Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of SdhR in Ralstonia solanacearum GMI1000

Properties
Regulator type: Transcription factor
TF locus tag: RS03565
Regulator family: GntR/Others
Regulation mode:
Biological process: Tricarboxylic acid cycle
Effector:
Regulog: SdhR - Ralstonia
Statistics of regulated genes:
- Genes 12
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 41 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -296
Score: 7.7
Sequence: TCTTATGTCTTATATAAGACAGAAGA
Locus tag: RSc1998
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: RS03567
Name: citE
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: RSc2000
Name: prpB2
Funciton: 2-methylisocitrate lyase (EC 4.1.3.30)
mdh
Malate dehydrogenase (EC 1.1.1.37)
citE
Citrate lyase beta chain (EC 4.1.3.6)
prpB2
2-methylisocitrate lyase (EC 4.1.3.30)

Position: -62
Score: 7.7
Sequence: TCTTCTGTCTTATATAAGACATAAGA
Locus tag: RS03565
Name: sdhR
Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: RSc1996
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: RSc1995
Name: sdhD
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: RSc1994
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: RSc1993
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: RS03560
Name: COG2938
Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: RSc1991
Name: gltA
Funciton: Citrate synthase (si) (EC 2.3.3.1)
sdhR
Transcriptional regulator of TCA cycle, GntR family
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
COG2938
succinate dehydrogenase iron-sulfur subunit
gltA
Citrate synthase (si) (EC 2.3.3.1)

Position: -104
Score: 6.2
Sequence: TCTACACTCTTATATAAGACATATGA
Locus tag: RSc1358
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
aceA
Isocitrate lyase (EC 4.1.3.1)

Position: -168
Score: 5.5
Sequence: TCTTGTGTCTTATATAAGAGTTGCGG
Locus tag: RSc2490
Name: icd
Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
icd
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD