Regulon of GguR in Burkholderia xenovorans LB400
| Regulator type: | Transcription factor |
| TF locus tag: | Bxe_B1804 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucarate utilization; Galactarate utilization |
| Effector: | |
| Regulog: | GguR - Burkholderia |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By trascription factor - GguR
- By TF family - GntR/Others
- By pathway - Glucarate utilization
- By pathway - Galactarate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -178
Score: 5.1 Sequence: ACGTCATCCTACAACAT
Position: -83
Score: 4.8 Sequence: TTGTTGTACGATGACGT
Locus tag: Bxe_B1802
Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Bxe_B1803
Name: gudP Funciton: D-glucarate permease |
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kdgD
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5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
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gudP
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D-glucarate permease
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Position: -159
Score: 4.8 Sequence: ACGTCATCGTACAACAA
Position: -64
Score: 5.1 Sequence: ATGTTGTAGGATGACGT
Locus tag: Bxe_B1801
Name: garD Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Bxe_B1800
Name: udh Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Bxe_B1799
Name: uxuL Funciton: Predicted glucuronolactone/galactarolactone lactonase |
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garD
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D-galactarate dehydratase (EC 4.2.1.42)
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udh
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Uronate dehydrogenase (EC 1.1.1.203)
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uxuL
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Predicted glucuronolactone/galactarolactone lactonase
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Position: -160
Score: 4.4 Sequence: AAGTCGTCGTATATCTA
Position: -48
Score: 4.9 Sequence: ATGTTGTAGGATGACCT
Locus tag: Bxe_B1805
Name: kgsD Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
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kgsD
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Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
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Position: -70
Score: 4.8 Sequence: CAGTCATCAGACGACGG
Locus tag: Bxe_B1804
Name: gguR Funciton: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
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gguR
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Predicted D-glucarate or D-galactorate utilization regulator, GntR family
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Position: -322
Score: 5.2 Sequence: ATGTCGTCGTACAACAT
Locus tag: Bxe_B1798
Name: uxuP Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Bxe_B1797
Name: uxuQ Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Bxe_B1796
Name: uxuM Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Bxe_B1795
Name: omp Funciton: Outer membrane protein (porin) |
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uxuP
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Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
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uxuQ
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Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
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uxuM
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Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
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omp
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Outer membrane protein (porin)
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Position: -106
Score: 5 Sequence: CTGTCATCGTACAACAT
Locus tag: Bxe_B0539
Name: gudD Funciton: Glucarate dehydratase (EC 4.2.1.40) |
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gudD
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Glucarate dehydratase (EC 4.2.1.40)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |