Regulon of SdhR in Ralstonia metallidurans CH34
| Regulator type: | Transcription factor |
| TF locus tag: | Rmet_2488 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Tricarboxylic acid cycle |
| Effector: | |
| Regulog: | SdhR - Ralstonia |
| Statistics of regulated genes: | |
| - Genes | 15 |
| - Operons | 7 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By TF family - GntR/Others
- By pathway - Tricarboxylic acid cycle
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -134
Score: 6.1 Sequence: TCTTATGTCTTATATAAGACCTTGCC
Locus tag: Rmet_4737
Name: aceA2 Funciton: Isocitrate lyase (EC 4.1.3.1) |
|||
|
aceA2
|
Isocitrate lyase (EC 4.1.3.1)
|
||
|
Position: -78
Score: 7.9 Sequence: TCATATGTCTTATATAAGACATAAGA
Locus tag: Rmet_2488
Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: Rmet_2487
Name: null Funciton: hypothetical protein
Locus tag: Rmet_2486
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Rmet_2485
Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Rmet_2484
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Rmet_2483
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Rmet_2482
Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: Rmet_2481
Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1) |
|||
|
sdhR
|
Transcriptional regulator of TCA cycle, GntR family
|
||
|
hypothetical protein
|
|||
|
sdhC
|
Succinate dehydrogenase cytochrome b-556 subunit
|
||
|
sdhD
|
Succinate dehydrogenase hydrophobic membrane anchor protein
|
||
|
sdhA
|
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
|
||
|
sdhB
|
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
|
||
|
COG2938
|
succinate dehydrogenase iron-sulfur subunit
|
||
|
gltA
|
Citrate synthase (si) (EC 2.3.3.1)
|
||
|
Position: -339
Score: 7.9 Sequence: TCTTATGTCTTATATAAGACATATGA
Locus tag: Rmet_2489
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Rmet_2490
Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6) |
|||
|
mdh
|
Malate dehydrogenase (EC 1.1.1.37)
|
||
|
citE
|
Citrate lyase beta chain (EC 4.1.3.6)
|
||
|
Position: -137
Score: 6.1 Sequence: TATCGACTCTTATATAAGATATAAGA
Position: -130
Score: 5.8 Sequence: TCTTATATAAGATATAAGACATTTGA
Locus tag: Rmet_5296
Name: acnB Funciton: Aconitate hydratase 2 (EC 4.2.1.3) |
|||
|
acnB
|
Aconitate hydratase 2 (EC 4.2.1.3)
|
||
|
Position: -129
Score: 5.7 Sequence: TCTACACTCTTATATAAGACACATGA
Locus tag: Rmet_1385
Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1) |
|||
|
aceA
|
Isocitrate lyase (EC 4.1.3.1)
|
||
|
Position: -56
Score: 6.3 Sequence: TCTTATATCTTATATAAGACTAGAAT
Locus tag: Rmet_3612
Name: tam Funciton: Trans-aconitate 2-methyltransferase (EC 2.1.1.144) |
|||
|
tam
|
Trans-aconitate 2-methyltransferase (EC 2.1.1.144)
|
||
|
Position: -167
Score: 5.2 Sequence: TCTTGGGTCTTATATAAGACTGACAT
Locus tag: Rmet_2895
Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
|||
|
icd
|
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |