Regulon of HutC in Burkholderia cepacia AMMD
| Regulator type: | Transcription factor |
| TF locus tag: | Bamb_5835, Bamb_5462, Bamb_2210 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Histidine utilization |
| Effector: | cis-Urocanic acid |
| Regulog: | HutC - Burkholderia |
| Statistics of regulated genes: | |
| - Genes | 17 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By trascription factor - HutC
- By TF family - GntR/Others
- By effector - cis-Urocanic acid
- By pathway - Histidine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -150
Score: 5.7 Sequence: CAAGTTGTATATACAAGAAT
Locus tag: Bamb_1129
Name: COG1457 (CodB) Funciton: Permease, cytosine/purines, uracil, thiamine, allantoin family protein |
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COG1457 (CodB)
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Permease, cytosine/purines, uracil, thiamine, allantoin family protein
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Position: -137
Score: 4.4 Sequence: CGAGCGGTCTAGACTGCATC
Locus tag: Bamb_4897
Name: COG834 (HisJ) Funciton: ABC amino acid transporter, periplasmic ligand binding protein
Locus tag: Bamb_4896
Name: COG5285 Funciton: Phytanoyl-CoA dioxygenase |
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COG834 (HisJ)
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ABC amino acid transporter, periplasmic ligand binding protein
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COG5285
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Phytanoyl-CoA dioxygenase
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Position: -113
Score: 5.3 Sequence: AAAGTTGTATGTACAACTTG
Locus tag: Bamb_5463
Name: hisJ Funciton: Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1)
Locus tag: Bamb_5464
Name: hisQ Funciton: Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1)
Locus tag: Bamb_5465
Name: hisM Funciton: Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1)
Locus tag: Bamb_5466
Name: hisP Funciton: Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) |
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hisJ
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Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1)
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hisQ
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Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1)
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hisM
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Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1)
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hisP
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Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1)
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Position: -225
Score: 3.7 Sequence: GCATTTGTCTATACTTTTCC
Locus tag: Bamb_5462
Name: hutC Funciton: Histidine utilization repressor, GntR family |
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hutC
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Histidine utilization repressor, GntR family
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Position: -71
Score: 5.5 Sequence: GGGGTTGTCTAGACAAGTTC
Position: -26
Score: 5.6 Sequence: GAACTTGTCTAGACAGGATT
Locus tag: Bamb_2211
Name: hutH Funciton: Histidine ammonia-lyase (EC 4.3.1.3)
Locus tag: Bamb_2210
Name: hutC Funciton: Histidine utilization repressor, GntR family
Locus tag: Bamb_2209
Name: hutU Funciton: Urocanate hydratase (EC 4.2.1.49)
Locus tag: Bamb_2208
Name: hutD Funciton: Conserved hypothetical protein related to histidine degradation
Locus tag: Bamb_2207
Name: hutI Funciton: Imidazolonepropionase (EC 3.5.2.7)
Locus tag: Bamb_2206
Name: hutF Funciton: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
Locus tag: Bamb_2205
Name: hutG Funciton: N-formylglutamate deformylase (EC 3.5.1.68) |
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hutH
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Histidine ammonia-lyase (EC 4.3.1.3)
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hutC
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Histidine utilization repressor, GntR family
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hutU
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Urocanate hydratase (EC 4.2.1.49)
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hutD
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Conserved hypothetical protein related to histidine degradation
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hutI
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Imidazolonepropionase (EC 3.5.2.7)
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hutF
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Formiminoglutamic iminohydrolase (EC 3.5.3.13)
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hutG
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N-formylglutamate deformylase (EC 3.5.1.68)
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Position: -148
Score: 5.6 Sequence: AATCCTGTCTAGACAAGTTC
Position: -103
Score: 5.5 Sequence: GAACTTGTCTAGACAACCCC
Locus tag: Bamb_2212
Name: COG834 (HisJ) Funciton: ABC amino acid transporter, periplasmic ligand binding protein |
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COG834 (HisJ)
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ABC amino acid transporter, periplasmic ligand binding protein
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Position: -77
Score: 5.9 Sequence: CAAGTTGTATAGACAACTTG
Locus tag: Bamb_1095
Name: hisT Funciton: Histidine transport protein (permease) |
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hisT
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Histidine transport protein (permease)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |