Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of SdhR in Burkholderia xenovorans LB400

Properties
Regulator type: Transcription factor
TF locus tag: Bxe_B2896
Regulator family: GntR/Others
Regulation mode:
Biological process: Tricarboxylic acid cycle
Effector:
Regulog: SdhR - Burkholderia
Statistics of regulated genes:
- Genes 12
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 34 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -137
Score: 5.6
Sequence: CGACGACTCTTATATAAGACATAAGA
Locus tag: Bxe_B1533
Name: acnB
Funciton: Aconitate hydratase 2 (EC 4.2.1.3)
acnB
Aconitate hydratase 2 (EC 4.2.1.3)

Position: -261
Score: 5.1
Sequence: CGTCAGGTCATCTATAAGACATCTGT
Locus tag: Bxe_B0532
Name: icd2
Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
icd2
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)

Position: -217
Score: 5.9
Sequence: CTCGTTGTCTTATATAAGATATAAGA
Locus tag: Bxe_A0797
Name: icd
Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
icd
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)

Position: -78
Score: 7.6
Sequence: TCTTATGTCTTATATAAGACATAACT
Locus tag: Bxe_B2896
Name: sdhR
Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: Bxe_B2895
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Bxe_B2894
Name: sdhD
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Bxe_B2893
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Bxe_B2892
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Bxe_B2891
Name: COG2938
Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: Bxe_B2890
Name: gltA
Funciton: Citrate synthase (si) (EC 2.3.3.1)
sdhR
Transcriptional regulator of TCA cycle, GntR family
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
COG2938
succinate dehydrogenase iron-sulfur subunit
gltA
Citrate synthase (si) (EC 2.3.3.1)

Position: -62
Score: 7.6
Sequence: AGTTATGTCTTATATAAGACATAAGA
Locus tag: Bxe_B2897
Name: null
Funciton: hypothetical protein
Locus tag: Bxe_B2898
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
hypothetical protein
mdh
Malate dehydrogenase (EC 1.1.1.37)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD