Regulog SdhR - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 34 sites [see more]

Member of regulog collections

By taxonomy - Burkholderia
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia cepacia AMMD	12	5
Burkholderia glumae BGR1	12	4
Burkholderia mallei ATCC 23344	9	3
Burkholderia phymatum STM815	11	4
Burkholderia pseudomallei K96243	10	3
Burkholderia sp. 383	12	5
Burkholderia vietnamiensis G4	12	5
Burkholderia xenovorans LB400	12	5

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
mdh	* Burkholderia cepacia AMMD Site: position = -245 score = 7.3786 sequence = ACATCTGTCTTATATAAGACATATGA Gene: Bamb_3309: Malate dehydrogenase (EC 1.1.1.37)	* Burkholderia glumae BGR1 Site: position = -244 score = 7.3786 sequence = ACATCTGTCTTATATAAGACATATGA Gene: bglu_2g08210: Malate dehydrogenase (EC 1.1.1.37)	* Burkholderia mallei ATCC 23344 Site: position = -245 score = 7.46045 sequence = ACATCTGTCTTATATAAGACATAAGA Gene: BMAA1751: Malate dehydrogenase (EC 1.1.1.37)	Burkholderia phymatum STM815 Gene: Bphy_4358: Malate dehydrogenase (EC 1.1.1.37)	* Burkholderia pseudomallei K96243 Site: position = -245 score = 7.46045 sequence = ACATCTGTCTTATATAAGACATAAGA Gene: BPSS1722: Malate dehydrogenase (EC 1.1.1.37)	* Burkholderia sp. 383 Site: position = -245 score = 7.3786 sequence = ACATCTGTCTTATATAAGACATATGA Gene: Bcep18194_B2154: Malate dehydrogenase (EC 1.1.1.37)	2 Burkholderia vietnamiensis G4* Gene: Bcep1808_3766: Malate dehydrogenase (EC 1.1.1.37) Site: position = -246 score = 7.3786 sequence = ACATCTGTCTTATATAAGACATATGA Gene: Bcep1808_4408: Malate dehydrogenase (EC 1.1.1.37)	Burkholderia xenovorans LB400 Gene: Bxe_B2898: Malate dehydrogenase (EC 1.1.1.37)	Malate dehydrogenase (EC 1.1.1.37)
citE	Burkholderia cepacia AMMD Gene: Bamb_3308: Citrate lyase beta chain (EC 4.1.3.6)	Burkholderia glumae BGR1 Gene: bglu_2g08200: Citrate lyase beta chain (EC 4.1.3.6)	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_4357: Citrate lyase beta chain (EC 4.1.3.6)	Burkholderia pseudomallei K96243 Gene: BPSS1723: Citrate lyase beta chain (EC 4.1.3.6)	Burkholderia sp. 383 Gene: Bcep18194_B2155: Citrate lyase beta chain (EC 4.1.3.6)	Burkholderia vietnamiensis G4 Gene: Bcep1808_4407: Citrate lyase beta chain (EC 4.1.3.6)	Burkholderia xenovorans LB400 Gene: Bxe_B2899: Citrate lyase beta chain (EC 4.1.3.6)	Citrate lyase beta chain (EC 4.1.3.6)
Bphy_4359	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	* Burkholderia phymatum STM815 Site: position = -39 score = 7.56775 sequence = AGTTATGTCTTATATAAGACATAAGA Gene: Bphy_4359: hypothetical protein	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	* Burkholderia xenovorans LB400 Site: position = -62 score = 7.56775 sequence = AGTTATGTCTTATATAAGACATAAGA Gene: Bxe_B2897: hypothetical protein	hypothetical protein

CRON 2.
icd	* Burkholderia cepacia AMMD Site: position = -184 score = 7.14687 sequence = TCATCTGTCTTATATAAGACATAAGG Gene: Bamb_2572: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	* Burkholderia glumae BGR1 Site: position = -136 score = 6.39756 sequence = TCTTTTGTCTTATATAAGACTTGATG Gene: bglu_1g28920: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	* Burkholderia mallei ATCC 23344 Site: position = -175 score = 6.31396 sequence = TCTTTTGTCTTATATAAGACTTGCGC Gene: BMA0486: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	* Burkholderia phymatum STM815 Site: position = -262 score = 6.19737 sequence = GATCCTCTCTTATATAAGACATAGGA Gene: Bphy_0565: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	* Burkholderia pseudomallei K96243 Site: position = -175 score = 6.31396 sequence = TCTTTTGTCTTATATAAGACTTGCGC Gene: BPSL0896: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	* Burkholderia sp. 383 Site: position = -186 score = 7.10782 sequence = TCCTCTGTCTTATATAAGACATAAGT Gene: Bcep18194_A5856: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	* Burkholderia vietnamiensis G4 Site: position = -184 score = 6.79424 sequence = TCCTCTGTCTTATATAAGACATAAGG Gene: Bcep1808_2602: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	2 Burkholderia xenovorans LB400* Gene: Bxe_B2750: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) Site: position = -217 score = 5.93917 sequence = CTCGTTGTCTTATATAAGATATAAGA Gene: Bxe_A0797: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
icd2	Burkholderia cepacia AMMD Gene: Bamb_2571: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Burkholderia glumae BGR1 Gene: bglu_1g28910: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_5456: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Burkholderia pseudomallei K96243	Burkholderia sp. 383 Gene: Bcep18194_A5855: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Burkholderia vietnamiensis G4 Gene: Bcep1808_2601: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	* Burkholderia xenovorans LB400 Site: position = -261 score = 5.14144 sequence = CGTCAGGTCATCTATAAGACATCTGT Gene: Bxe_B0532: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)

CRON 3.
aceA	* Burkholderia cepacia AMMD Site: position = -135 score = 6.01802 sequence = TCTTATGTCTTATATAAGAGTTGGTC Gene: Bamb_3879: Isocitrate lyase (EC 4.1.3.1)	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	* Burkholderia sp. 383 Site: position = -135 score = 6.77246 sequence = TCTTATGTCTTATATAAGACATCGCC Gene: Bcep18194_B0610: Isocitrate lyase (EC 4.1.3.1)	* Burkholderia vietnamiensis G4 Site: position = -135 score = 5.88246 sequence = TCTTATGTCTTATATAAGAGTTGGCC Gene: Bcep1808_4997: Isocitrate lyase (EC 4.1.3.1)	Burkholderia xenovorans LB400	Isocitrate lyase (EC 4.1.3.1)

CRON 4.
acnB	* Burkholderia cepacia AMMD Site: position = -150 score = 5.96445 sequence = CCCCAACTCTTATATAAGACATAAGA Gene: Bamb_5692: Aconitate hydratase 2 (EC 4.2.1.3)	* Burkholderia glumae BGR1 Site: position = -136 score = 6.67397 sequence = TCTCAACTCTTATATAAGATATAAGA Gene: bglu_2g14740: Aconitate hydratase 2 (EC 4.2.1.3)	Burkholderia mallei ATCC 23344	* Burkholderia phymatum STM815 Site: position = -137 score = 6.12938 sequence = AACCAACTCTTATATAAGACATAAGA Gene: Bphy_5855: Aconitate hydratase 2 (EC 4.2.1.3)	Burkholderia pseudomallei K96243	* Burkholderia sp. 383 Site: position = -139 score = 5.51826 sequence = CTCCAACTCTTATATAAGACATAAGA Gene: Bcep18194_B1125: Aconitate hydratase 2 (EC 4.2.1.3)	* Burkholderia vietnamiensis G4 Site: position = -149 score = 6.12938 sequence = AACCAACTCTTATATAAGACATAAGA Gene: Bcep1808_5672: Aconitate hydratase 2 (EC 4.2.1.3)	* Burkholderia xenovorans LB400 Site: position = -137 score = 5.56122 sequence = CGACGACTCTTATATAAGACATAAGA Gene: Bxe_B1533: Aconitate hydratase 2 (EC 4.2.1.3)	Aconitate hydratase 2 (EC 4.2.1.3)

CRON 5.
sdhR	* Burkholderia cepacia AMMD Site: position = -69 score = 7.3786 sequence = TCATATGTCTTATATAAGACAGATGT Gene: Bamb_3310: Transcriptional regulator of TCA cycle, GntR family	* Burkholderia glumae BGR1 Site: position = -69 score = 7.3786 sequence = TCATATGTCTTATATAAGACAGATGT Gene: bglu_2g08220: Transcriptional regulator of TCA cycle, GntR family	* Burkholderia mallei ATCC 23344 Site: position = 119 score = 7.46045 sequence = TCTTATGTCTTATATAAGACAGATGT Gene: BMAA1750: Transcriptional regulator of TCA cycle, GntR family	* Burkholderia phymatum STM815 Site: position = -78 score = 7.56775 sequence = TCTTATGTCTTATATAAGACATAACT Gene: Bphy_4360: Transcriptional regulator of TCA cycle, GntR family	* Burkholderia pseudomallei K96243 Site: position = -79 score = 7.46045 sequence = TCTTATGTCTTATATAAGACAGATGT Gene: BPSS1721: Transcriptional regulator of TCA cycle, GntR family	* Burkholderia sp. 383 Site: position = -69 score = 7.3786 sequence = TCATATGTCTTATATAAGACAGATGT Gene: Bcep18194_B2153: Transcriptional regulator of TCA cycle, GntR family	* Burkholderia vietnamiensis G4 Site: position = -69 score = 7.3786 sequence = TCATATGTCTTATATAAGACAGATGT Gene: Bcep1808_4409: Transcriptional regulator of TCA cycle, GntR family	* Burkholderia xenovorans LB400 Site: position = -78 score = 7.56775 sequence = TCTTATGTCTTATATAAGACATAACT Gene: Bxe_B2896: Transcriptional regulator of TCA cycle, GntR family	Transcriptional regulator of TCA cycle, GntR family
sdhC	Burkholderia cepacia AMMD Gene: Bamb_3311: Succinate dehydrogenase cytochrome b-556 subunit	Burkholderia glumae BGR1 Gene: bglu_2g08230: Succinate dehydrogenase cytochrome b-556 subunit	Burkholderia mallei ATCC 23344 Gene: BMAA1749: Succinate dehydrogenase cytochrome b-556 subunit	2 Burkholderia phymatum STM815 Gene: Bphy_5586: Succinate dehydrogenase cytochrome b-556 subunit Gene: Bphy_4361: Succinate dehydrogenase cytochrome b-556 subunit	Burkholderia pseudomallei K96243 Gene: BPSS1720: Succinate dehydrogenase cytochrome b-556 subunit	Burkholderia sp. 383 Gene: Bcep18194_B2152: Succinate dehydrogenase cytochrome b-556 subunit	Burkholderia vietnamiensis G4 Gene: Bcep1808_4410: Succinate dehydrogenase cytochrome b-556 subunit	Burkholderia xenovorans LB400 Gene: Bxe_B2895: Succinate dehydrogenase cytochrome b-556 subunit	Succinate dehydrogenase cytochrome b-556 subunit
sdhD	Burkholderia cepacia AMMD Gene: Bamb_3312: Succinate dehydrogenase hydrophobic membrane anchor protein	Burkholderia glumae BGR1 Gene: bglu_2g08240: Succinate dehydrogenase hydrophobic membrane anchor protein	Burkholderia mallei ATCC 23344 Gene: BMAA1748: Succinate dehydrogenase hydrophobic membrane anchor protein	2 Burkholderia phymatum STM815 Gene: Bphy_5587: Succinate dehydrogenase hydrophobic membrane anchor protein Gene: Bphy_4362: Succinate dehydrogenase hydrophobic membrane anchor protein	Burkholderia pseudomallei K96243 Gene: BPSS1719: Succinate dehydrogenase hydrophobic membrane anchor protein	Burkholderia sp. 383 Gene: Bcep18194_B2151: Succinate dehydrogenase hydrophobic membrane anchor protein	Burkholderia vietnamiensis G4 Gene: Bcep1808_4411: Succinate dehydrogenase hydrophobic membrane anchor protein	Burkholderia xenovorans LB400 Gene: Bxe_B2894: Succinate dehydrogenase hydrophobic membrane anchor protein	Succinate dehydrogenase hydrophobic membrane anchor protein
sdhA	Burkholderia cepacia AMMD Gene: Bamb_3313: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Burkholderia glumae BGR1 Gene: bglu_2g08250: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Burkholderia mallei ATCC 23344 Gene: BMAA1747: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	2 Burkholderia phymatum STM815 Gene: Bphy_5588: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Gene: Bphy_4363: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Burkholderia pseudomallei K96243 Gene: BPSS1718: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Burkholderia sp. 383 Gene: Bcep18194_B2150: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Burkholderia vietnamiensis G4 Gene: Bcep1808_4412: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Burkholderia xenovorans LB400 Gene: Bxe_B2893: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
sdhB	Burkholderia cepacia AMMD Gene: Bamb_3314: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Burkholderia glumae BGR1 Gene: bglu_2g08260: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Burkholderia mallei ATCC 23344 Gene: BMAA1746: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	2 Burkholderia phymatum STM815 Gene: Bphy_5589: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Gene: Bphy_4364: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Burkholderia pseudomallei K96243 Gene: BPSS1717: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Burkholderia sp. 383 Gene: Bcep18194_B2149: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Burkholderia vietnamiensis G4 Gene: Bcep1808_4413: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Burkholderia xenovorans LB400 Gene: Bxe_B2892: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
COG2938	Burkholderia cepacia AMMD Gene: Bamb_3315: succinate dehydrogenase iron-sulfur subunit	Burkholderia glumae BGR1 Gene: bglu_2g08270: succinate dehydrogenase iron-sulfur subunit	Burkholderia mallei ATCC 23344 Gene: BMAA1745: succinate dehydrogenase iron-sulfur subunit	2 Burkholderia phymatum STM815 Gene: Bphy_4365: succinate dehydrogenase iron-sulfur subunit Gene: Bphy_5590: succinate dehydrogenase iron-sulfur subunit	Burkholderia pseudomallei K96243 Gene: BPSS1716: succinate dehydrogenase iron-sulfur subunit	Burkholderia sp. 383 Gene: Bcep18194_B2148: succinate dehydrogenase iron-sulfur subunit	Burkholderia vietnamiensis G4 Gene: Bcep1808_4414: succinate dehydrogenase iron-sulfur subunit	Burkholderia xenovorans LB400 Gene: Bxe_B2891: succinate dehydrogenase iron-sulfur subunit	succinate dehydrogenase iron-sulfur subunit
gltA	Burkholderia cepacia AMMD Gene: Bamb_3316: Citrate synthase (si) (EC 2.3.3.1)	Burkholderia glumae BGR1 Gene: bglu_2g08280: Citrate synthase (si) (EC 2.3.3.1)	Burkholderia mallei ATCC 23344 Gene: BMAA1744: Citrate synthase (si) (EC 2.3.3.1)	2 Burkholderia phymatum STM815 Gene: Bphy_4366: Citrate synthase (si) (EC 2.3.3.1) Gene: Bphy_5205: Citrate synthase (si) (EC 2.3.3.1)	Burkholderia pseudomallei K96243 Gene: BPSS1715: Citrate synthase (si) (EC 2.3.3.1)	Burkholderia sp. 383 Gene: Bcep18194_B2147: Citrate synthase (si) (EC 2.3.3.1)	Burkholderia vietnamiensis G4 Gene: Bcep1808_4415: Citrate synthase (si) (EC 2.3.3.1)	2 Burkholderia xenovorans LB400 Gene: Bxe_B1134: Citrate synthase (si) (EC 2.3.3.1) Gene: Bxe_B2890: Citrate synthase (si) (EC 2.3.3.1)	Citrate synthase (si) (EC 2.3.3.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SdhR - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --