Regulog GguR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucarate utilization; Galactarate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By trascription factor - GguR
- By TF family - GntR/Others
- By pathway - Glucarate utilization
- By pathway - Galactarate utilization
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | ||
| Burkholderia mallei ATCC 23344 | ||
| Burkholderia sp. 383 | 14 | 9 |
| Burkholderia cepacia AMMD | 17 | 10 |
| Burkholderia vietnamiensis G4 | 12 | 10 |
| Burkholderia glumae BGR1 | 16 | 10 |
| Burkholderia xenovorans LB400 | 12 | 6 |
| Burkholderia phymatum STM815 | 9 | 5 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| uxuP |
|
|
*
Burkholderia sp. 383 Site: position = -347 score = 4.83203 sequence = CAGTCATCCTATGACAA Gene: Bcep18194_C7436: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
*
Burkholderia cepacia AMMD Site: position = -341 score = 4.71251 sequence = CAGTCATCCTATGACGA Gene: Bamb_6123: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
*
Burkholderia vietnamiensis G4 Site: position = -329 score = 4.85371 sequence = CAGTCATCGGACAACTA Gene: Bcep1808_6572: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
*
Burkholderia glumae BGR1 Site: position = -497 score = 4.89854 sequence = CAGTCGTCTTATAACAT Gene: bglu_2g13770: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
*
Burkholderia xenovorans LB400 Site: position = -322 score = 5.24413 sequence = ATGTCGTCGTACAACAT Gene: Bxe_B1798: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
|
Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
| uxuQ |
|
|
Gene: Bcep18194_C7435: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
Gene: Bamb_6124: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
Gene: Bcep1808_6571: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
Gene: bglu_2g13760: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
Gene: Bxe_B1797: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
|
Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
| uxuM |
|
|
Gene: Bcep18194_C7434: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
Gene: Bamb_6125: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
Gene: Bcep1808_6570: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
Gene: bglu_2g13750: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
Gene: Bxe_B1796: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
|
Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
| uxuF2 |
|
|
|
Gene: Bamb_6126: Predicted uronate lactonase, PF10282 family |
|
|
|
|
Predicted uronate lactonase, PF10282 family |
| mcp |
|
|
|
Gene: Bamb_6127: methyl-accepting chemotaxis sensory transducer |
*
Burkholderia vietnamiensis G4 Site: position = -303 score = 4.83363 sequence = ATGTTATACGATGACAC Gene: Bcep1808_4374: methyl-accepting chemotaxis sensory transducer |
|
|
Gene: Bphy_5591: methyl-accepting chemotaxis sensory transducer |
methyl-accepting chemotaxis sensory transducer |
| omp |
|
|
|
|
|
|
Gene: Bxe_B1795: Outer membrane protein (porin) |
|
Outer membrane protein (porin) |
| CRON 2. | |||||||||
| garL |
|
|
|
|
|
|
|
*
Burkholderia phymatum STM815 Site: position = -77 score = 4.52301 sequence = CAGACATCCTATGACAT Site: position = -200 score = 4.50213 sequence = CGGTCATCGTACAACAA Gene: Bphy_6527: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
| garR |
|
|
|
|
|
|
|
Gene: Bphy_6528: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
| uxuF |
|
|
Gene: Bcep18194_A5499: Predicted uronate lactonase, PF10282 family |
Gene: Bamb_2221: Predicted uronate lactonase, PF10282 family |
*
Burkholderia vietnamiensis G4 Site: position = -239 score = 5.27833 sequence = ATGTCATACGACGACAT Gene: Bcep1808_2255: Predicted uronate lactonase, PF10282 family |
*
Burkholderia glumae BGR1 Site: position = -114 score = 4.86792 sequence = AAGTTATATGATGACGT Gene: bglu_2g05570: Predicted uronate lactonase, PF10282 family |
|
Gene: Bphy_6529: Predicted uronate lactonase, PF10282 family |
Predicted uronate lactonase, PF10282 family |
| gudD |
|
|
*
Burkholderia sp. 383 Site: position = -268 score = 5.16604 sequence = AAGTCATCCGACGACTG Gene: Bcep18194_A4275: Glucarate dehydratase (EC 4.2.1.40) |
*
Burkholderia cepacia AMMD Site: position = -270 score = 5.16604 sequence = AAGTCATCCGACGACTG Gene: Bamb_1041: Glucarate dehydratase (EC 4.2.1.40) |
*
Burkholderia vietnamiensis G4 Site: position = -333 score = 5.16604 sequence = AAGTCATCCGACGACTG Gene: Bcep1808_1081: Glucarate dehydratase (EC 4.2.1.40) |
*
Burkholderia glumae BGR1 Site: position = -207 score = 5.02574 sequence = ATGTCATCAGACAACGT Gene: bglu_2g00180: Glucarate dehydratase (EC 4.2.1.40) |
*
Burkholderia xenovorans LB400 Site: position = -106 score = 5.04202 sequence = CTGTCATCGTACAACAT Gene: Bxe_B0539: Glucarate dehydratase (EC 4.2.1.40) |
Gene: Bphy_6530: Glucarate dehydratase (EC 4.2.1.40) |
Glucarate dehydratase (EC 4.2.1.40) |
| kdgD |
|
|
*
Burkholderia sp. 383 Site: position = -198 score = 4.91333 sequence = TAGTCATCATACGACAT Site: position = -92 score = 4.84648 sequence = TCGTTGTACGATGACAT Gene: Bcep18194_B0332: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
*
Burkholderia cepacia AMMD Site: position = -207 score = 4.91333 sequence = TAGTCATCATACGACAT Site: position = -102 score = 4.84648 sequence = TCGTTGTACGATGACAT Gene: Bamb_4676: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
*
Burkholderia vietnamiensis G4 Site: position = -198 score = 4.91333 sequence = TAGTCATCATACGACAT Site: position = -92 score = 4.77071 sequence = GCGTTGTACGATGACAT Gene: Bcep1808_3561: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
*2
Burkholderia glumae BGR1 Site: position = -186 score = 4.89854 sequence = CAGTCATCATACAACAT Site: position = -75 score = 5.18752 sequence = ATGTTGTACGATGACAT Gene: bglu_2g03730: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) Gene: bglu_2g00190: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
*
Burkholderia xenovorans LB400 Site: position = -83 score = 4.84648 sequence = TTGTTGTACGATGACGT Site: position = -178 score = 5.068 sequence = ACGTCATCCTACAACAT Gene: Bxe_B1802: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
Gene: Bphy_6531: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
| gudP |
|
|
*
Burkholderia sp. 383 Site: position = -25 score = 5.03929 sequence = ACGTCATACGACGACGT Gene: Bcep18194_B0327: D-glucarate permease |
*
Burkholderia cepacia AMMD Site: position = -140 score = 4.14412 sequence = ATGTCTGCCGACGACAT Gene: Bamb_4680: D-glucarate permease |
*
Burkholderia vietnamiensis G4 Site: position = -26 score = 5.15881 sequence = ATGTCATACGACGACGT Gene: Bcep1808_3563: D-glucarate permease |
*
Burkholderia glumae BGR1 Site: position = -69 score = 5.22146 sequence = AAGTTGTACGACGACAT Gene: bglu_2g03700: D-glucarate permease |
Gene: Bxe_B1803: D-glucarate permease |
|
D-glucarate permease |
| gguT |
|
|
*
Burkholderia sp. 383 Site: position = -89 score = 5.27833 sequence = ATGTCATACGACGACAT Gene: Bcep18194_A5498: Predicted hexarate transporter |
*
Burkholderia cepacia AMMD Site: position = -86 score = 5.27833 sequence = ATGTCATACGACGACAT Gene: Bamb_2220: Predicted hexarate transporter |
|
|
|
|
Predicted hexarate transporter |
| CRON 3. | |||||||||
| kgsD |
|
|
*
Burkholderia sp. 383 Site: position = -239 score = 5.03929 sequence = ACGTCGTCGTATGACGT Gene: Bcep18194_B0328: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
*
Burkholderia cepacia AMMD Site: position = -240 score = 5.15881 sequence = ACGTCGTCGTATGACAT Site: position = -71 score = 4.14412 sequence = ATGTCGTCGGCAGACAT Gene: Bamb_4679: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
*
Burkholderia vietnamiensis G4 Site: position = -241 score = 5.15881 sequence = ACGTCGTCGTATGACAT Gene: Bcep1808_3562: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
*
Burkholderia glumae BGR1 Site: position = -212 score = 5.22146 sequence = ATGTCGTCGTACAACTT Gene: bglu_2g03710: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
*
Burkholderia xenovorans LB400 Site: position = -48 score = 4.86915 sequence = ATGTTGTAGGATGACCT Site: position = -160 score = 4.39013 sequence = AAGTCGTCGTATATCTA Gene: Bxe_B1805: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
*
Burkholderia phymatum STM815 Site: position = -48 score = 4.50213 sequence = TTGTTGTACGATGACCG Site: position = -171 score = 4.52301 sequence = ATGTCATAGGATGTCTG Gene: Bphy_6526: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
| CRON 4. | |||||||||
| garP |
|
|
|
|
|
|
|
*
Burkholderia phymatum STM815 Site: position = -92 score = 4.8835 sequence = ATGTCGTCAGACAACCT Site: position = -223 score = 4.95643 sequence = ACGTCGTCGTACAACTG Gene: Bphy_6596: D-galactarate permease |
D-galactarate permease |
| CRON 5. | |||||||||
| pgl |
|
|
|
*
Burkholderia cepacia AMMD Site: position = -73 score = 4.61137 sequence = ATGTAGTACGACGACGT Gene: Bamb_4904: Polygalacturonase (EC 3.2.1.15) |
*
Burkholderia vietnamiensis G4 Site: position = -70 score = 4.64131 sequence = ATGTGATACGACGACGT Gene: Bcep1808_3851: Polygalacturonase (EC 3.2.1.15) |
*
Burkholderia glumae BGR1 Site: position = -77 score = 5.1022 sequence = ATGTCATCGTATGACGT Gene: bglu_2g07210: Polygalacturonase (EC 3.2.1.15) |
|
|
Polygalacturonase (EC 3.2.1.15) |
| CRON 6. | |||||||||
| exuT |
|
|
*
Burkholderia sp. 383 Site: position = -196 score = 4.97709 sequence = CAGTCGTCAGATAACAT Gene: Bcep18194_B1871: Hexuronate transporter, MFS family |
*
Burkholderia cepacia AMMD Site: position = -106 score = 4.85757 sequence = CAGTCGTCAGATAACGT Gene: Bamb_3566: Hexuronate transporter, MFS family |
|
*
Burkholderia glumae BGR1 Site: position = -90 score = 4.56998 sequence = AAGTGGTACGATGACTG Site: position = -180 score = 4.49382 sequence = ACGTTGTCTGACGAGAT Gene: bglu_2g04250: Hexuronate transporter, MFS family |
|
Gene: Bphy_3128: Hexuronate transporter, MFS family |
Hexuronate transporter, MFS family |
| agl |
|
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Gene: Bcep18194_B1872: Alpha-glucosidase (EC 3.2.1.20) |
Gene: Bamb_3565: Alpha-glucosidase (EC 3.2.1.20) |
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Gene: bglu_2g04260: Alpha-glucosidase (EC 3.2.1.20) |
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Gene: Bphy_3127: Alpha-glucosidase (EC 3.2.1.20) |
Alpha-glucosidase (EC 3.2.1.20) |
| omp |
|
|
Gene: Bcep18194_B1873: Outer membrane porin protein 32 precursor |
Gene: Bamb_3564: Outer membrane porin protein 32 precursor |
|
Gene: bglu_2g04270: Outer membrane porin protein 32 precursor |
|
Gene: Bphy_3126: Outer membrane porin protein 32 precursor |
Outer membrane porin protein 32 precursor |
| CRON 7. | |||||||||
| garD |
|
|
*
Burkholderia sp. 383 Site: position = -154 score = 4.84648 sequence = ATGTCATCGTACAACGA Site: position = -48 score = 4.91333 sequence = ATGTCGTATGATGACTA Gene: Bcep18194_B0333: D-galactarate dehydratase (EC 4.2.1.42) |
*
Burkholderia cepacia AMMD Site: position = -48 score = 4.91333 sequence = ATGTCGTATGATGACTA Site: position = -153 score = 4.84648 sequence = ATGTCATCGTACAACGA Gene: Bamb_4675: D-galactarate dehydratase (EC 4.2.1.42) |
*
Burkholderia vietnamiensis G4 Site: position = -49 score = 4.91333 sequence = ATGTCGTATGATGACTA Site: position = -155 score = 4.77071 sequence = ATGTCATCGTACAACGC Gene: Bcep1808_3560: D-galactarate dehydratase (EC 4.2.1.42) |
*
Burkholderia glumae BGR1 Site: position = -164 score = 5.18752 sequence = ATGTCATCGTACAACAT Site: position = -53 score = 4.89854 sequence = ATGTTGTATGATGACTG Gene: bglu_2g03740: D-galactarate dehydratase (EC 4.2.1.42) |
*
Burkholderia xenovorans LB400 Site: position = -159 score = 4.84648 sequence = ACGTCATCGTACAACAA Site: position = -64 score = 5.068 sequence = ATGTTGTAGGATGACGT Gene: Bxe_B1801: D-galactarate dehydratase (EC 4.2.1.42) |
*
Burkholderia phymatum STM815 Site: position = -67 score = 4.77071 sequence = ATGTTGTACGATGACGC Gene: Bphy_6382: D-galactarate dehydratase (EC 4.2.1.42) |
D-galactarate dehydratase (EC 4.2.1.42) |
| udh |
|
|
Gene: Bcep18194_B2716: Uronate dehydrogenase (EC 1.1.1.203) |
Gene: Bamb_5236: Uronate dehydrogenase (EC 1.1.1.203) |
Gene: Bcep1808_3989: Uronate dehydrogenase (EC 1.1.1.203) |
*
Burkholderia glumae BGR1 Site: position = -94 score = 4.37422 sequence = CAGTCATCGTATAAGAT Gene: bglu_1g09950: Uronate dehydrogenase (EC 1.1.1.203) |
Gene: Bxe_B1800: Uronate dehydrogenase (EC 1.1.1.203) |
Gene: Bphy_5673: Uronate dehydrogenase (EC 1.1.1.203) |
Uronate dehydrogenase (EC 1.1.1.203) |
| uxuL |
|
|
|
|
|
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Gene: Bxe_B1799: Predicted glucuronolactone/galactarolactone lactonase |
|
Predicted glucuronolactone/galactarolactone lactonase |
| gguR |
|
|
*
Burkholderia sp. 383 Site: position = -107 score = 5.16604 sequence = CAGTCGTCGGATGACTT Gene: Bcep18194_A4276: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Burkholderia cepacia AMMD Site: position = -107 score = 5.16604 sequence = CAGTCGTCGGATGACTT Gene: Bamb_1043: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Burkholderia vietnamiensis G4 Site: position = -107 score = 5.16604 sequence = CAGTCGTCGGATGACTT Gene: Bcep1808_1082: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Burkholderia glumae BGR1 Site: position = -99 score = 5.10943 sequence = CAGTCATCGGATGACTT Gene: bglu_1g09940: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Burkholderia xenovorans LB400 Site: position = -70 score = 4.80287 sequence = CAGTCATCAGACGACGG Gene: Bxe_B1804: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Burkholderia phymatum STM815 Site: position = -51 score = 4.69554 sequence = GCGTTGTCGGACAACGT Gene: Bphy_6525: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |