Profile of regulator LiuR in Ralstonia
Properties
| Regulator family: |
MerR |
| Regulation mode: |
|
| Biological process: |
Branched-chain amino acid degradation |
| Effector: |
|
| Regulog: |
LiuR - Ralstonia |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Ralstonia solanacearum GMI1000
|
|
RS05766 |
paaH |
-53 |
5.2 |
TATGACGTTGACGTAAAC |
|
RS05766 |
paaH |
-47 |
5.7 |
GTTGACGTAAACGTCAAT |
|
RS00697 |
serA |
-34 |
6 |
CTTGACGTATACGTCAAC |
|
RS00669 |
mcm |
-113 |
6.6 |
GTTGACGTTTACGTAAAC |
|
RS03248 |
RSc0281 |
-77 |
6.3 |
ATTGACGTTTACGTTAGC |
|
RS03248 |
RSc0281 |
-71 |
4.9 |
GTTTACGTTAGCGTCAAA |
|
RS03247 |
liuR |
-101 |
4.8 |
GCTAACGTAAACGTCAAT |
|
RS03247 |
liuR |
-107 |
6.1 |
TTTGACGCTAACGTAAAC |
|
RS03246 |
liuA |
-131 |
5.3 |
GTTTACGTAAACGTCAAT |
|
RS03246 |
liuA |
-137 |
6.6 |
GTTGACGTTTACGTAAAC |
|
Ralstonia pickettii 12J
|
|
Rpic_0131 |
null |
-85 |
5.1 |
GTTTACGTTAGCGTCAAT |
|
Rpic_0131 |
null |
-91 |
6.3 |
ATTGACGTTTACGTTAGC |
|
Rpic_0129 |
liuA |
-144 |
5.3 |
GTTTACGTAAACGTCAAT |
|
Rpic_2811 |
paaH |
-50 |
4 |
GCGAACGTAAACGTCAAG |
|
Rpic_2811 |
paaH |
-56 |
5.9 |
CTTGACGCGAACGTAAAC |
|
Rpic_0115 |
serA |
-41 |
5.7 |
CTTGACGTATACGTCAAT |
|
Rpic_0089 |
mcm |
-118 |
4.8 |
GTTGACGAGTGCGTCAAC |
|
Rpic_0129 |
liuA |
-150 |
6.6 |
ATTGACGTTTACGTAAAC |
|
Rpic_0130 |
liuR |
-111 |
4.8 |
GCTAACGTAAACGTCAAT |
|
Rpic_0130 |
liuR |
-117 |
6.4 |
ATTGACGCTAACGTAAAC |
|
Ralstonia metallidurans CH34
|
|
Rmet_0210 |
mcm |
-98 |
4.5 |
GTTAACGTAAACGTCATA |
|
Rmet_0210 |
mcm |
-104 |
5.7 |
CCTTACGTTAACGTAAAC |
|
Rmet_0531 |
paaH |
-44 |
6.6 |
ATTGACGTTAACGTAAAC |
|
Rmet_0101 |
null |
-50 |
4.8 |
GTTAACGTTAGCGTCAAG |
|
Rmet_0101 |
null |
-56 |
6.2 |
ATTGACGTTAACGTTAGC |
|
Rmet_0103 |
liuA |
-81 |
5.3 |
GTTTACGTAAACGTCAAT |
|
Rmet_0103 |
liuA |
-87 |
6.6 |
ATTGACGTTTACGTAAAC |
|
Rmet_0102 |
liuR |
-100 |
6.2 |
CTTGACGCTAACGTTAAC |
|
Rmet_0102 |
liuR |
-94 |
5.1 |
GCTAACGTTAACGTCAAT |
|
Ralstonia eutropha JMP134
|
|
Reut_A0589 |
paaH |
-56 |
6.6 |
GTTGACGTTTACGTAAAC |
|
Reut_A0589 |
paaH |
-50 |
4.5 |
GTTTACGTAAACGGCAGT |
|
Reut_A0132 |
null |
-149 |
5.5 |
GTTTACGTTAGCGTCAAC |
|
Reut_A0132 |
null |
-155 |
6.2 |
GTTGACGTTTACGTTAGC |
|
Reut_A0133 |
liuR |
-99 |
6.4 |
GTTGACGCTAACGTAAAC |
|
Reut_A0133 |
liuR |
-93 |
5.1 |
GCTAACGTAAACGTCAAC |
|
Reut_A0134 |
paaI |
-52 |
5.3 |
GTTTACGTAAACGTCAAT |
|
Reut_A0134 |
paaI |
-58 |
6.6 |
ATTGACGTTTACGTAAAC |
|
Ralstonia eutropha H16
|
|
H16_A0602 |
paaH |
-47 |
5.1 |
GTTTACGTAAACGGCAAC |
|
H16_A0602 |
paaH |
-53 |
6.6 |
ATTGACGTTTACGTAAAC |
|
H16_A0280 |
mcm |
-133 |
4.2 |
GTTAACGTCAACGTCATA |
|
H16_A0280 |
mcm |
-139 |
6 |
CTTTACGTTAACGTCAAC |
|
H16_A0166 |
paaI |
-87 |
5.3 |
GTTTACGTAAACGTCAAT |
|
H16_A0166 |
paaI |
-93 |
6.6 |
ATTGACGTTTACGTAAAC |
|
H16_A0164 |
h16_A0164 |
-130 |
6.3 |
ATTGACGTTTACGTTAGC |
|
H16_A0164 |
h16_A0164 |
-124 |
5.5 |
GTTTACGTTAGCGTCAAC |
|
H16_A0165 |
liuR |
-93 |
4.8 |
GCTAACGTAAACGTCAAT |
|
H16_A0165 |
liuR |
-99 |
6.4 |
GTTGACGCTAACGTAAAC |
|
Cupriavidus taiwanensis
|
|
RALTA_A0218 |
mcm |
-136 |
6.1 |
ATTTACGTTAACGTCAAC |
|
RALTA_A0558 |
paaH |
-44 |
6.1 |
CTTAACGTTTACGTAAAC |
|
RALTA_A0558 |
paaH |
-38 |
5.3 |
GTTTACGTAAACGGAAAC |
|
RALTA_A0109 |
paaI |
-84 |
5.5 |
GTTTACGTAAACGTAAAT |
|
RALTA_A0109 |
paaI |
-90 |
6.6 |
ATTGACGTTTACGTAAAC |
|
RALTA_A0218 |
mcm |
-130 |
4.2 |
GTTAACGTCAACGTCATA |
|
RALTA_A0107 |
null |
-132 |
6.2 |
GTTGACGTTTACGTTAGC |
|
RALTA_A0107 |
null |
-126 |
5.5 |
GTTTACGTTAGCGTCAAC |
|
RALTA_A0108 |
liuR |
-92 |
5.1 |
GCTAACGTAAACGTCAAC |
|
RALTA_A0108 |
liuR |
-98 |
6.4 |
GTTGACGCTAACGTAAAC |
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Regulatory Sites
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