Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Ralstonia metallidurans CH34

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 8 8
TF CueR Copper ion, (Cu+) Copper resistance 8 4
TF Dnr Nitric oxide Denitrification 2 2
TF FadP Fatty acid degradation 16 14
TF FdsR Formate Formate oxydation 2 2
TF Fur Iron ion, (Fe2+) Iron homeostasis 19 20
TF GabR Gamma-aminobutyric acid Gamma-aminobutyrate utilization 3 2
TF GguR Glucarate utilization; Galactarate utilization 6 8
TF H16_A0963 1 1
TF H16_A0970 2 1
TF H16_A2655 Metabolite transport 2 2
TF H16_B1468 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 3 4
TF HrcA Heat shock Heat shock response 2 2
TF HutC cis-Urocanic acid Histidine utilization 3 4
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 2 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 1 2
TF LexA DNA damage SOS response 10 12
TF LiuQ Branched-chain amino acid degradation 2 4
TF LiuR Branched-chain amino acid degradation 7 9
TF LldR L-lactate Lactate utilization 2 2
TF MerR Mercury ion, (Hg2+) Mercury resistance 7 7
TF MetR Homocysteine Methionine biosynthesis 2 2
TF MlnR Malonate metabolism 1 1
TF ModE Molybdate Molybdenum homeostasis 2 2
TF ModE3 Tungsten Tungsten homeostasis 2 2
TF NorR Nitric oxide Nitrosative stress response 2 5
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 3
TF NsrR Nitric oxide Nitrosative stress response 5 4
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 5 6
TF OapR Gamma-aminobutyrate utilization 1 1
TF PaaR Phenylacetyl-CoA Phenylacetic acid degradation 4 3
TF PdxR2 Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 2 2
TF PhnF Phosphonate utilization 2 2
TF PsrA Oleate Fatty acid degradation 2 1
TF RALTA_A0216 1 1
TF RSc1790 Sugar utilization 1 1
TF Rmet_4647 3 2
TF Rmet_5631 Glycolate utilization; Lactate utilization 3 4
TF RutR Uracil Pyrimidine utilization 1 1
TF SdaR Glucuronate utilization; Glucarate utilization; Galactarate utilization 1 1
TF SdhR Tricarboxylic acid cycle 7 8
TF SoxR Paraquat Superoxide stress response 1 1
TF UraR Uracil Pyrimidine utilization 3 5
TF YrdX3 2 2
TF YrdX3(2) 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 4
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 1 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA Glycine Glycine Glycine metabolism 2 4
RNA SAH_riboswitch S-adenosylhomocysteine Methionine metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 1 1
RNA sucA Tricarboxylic acid cycle 1 1
RNA yybP-ykoY 1 1
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