Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Ralstonia metallidurans CH34

Properties
Regulator type: Transcription factor
TF locus tag: Rmet_0102
Regulator family: MerR
Regulation mode:
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Ralstonia
Statistics of regulated genes:
- Genes 17
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 57 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -56
Score: 6.2
Sequence: ATTGACGTTAACGTTAGC
Position: -50
Score: 4.8
Sequence: GTTAACGTTAGCGTCAAG
Locus tag: Rmet_0101
Name: null
Funciton: Metallo-beta-lactamase family protein
Rmet_0101
Metallo-beta-lactamase family protein
Position: -44
Score: 6.6
Sequence: ATTGACGTTAACGTAAAC
Locus tag: Rmet_0531
Name: paaH
Funciton: 3-hydroxyacyl-CoA dehydrogenase
Rmet_0531
paaH
3-hydroxyacyl-CoA dehydrogenase
Position: -87
Score: 6.6
Sequence: ATTGACGTTTACGTAAAC
Position: -81
Score: 5.3
Sequence: GTTTACGTAAACGTCAAT
Locus tag: Rmet_0103
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: Rmet_0104
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Rmet_0105
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Rmet_0106
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Rmet_0107
Name: null
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Rmet_0108
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: Rmet_0109
Name: null
Funciton: 2-Hydroxychromene-2-carboxylate isomerase
Locus tag: Rmet_0110
Name: null
Funciton: Putative phosphatase YieH
Locus tag: Rmet_0111
Name: null
Funciton: hypothetical protein
Locus tag: Rmet_0112
Name: null
Funciton: Dienelactone hydrolase or related enzyme
Locus tag: Rmet_0113
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Rmet_0103
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Rmet_0104
aceK
Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Rmet_0105
cah
Carbonic anhydrase (EC 4.2.1.1)
Rmet_0106
ivdA
Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Rmet_0107
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Rmet_0108
ivdC
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Rmet_0109
2-Hydroxychromene-2-carboxylate isomerase
Rmet_0110
Putative phosphatase YieH
Rmet_0111
hypothetical protein
Rmet_0112
Dienelactone hydrolase or related enzyme
Rmet_0113
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Position: -100
Score: 6.2
Sequence: CTTGACGCTAACGTTAAC
Position: -94
Score: 5.1
Sequence: GCTAACGTTAACGTCAAT
Locus tag: Rmet_0102
Name: liuR
Funciton: Transcriptional regulator, MerR family
Rmet_0102
liuR
Transcriptional regulator, MerR family
Position: -104
Score: 5.7
Sequence: CCTTACGTTAACGTAAAC
Position: -98
Score: 4.5
Sequence: GTTAACGTAAACGTCATA
Locus tag: Rmet_0210
Name: mcm
Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2)
Locus tag: Rmet_0211
Name: hit
Funciton: Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)
Locus tag: Rmet_0212
Name: paaH1
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Rmet_0210
mcm
Methylmalonyl-CoA mutase (EC 5.4.99.2)
Rmet_0211
hit
Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)
Rmet_0212
paaH1
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
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