Burkholderia glumae BGR1 Site: position = -69 score = 7.3786 sequence = TCATATGTCTTATATAAGACAGATGT Gene: bglu_2g08220: Transcriptional regulator of TCA cycle, GntR family |
*
Burkholderia mallei ATCC 23344 Site: position = 119 score = 7.46045 sequence = TCTTATGTCTTATATAAGACAGATGT Gene: BMAA1750: Transcriptional regulator of TCA cycle, GntR family |
*
Burkholderia phymatum STM815 Site: position = -78 score = 7.56775 sequence = TCTTATGTCTTATATAAGACATAACT Gene: Bphy_4360: Transcriptional regulator of TCA cycle, GntR family |
*
Burkholderia pseudomallei K96243 Site: position = -79 score = 7.46045 sequence = TCTTATGTCTTATATAAGACAGATGT Gene: BPSS1721: Transcriptional regulator of TCA cycle, GntR family |
*
Burkholderia sp. 383 Site: position = -69 score = 7.3786 sequence = TCATATGTCTTATATAAGACAGATGT Gene: Bcep18194_B2153: Transcriptional regulator of TCA cycle, GntR family |
*
Burkholderia vietnamiensis G4 Site: position = -69 score = 7.3786 sequence = TCATATGTCTTATATAAGACAGATGT Gene: Bcep1808_4409: Transcriptional regulator of TCA cycle, GntR family |
*
Burkholderia xenovorans LB400 Site: position = -78 score = 7.56775 sequence = TCTTATGTCTTATATAAGACATAACT Gene: Bxe_B2896: Transcriptional regulator of TCA cycle, GntR family |
Transcriptional regulator of TCA cycle, GntR family |
| sdhC |
Gene: Bamb_3311: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: bglu_2g08230: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: BMAA1749: Succinate dehydrogenase cytochrome b-556 subunit |
2
Burkholderia phymatum STM815 Gene: Bphy_5586: Succinate dehydrogenase cytochrome b-556 subunit Gene: Bphy_4361: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: BPSS1720: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: Bcep18194_B2152: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: Bcep1808_4410: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: Bxe_B2895: Succinate dehydrogenase cytochrome b-556 subunit |
Succinate dehydrogenase cytochrome b-556 subunit |
| sdhD |
Gene: Bamb_3312: Succinate dehydrogenase hydrophobic membrane anchor protein |
Gene: bglu_2g08240: Succinate dehydrogenase hydrophobic membrane anchor protein |
Gene: BMAA1748: Succinate dehydrogenase hydrophobic membrane anchor protein |
2
Burkholderia phymatum STM815 Gene: Bphy_5587: Succinate dehydrogenase hydrophobic membrane anchor protein Gene: Bphy_4362: Succinate dehydrogenase hydrophobic membrane anchor protein |
Gene: BPSS1719: Succinate dehydrogenase hydrophobic membrane anchor protein |
Gene: Bcep18194_B2151: Succinate dehydrogenase hydrophobic membrane anchor protein |
Gene: Bcep1808_4411: Succinate dehydrogenase hydrophobic membrane anchor protein |
Gene: Bxe_B2894: Succinate dehydrogenase hydrophobic membrane anchor protein |
Succinate dehydrogenase hydrophobic membrane anchor protein |
| sdhA |
Gene: Bamb_3313: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: bglu_2g08250: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: BMAA1747: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
2
Burkholderia phymatum STM815 Gene: Bphy_5588: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Gene: Bphy_4363: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: BPSS1718: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: Bcep18194_B2150: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: Bcep1808_4412: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: Bxe_B2893: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
| sdhB |
Gene: Bamb_3314: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: bglu_2g08260: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: BMAA1746: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
2
Burkholderia phymatum STM815 Gene: Bphy_5589: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Gene: Bphy_4364: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: BPSS1717: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: Bcep18194_B2149: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: Bcep1808_4413: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: Bxe_B2892: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
| COG2938 |
Gene: Bamb_3315: succinate dehydrogenase iron-sulfur subunit |
Gene: bglu_2g08270: succinate dehydrogenase iron-sulfur subunit |
Gene: BMAA1745: succinate dehydrogenase iron-sulfur subunit |
2
Burkholderia phymatum STM815 Gene: Bphy_4365: succinate dehydrogenase iron-sulfur subunit Gene: Bphy_5590: succinate dehydrogenase iron-sulfur subunit |
Gene: BPSS1716: succinate dehydrogenase iron-sulfur subunit |
Gene: Bcep18194_B2148: succinate dehydrogenase iron-sulfur subunit |
Gene: Bcep1808_4414: succinate dehydrogenase iron-sulfur subunit |
Gene: Bxe_B2891: succinate dehydrogenase iron-sulfur subunit |
succinate dehydrogenase iron-sulfur subunit |
| gltA |
Gene: Bamb_3316: Citrate synthase (si) (EC 2.3.3.1) |
Gene: bglu_2g08280: Citrate synthase (si) (EC 2.3.3.1) |
Gene: BMAA1744: Citrate synthase (si) (EC 2.3.3.1) |
2
Burkholderia phymatum STM815 Gene: Bphy_4366: Citrate synthase (si) (EC 2.3.3.1) Gene: Bphy_5205: Citrate synthase (si) (EC 2.3.3.1) |
Gene: BPSS1715: Citrate synthase (si) (EC 2.3.3.1) |
Gene: Bcep18194_B2147: Citrate synthase (si) (EC 2.3.3.1) |
Gene: Bcep1808_4415: Citrate synthase (si) (EC 2.3.3.1) |
2
Burkholderia xenovorans LB400 Gene: Bxe_B1134: Citrate synthase (si) (EC 2.3.3.1) Gene: Bxe_B2890: Citrate synthase (si) (EC 2.3.3.1) |
Citrate synthase (si) (EC 2.3.3.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |