Regulon of SdhR in Ralstonia solanacearum GMI1000

Properties
Regulator type:	Transcription factor
TF locus tag:	RS03565
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Regulog:	SdhR - Ralstonia
Statistics of regulated genes:
- Genes	12
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 41 sites [see more]

Member of regulog collections

By taxonomy - Ralstonia
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Regulated operons
	Locus Tag	Name	Function
Position: -296 Score: 7.7 Sequence: TCTTATGTCTTATATAAGACAGAAGA Locus tag: RSc1998 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: RS03567 Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6) Locus tag: RSc2000 Name: prpB2 Funciton: 2-methylisocitrate lyase (EC 4.1.3.30)
	RSc1998	mdh	Malate dehydrogenase (EC 1.1.1.37)
	RS03567	citE	Citrate lyase beta chain (EC 4.1.3.6)
	RSc2000	prpB2	2-methylisocitrate lyase (EC 4.1.3.30)
Position: -62 Score: 7.7 Sequence: TCTTCTGTCTTATATAAGACATAAGA Locus tag: RS03565 Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family Locus tag: RSc1996 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: RSc1995 Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein Locus tag: RSc1994 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: RSc1993 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: RS03560 Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit Locus tag: RSc1991 Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
	RS03565	sdhR	Transcriptional regulator of TCA cycle, GntR family
	RSc1996	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	RSc1995	sdhD	Succinate dehydrogenase hydrophobic membrane anchor protein
	RSc1994	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	RSc1993	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	RS03560	COG2938	succinate dehydrogenase iron-sulfur subunit
	RSc1991	gltA	Citrate synthase (si) (EC 2.3.3.1)
Position: -104 Score: 6.2 Sequence: TCTACACTCTTATATAAGACATATGA Locus tag: RSc1358 Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1)
	RSc1358	aceA	Isocitrate lyase (EC 4.1.3.1)
Position: -168 Score: 5.5 Sequence: TCTTGTGTCTTATATAAGAGTTGCGG Locus tag: RSc2490 Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
	RSc2490	icd	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD