Regulon of SdhR in Ralstonia metallidurans CH34

Properties
Regulator type:	Transcription factor
TF locus tag:	Rmet_2488
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Regulog:	SdhR - Ralstonia
Statistics of regulated genes:
- Genes	15
- Operons	7
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 41 sites [see more]

Member of regulog collections

By taxonomy - Ralstonia
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Regulated operons
	Locus Tag	Name	Function
Position: -134 Score: 6.1 Sequence: TCTTATGTCTTATATAAGACCTTGCC Locus tag: Rmet_4737 Name: aceA2 Funciton: Isocitrate lyase (EC 4.1.3.1)
	Rmet_4737	aceA2	Isocitrate lyase (EC 4.1.3.1)
Position: -78 Score: 7.9 Sequence: TCATATGTCTTATATAAGACATAAGA Locus tag: Rmet_2488 Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family Locus tag: Rmet_2487 Name: null Funciton: hypothetical protein Locus tag: Rmet_2486 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: Rmet_2485 Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein Locus tag: Rmet_2484 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: Rmet_2483 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: Rmet_2482 Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit Locus tag: Rmet_2481 Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
	Rmet_2488	sdhR	Transcriptional regulator of TCA cycle, GntR family
	Rmet_2487		hypothetical protein
	Rmet_2486	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	Rmet_2485	sdhD	Succinate dehydrogenase hydrophobic membrane anchor protein
	Rmet_2484	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	Rmet_2483	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	Rmet_2482	COG2938	succinate dehydrogenase iron-sulfur subunit
	Rmet_2481	gltA	Citrate synthase (si) (EC 2.3.3.1)
Position: -339 Score: 7.9 Sequence: TCTTATGTCTTATATAAGACATATGA Locus tag: Rmet_2489 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: Rmet_2490 Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6)
	Rmet_2489	mdh	Malate dehydrogenase (EC 1.1.1.37)
	Rmet_2490	citE	Citrate lyase beta chain (EC 4.1.3.6)
Position: -137 Score: 6.1 Sequence: TATCGACTCTTATATAAGATATAAGA Position: -130 Score: 5.8 Sequence: TCTTATATAAGATATAAGACATTTGA Locus tag: Rmet_5296 Name: acnB Funciton: Aconitate hydratase 2 (EC 4.2.1.3)
	Rmet_5296	acnB	Aconitate hydratase 2 (EC 4.2.1.3)
Position: -129 Score: 5.7 Sequence: TCTACACTCTTATATAAGACACATGA Locus tag: Rmet_1385 Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1)
	Rmet_1385	aceA	Isocitrate lyase (EC 4.1.3.1)
Position: -56 Score: 6.3 Sequence: TCTTATATCTTATATAAGACTAGAAT Locus tag: Rmet_3612 Name: tam Funciton: Trans-aconitate 2-methyltransferase (EC 2.1.1.144)
	Rmet_3612	tam	Trans-aconitate 2-methyltransferase (EC 2.1.1.144)
Position: -167 Score: 5.2 Sequence: TCTTGGGTCTTATATAAGACTGACAT Locus tag: Rmet_2895 Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
	Rmet_2895	icd	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of SdhR in Ralstonia metallidurans CH34

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --