Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of SdhR in Ralstonia pickettii 12J

Properties
Regulator type: Transcription factor
TF locus tag: Rpic_2152
Regulator family: GntR/Others
Regulation mode:
Biological process: Tricarboxylic acid cycle
Effector:
Regulog: SdhR - Ralstonia
Statistics of regulated genes:
- Genes 16
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 41 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -80
Score: 7.7
Sequence: TCTTCTGTCTTATATAAGACATAAGA
Locus tag: Rpic_2152
Name: sdhR
Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: Rpic_2151
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Rpic_2150
Name: sdhD
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Rpic_2149
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Rpic_2148
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Rpic_2147
Name: COG2938
Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: Rpic_2146
Name: gltA
Funciton: Citrate synthase (si) (EC 2.3.3.1)
Rpic_2152
sdhR
Transcriptional regulator of TCA cycle, GntR family
Rpic_2151
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
Rpic_2150
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein
Rpic_2149
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Rpic_2148
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Rpic_2147
COG2938
succinate dehydrogenase iron-sulfur subunit
Rpic_2146
gltA
Citrate synthase (si) (EC 2.3.3.1)
Position: -298
Score: 7.7
Sequence: TCTTATGTCTTATATAAGACAGAAGA
Locus tag: Rpic_2153
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Rpic_2154
Name: citE
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: Rpic_2155
Name: prpB2
Funciton: 2-methylisocitrate lyase (EC 4.1.3.30)
Rpic_2153
mdh
Malate dehydrogenase (EC 1.1.1.37)
Rpic_2154
citE
Citrate lyase beta chain (EC 4.1.3.6)
Rpic_2155
prpB2
2-methylisocitrate lyase (EC 4.1.3.30)
Position: -135
Score: 6.2
Sequence: TCTTATGTCTTATATAAGACCTTGCT
Locus tag: Rpic_0542
Name: aceA2
Funciton: Isocitrate lyase (EC 4.1.3.1)
Rpic_0542
aceA2
Isocitrate lyase (EC 4.1.3.1)
Position: -135
Score: 6.2
Sequence: TCTTATGTCTTATATAAGACCTTGCT
Locus tag: Rpic_4801
Name: aceA2
Funciton: Isocitrate lyase (EC 4.1.3.1)
Rpic_4801
aceA2
Isocitrate lyase (EC 4.1.3.1)
Position: -127
Score: 6.2
Sequence: TCTACACTCTTATATAAGACATATGA
Locus tag: Rpic_1232
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Rpic_1232
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -194
Score: 5.5
Sequence: TCTTGTGTCTTATATAAGAGTTGCGG
Locus tag: Rpic_2752
Name: icd
Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Rpic_2752
icd
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Position: -134
Score: 6.2
Sequence: GTTTAACTCTTATATAAGATATAAGA
Position: -127
Score: 5.8
Sequence: TCTTATATAAGATATAAGACATTTGA
Locus tag: Rpic_4479
Name: acnB
Funciton: Aconitate hydratase 2 (EC 4.2.1.3)
Rpic_4479
acnB
Aconitate hydratase 2 (EC 4.2.1.3)
Position: -135
Score: 6.2
Sequence: GCTTGACTCTTATATAAGATATAAGA
Position: -128
Score: 5.8
Sequence: TCTTATATAAGATATAAGACATTTGA
Locus tag: Rpic_4553
Name: acnB
Funciton: Aconitate hydratase 2 (EC 4.2.1.3)
Rpic_4553
acnB
Aconitate hydratase 2 (EC 4.2.1.3)
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