Regulon of GguR in Burkholderia cepacia AMMD
| Regulator type: | Transcription factor |
| TF locus tag: | Bamb_1043 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucarate utilization; Galactarate utilization |
| Effector: | |
| Regulog: | GguR - Burkholderia |
| Statistics of regulated genes: | |
| - Genes | 17 |
| - Operons | 10 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By trascription factor - GguR
- By TF family - GntR/Others
- By pathway - Glucarate utilization
- By pathway - Galactarate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -106
Score: 4.9 Sequence: CAGTCGTCAGATAACGT
Locus tag: Bamb_3566
Name: exuT Funciton: Hexuronate transporter, MFS family
Locus tag: Bamb_3565
Name: agl Funciton: Alpha-glucosidase (EC 3.2.1.20)
Locus tag: Bamb_3564
Name: omp Funciton: Outer membrane porin protein 32 precursor |
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exuT
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Hexuronate transporter, MFS family
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agl
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Alpha-glucosidase (EC 3.2.1.20)
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omp
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Outer membrane porin protein 32 precursor
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Position: -73
Score: 4.6 Sequence: ATGTAGTACGACGACGT
Locus tag: Bamb_4904
Name: pgl Funciton: Polygalacturonase (EC 3.2.1.15) |
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pgl
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Polygalacturonase (EC 3.2.1.15)
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Position: -240
Score: 5.2 Sequence: ACGTCGTCGTATGACAT
Position: -71
Score: 4.1 Sequence: ATGTCGTCGGCAGACAT
Locus tag: Bamb_4679
Name: kgsD Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
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kgsD
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Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
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Position: -107
Score: 5.2 Sequence: CAGTCGTCGGATGACTT
Locus tag: Bamb_1043
Name: gguR Funciton: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
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gguR
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Predicted D-glucarate or D-galactorate utilization regulator, GntR family
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Position: -153
Score: 4.8 Sequence: ATGTCATCGTACAACGA
Position: -48
Score: 4.9 Sequence: ATGTCGTATGATGACTA
Locus tag: Bamb_4675
Name: garD Funciton: D-galactarate dehydratase (EC 4.2.1.42) |
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garD
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D-galactarate dehydratase (EC 4.2.1.42)
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Position: -270
Score: 5.2 Sequence: AAGTCATCCGACGACTG
Locus tag: Bamb_1041
Name: gudD Funciton: Glucarate dehydratase (EC 4.2.1.40) |
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gudD
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Glucarate dehydratase (EC 4.2.1.40)
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Position: -341
Score: 4.7 Sequence: CAGTCATCCTATGACGA
Locus tag: Bamb_6123
Name: uxuP Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Bamb_6124
Name: uxuQ Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Bamb_6125
Name: uxuM Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Bamb_6126
Name: uxuF2 Funciton: Predicted uronate lactonase, PF10282 family
Locus tag: Bamb_6127
Name: mcp Funciton: methyl-accepting chemotaxis sensory transducer |
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uxuP
|
Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
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uxuQ
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Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
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uxuM
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Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
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uxuF2
|
Predicted uronate lactonase, PF10282 family
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mcp
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methyl-accepting chemotaxis sensory transducer
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Position: -207
Score: 4.9 Sequence: TAGTCATCATACGACAT
Position: -102
Score: 4.8 Sequence: TCGTTGTACGATGACAT
Locus tag: Bamb_4676
Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
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kdgD
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5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
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Position: -140
Score: 4.1 Sequence: ATGTCTGCCGACGACAT
Locus tag: Bamb_4680
Name: gudP Funciton: D-glucarate permease |
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gudP
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D-glucarate permease
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Position: -86
Score: 5.3 Sequence: ATGTCATACGACGACAT
Locus tag: Bamb_2220
Name: gguT Funciton: Predicted hexarate transporter
Locus tag: Bamb_2221
Name: uxuF Funciton: Predicted uronate lactonase, PF10282 family |
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gguT
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Predicted hexarate transporter
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uxuF
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Predicted uronate lactonase, PF10282 family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |