Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of GguR in Burkholderia cepacia AMMD

Properties
Regulator type: Transcription factor
TF locus tag: Bamb_1043
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucarate utilization; Galactarate utilization
Effector:
Regulog: GguR - Burkholderia
Statistics of regulated genes:
- Genes 17
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 67 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -106
Score: 4.9
Sequence: CAGTCGTCAGATAACGT
Locus tag: Bamb_3566
Name: exuT
Funciton: Hexuronate transporter, MFS family
Locus tag: Bamb_3565
Name: agl
Funciton: Alpha-glucosidase (EC 3.2.1.20)
Locus tag: Bamb_3564
Name: omp
Funciton: Outer membrane porin protein 32 precursor
Bamb_3566
exuT
Hexuronate transporter, MFS family
Bamb_3565
agl
Alpha-glucosidase (EC 3.2.1.20)
Bamb_3564
omp
Outer membrane porin protein 32 precursor
Position: -73
Score: 4.6
Sequence: ATGTAGTACGACGACGT
Locus tag: Bamb_4904
Name: pgl
Funciton: Polygalacturonase (EC 3.2.1.15)
Bamb_4904
pgl
Polygalacturonase (EC 3.2.1.15)
Position: -240
Score: 5.2
Sequence: ACGTCGTCGTATGACAT
Position: -71
Score: 4.1
Sequence: ATGTCGTCGGCAGACAT
Locus tag: Bamb_4679
Name: kgsD
Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
Bamb_4679
kgsD
Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
Position: -107
Score: 5.2
Sequence: CAGTCGTCGGATGACTT
Locus tag: Bamb_1043
Name: gguR
Funciton: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
Bamb_1043
gguR
Predicted D-glucarate or D-galactorate utilization regulator, GntR family
Position: -153
Score: 4.8
Sequence: ATGTCATCGTACAACGA
Position: -48
Score: 4.9
Sequence: ATGTCGTATGATGACTA
Locus tag: Bamb_4675
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Bamb_4675
garD
D-galactarate dehydratase (EC 4.2.1.42)
Position: -270
Score: 5.2
Sequence: AAGTCATCCGACGACTG
Locus tag: Bamb_1041
Name: gudD
Funciton: Glucarate dehydratase (EC 4.2.1.40)
Bamb_1041
gudD
Glucarate dehydratase (EC 4.2.1.40)
Position: -341
Score: 4.7
Sequence: CAGTCATCCTATGACGA
Locus tag: Bamb_6123
Name: uxuP
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Bamb_6124
Name: uxuQ
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Bamb_6125
Name: uxuM
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Bamb_6126
Name: uxuF2
Funciton: Predicted uronate lactonase, PF10282 family
Locus tag: Bamb_6127
Name: mcp
Funciton: methyl-accepting chemotaxis sensory transducer
Bamb_6123
uxuP
Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Bamb_6124
uxuQ
Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Bamb_6125
uxuM
Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Bamb_6126
uxuF2
Predicted uronate lactonase, PF10282 family
Bamb_6127
mcp
methyl-accepting chemotaxis sensory transducer
Position: -207
Score: 4.9
Sequence: TAGTCATCATACGACAT
Position: -102
Score: 4.8
Sequence: TCGTTGTACGATGACAT
Locus tag: Bamb_4676
Name: kdgD
Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Bamb_4676
kdgD
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Position: -140
Score: 4.1
Sequence: ATGTCTGCCGACGACAT
Locus tag: Bamb_4680
Name: gudP
Funciton: D-glucarate permease
Bamb_4680
gudP
D-glucarate permease
Position: -86
Score: 5.3
Sequence: ATGTCATACGACGACAT
Locus tag: Bamb_2220
Name: gguT
Funciton: Predicted hexarate transporter
Locus tag: Bamb_2221
Name: uxuF
Funciton: Predicted uronate lactonase, PF10282 family
Bamb_2220
gguT
Predicted hexarate transporter
Bamb_2221
uxuF
Predicted uronate lactonase, PF10282 family
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