Regulog SdhR - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Tricarboxylic acid cycle |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By TF family - GntR/Others
- By pathway - Tricarboxylic acid cycle
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | 12 | 6 |
| Ralstonia eutropha H16 | 14 | 6 |
| Ralstonia eutropha JMP134 | 13 | 5 |
| Ralstonia metallidurans CH34 | 15 | 7 |
| Ralstonia pickettii 12J | 16 | 8 |
| Ralstonia solanacearum GMI1000 | 12 | 4 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| mdh |
*
Cupriavidus taiwanensis Site: position = -360 score = 7.89101 sequence = TCTTATGTCTTATATAAGACATATGA Gene: RALTA_A2133: Malate dehydrogenase (EC 1.1.1.37) |
*
Ralstonia eutropha H16 Site: position = -379 score = 7.89101 sequence = TCTTATGTCTTATATAAGACATATGA Gene: H16_A2634: Malate dehydrogenase (EC 1.1.1.37) |
*
Ralstonia eutropha JMP134 Site: position = -327 score = 7.89101 sequence = TCTTATGTCTTATATAAGACATATGA Gene: Reut_A2327: Malate dehydrogenase (EC 1.1.1.37) |
*
Ralstonia metallidurans CH34 Site: position = -339 score = 7.89101 sequence = TCTTATGTCTTATATAAGACATATGA Gene: Rmet_2489: Malate dehydrogenase (EC 1.1.1.37) |
*
Ralstonia pickettii 12J Site: position = -298 score = 7.66319 sequence = TCTTATGTCTTATATAAGACAGAAGA Gene: Rpic_2153: Malate dehydrogenase (EC 1.1.1.37) |
*
Ralstonia solanacearum GMI1000 Site: position = -296 score = 7.66319 sequence = TCTTATGTCTTATATAAGACAGAAGA Gene: RSc1998: Malate dehydrogenase (EC 1.1.1.37) |
Malate dehydrogenase (EC 1.1.1.37) |
| citE |
Gene: RALTA_A2134: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: H16_A2635: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: Reut_A2328: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: Rmet_2490: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: Rpic_2154: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: RS03567: Citrate lyase beta chain (EC 4.1.3.6) |
Citrate lyase beta chain (EC 4.1.3.6) |
| prpB2 |
|
|
|
|
Gene: Rpic_2155: 2-methylisocitrate lyase (EC 4.1.3.30) |
Gene: RSc2000: 2-methylisocitrate lyase (EC 4.1.3.30) |
2-methylisocitrate lyase (EC 4.1.3.30) |
| prpC2 |
Gene: RALTA_A2135: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: H16_A2636: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: Reut_A2329: 2-methylcitrate synthase (EC 2.3.3.5) |
|
|
|
2-methylcitrate synthase (EC 2.3.3.5) |
| CRON 2. | |||||||
| aceA2 |
*
Cupriavidus taiwanensis Site: position = -132 score = 7.4564 sequence = TCTTATGTCTTATATAAGACATAACC Gene: RALTA_B0267: Isocitrate lyase (EC 4.1.3.1) |
*
Ralstonia eutropha H16 Site: position = -132 score = 6.08122 sequence = TCTTATGTCTTATATAAGACTTTGCC Gene: H16_A2211: Isocitrate lyase (EC 4.1.3.1) |
*
Ralstonia eutropha JMP134 Site: position = -134 score = 6.50745 sequence = TCTTATGTCTTATATAAGACTGACGC Gene: Reut_A0384: Isocitrate lyase (EC 4.1.3.1) |
*
Ralstonia metallidurans CH34 Site: position = -134 score = 6.08122 sequence = TCTTATGTCTTATATAAGACCTTGCC Gene: Rmet_4737: Isocitrate lyase (EC 4.1.3.1) |
*2
Ralstonia pickettii 12J Site: position = -135 score = 6.19258 sequence = TCTTATGTCTTATATAAGACCTTGCT Gene: Rpic_0542: Isocitrate lyase (EC 4.1.3.1) Site: position = -135 score = 6.19258 sequence = TCTTATGTCTTATATAAGACCTTGCT Gene: Rpic_4801: Isocitrate lyase (EC 4.1.3.1) |
|
Isocitrate lyase (EC 4.1.3.1) |
| CRON 3. | |||||||
| acnB |
*
Cupriavidus taiwanensis Site: position = -22 score = 5.81286 sequence = TCTTATATAAGATATAAGACATTTGA Site: position = -29 score = 6.2371 sequence = GATGAACTCTTATATAAGATATAAGA Gene: RALTA_B0366: Aconitate hydratase 2 (EC 4.2.1.3) |
*
Ralstonia eutropha H16 Site: position = -104 score = 6.55779 sequence = TCTTCACTCTTATATAAGATATAAGA Site: position = -97 score = 5.81286 sequence = TCTTATATAAGATATAAGACATTTGA Gene: H16_B0568: Aconitate hydratase 2 (EC 4.2.1.3) |
Gene: Reut_B3464: Aconitate hydratase 2 (EC 4.2.1.3) |
*
Ralstonia metallidurans CH34 Site: position = -130 score = 5.81286 sequence = TCTTATATAAGATATAAGACATTTGA Site: position = -137 score = 6.05368 sequence = TATCGACTCTTATATAAGATATAAGA Gene: Rmet_5296: Aconitate hydratase 2 (EC 4.2.1.3) |
*2
Ralstonia pickettii 12J Site: position = -127 score = 5.81286 sequence = TCTTATATAAGATATAAGACATTTGA Site: position = -134 score = 6.18902 sequence = GTTTAACTCTTATATAAGATATAAGA Gene: Rpic_4479: Aconitate hydratase 2 (EC 4.2.1.3) Site: position = -128 score = 5.81286 sequence = TCTTATATAAGATATAAGACATTTGA Site: position = -135 score = 6.16356 sequence = GCTTGACTCTTATATAAGATATAAGA Gene: Rpic_4553: Aconitate hydratase 2 (EC 4.2.1.3) |
Gene: RSp0332: Aconitate hydratase 2 (EC 4.2.1.3) |
Aconitate hydratase 2 (EC 4.2.1.3) |
| CRON 4. | |||||||
| icd |
*
Cupriavidus taiwanensis Site: position = -168 score = 6.32163 sequence = TCTTGTGTCTTATATAAGACTGAATC Gene: RALTA_A2531: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Ralstonia eutropha H16 Site: position = -168 score = 6.26805 sequence = TCTTGTGTCTTATATAAGACTGAAGG Gene: H16_A3056: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Ralstonia eutropha JMP134 Site: position = -158 score = 5.82186 sequence = TCTTGTGTCTTATATAAGACTGAAAG Gene: Reut_A2756: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Ralstonia metallidurans CH34 Site: position = -167 score = 5.21196 sequence = TCTTGGGTCTTATATAAGACTGACAT Gene: Rmet_2895: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Ralstonia pickettii 12J Site: position = -194 score = 5.4928 sequence = TCTTGTGTCTTATATAAGAGTTGCGG Gene: Rpic_2752: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Ralstonia solanacearum GMI1000 Site: position = -168 score = 5.4928 sequence = TCTTGTGTCTTATATAAGAGTTGCGG Gene: RSc2490: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
| CRON 5. | |||||||
| tam |
Gene: RALTA_A3215: Trans-aconitate 2-methyltransferase (EC 2.1.1.144) |
Gene: H16_A0107: Trans-aconitate 2-methyltransferase (EC 2.1.1.144) |
Gene: Reut_A3459: Trans-aconitate 2-methyltransferase (EC 2.1.1.144) |
*
Ralstonia metallidurans CH34 Site: position = -56 score = 6.25418 sequence = TCTTATATCTTATATAAGACTAGAAT Gene: Rmet_3612: Trans-aconitate 2-methyltransferase (EC 2.1.1.144) |
Gene: Rpic_3620: Trans-aconitate 2-methyltransferase (EC 2.1.1.144) |
|
Trans-aconitate 2-methyltransferase (EC 2.1.1.144) |
| CRON 6. | |||||||
| aceA |
*
Cupriavidus taiwanensis Site: position = -132 score = 5.35941 sequence = TCTACACTCTTATATAAGACACAGGA Gene: RALTA_A1766: Isocitrate lyase (EC 4.1.3.1) |
*
Ralstonia eutropha H16 Site: position = -128 score = 5.22302 sequence = TCTACACTCTTATATAAGACTCATGA Gene: H16_A2227: Isocitrate lyase (EC 4.1.3.1) |
*
Ralstonia eutropha JMP134 Site: position = -124 score = 5.43954 sequence = CCTACACTCTTATATAAGACAAATGA Gene: Reut_A1961: Isocitrate lyase (EC 4.1.3.1) |
*
Ralstonia metallidurans CH34 Site: position = -129 score = 5.71204 sequence = TCTACACTCTTATATAAGACACATGA Gene: Rmet_1385: Isocitrate lyase (EC 4.1.3.1) |
*
Ralstonia pickettii 12J Site: position = -127 score = 6.18368 sequence = TCTACACTCTTATATAAGACATATGA Gene: Rpic_1232: Isocitrate lyase (EC 4.1.3.1) |
*
Ralstonia solanacearum GMI1000 Site: position = -104 score = 6.18368 sequence = TCTACACTCTTATATAAGACATATGA Gene: RSc1358: Isocitrate lyase (EC 4.1.3.1) |
Isocitrate lyase (EC 4.1.3.1) |
| CRON 7. | |||||||
| sdhR |
*
Cupriavidus taiwanensis Site: position = -254 score = 7.89101 sequence = TCATATGTCTTATATAAGACATAAGA Gene: RALTA_A2132: Transcriptional regulator of TCA cycle, GntR family |
*
Ralstonia eutropha H16 Site: position = -77 score = 7.89101 sequence = TCATATGTCTTATATAAGACATAAGA Gene: H16_A2633: Transcriptional regulator of TCA cycle, GntR family |
*
Ralstonia eutropha JMP134 Site: position = -77 score = 7.89101 sequence = TCATATGTCTTATATAAGACATAAGA Gene: Reut_A2326: Transcriptional regulator of TCA cycle, GntR family |
*
Ralstonia metallidurans CH34 Site: position = -78 score = 7.89101 sequence = TCATATGTCTTATATAAGACATAAGA Gene: Rmet_2488: Transcriptional regulator of TCA cycle, GntR family |
*
Ralstonia pickettii 12J Site: position = -80 score = 7.66319 sequence = TCTTCTGTCTTATATAAGACATAAGA Gene: Rpic_2152: Transcriptional regulator of TCA cycle, GntR family |
*
Ralstonia solanacearum GMI1000 Site: position = -62 score = 7.66319 sequence = TCTTCTGTCTTATATAAGACATAAGA Gene: RS03565: Transcriptional regulator of TCA cycle, GntR family |
Transcriptional regulator of TCA cycle, GntR family |
| Rmet_2487 |
|
|
|
Gene: Rmet_2487: hypothetical protein |
|
|
hypothetical protein |
| sdhC |
Gene: RALTA_A2131: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: H16_A2632: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: Reut_A2325: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: Rmet_2486: Succinate dehydrogenase cytochrome b-556 subunit |
2
Ralstonia pickettii 12J Gene: Rpic_2151: Succinate dehydrogenase cytochrome b-556 subunit Gene: Rpic_4356: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: RSc1996: Succinate dehydrogenase cytochrome b-556 subunit |
Succinate dehydrogenase cytochrome b-556 subunit |
| sdhD |
Gene: RALTA_A2130: Succinate dehydrogenase hydrophobic membrane anchor protein |
Gene: H16_A2631: Succinate dehydrogenase hydrophobic membrane anchor protein |
Gene: Reut_A2324: Succinate dehydrogenase hydrophobic membrane anchor protein |
Gene: Rmet_2485: Succinate dehydrogenase hydrophobic membrane anchor protein |
2
Ralstonia pickettii 12J Gene: Rpic_2150: Succinate dehydrogenase hydrophobic membrane anchor protein Gene: Rpic_4357: Succinate dehydrogenase hydrophobic membrane anchor protein |
Gene: RSc1995: Succinate dehydrogenase hydrophobic membrane anchor protein |
Succinate dehydrogenase hydrophobic membrane anchor protein |
| sdhA |
Gene: RALTA_A2129: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: H16_A2630: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: Reut_A2323: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: Rmet_2484: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
2
Ralstonia pickettii 12J Gene: Rpic_2149: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Gene: Rpic_4358: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: RSc1994: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
| sdhB |
Gene: RALTA_A2128: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: H16_A2629: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: Reut_A2322: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: Rmet_2483: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
2
Ralstonia pickettii 12J Gene: Rpic_2148: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Gene: Rpic_4359: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: RSc1993: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
| COG2938 |
Gene: RALTA_A2127: succinate dehydrogenase iron-sulfur subunit |
Gene: H16_A2628: succinate dehydrogenase iron-sulfur subunit |
Gene: Reut_A2321: succinate dehydrogenase iron-sulfur subunit |
Gene: Rmet_2482: succinate dehydrogenase iron-sulfur subunit |
Gene: Rpic_2147: succinate dehydrogenase iron-sulfur subunit |
Gene: RS03560: succinate dehydrogenase iron-sulfur subunit |
succinate dehydrogenase iron-sulfur subunit |
| gltA |
Gene: RALTA_A2126: Citrate synthase (si) (EC 2.3.3.1) |
Gene: H16_A2627: Citrate synthase (si) (EC 2.3.3.1) |
Gene: Reut_A2320: Citrate synthase (si) (EC 2.3.3.1) |
Gene: Rmet_2481: Citrate synthase (si) (EC 2.3.3.1) |
Gene: Rpic_2146: Citrate synthase (si) (EC 2.3.3.1) |
Gene: RSc1991: Citrate synthase (si) (EC 2.3.3.1) |
Citrate synthase (si) (EC 2.3.3.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |