Regulog LiuR - Ralstonia

Properties
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:
Biological process:	Branched-chain amino acid degradation
Effector:
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 57 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Ralstonia
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Ralstonia solanacearum GMI1000	12	6
Ralstonia pickettii 12J	12	6
Ralstonia metallidurans CH34	17	5
Ralstonia eutropha JMP134	16	4
Ralstonia eutropha H16	20	5
Cupriavidus taiwanensis	20	5

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
serA	* Ralstonia solanacearum GMI1000 Site: position = -34 score = 6.04197 sequence = CTTGACGTATACGTCAAC Gene: RS00697: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	* Ralstonia pickettii 12J Site: position = -41 score = 5.66568 sequence = CTTGACGTATACGTCAAT Gene: Rpic_0115: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Ralstonia metallidurans CH34 Gene: Rmet_0118: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Ralstonia eutropha JMP134 Gene: Reut_A0152: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Ralstonia eutropha H16 Gene: H16_A0185: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Cupriavidus taiwanensis Gene: RALTA_A0128: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
liuE	Ralstonia solanacearum GMI1000 Gene: RS00696: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Ralstonia pickettii 12J Gene: Rpic_0114: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Ralstonia metallidurans CH34 Gene: Rmet_0607: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Ralstonia eutropha JMP134 Gene: Reut_A0153: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Ralstonia eutropha H16 Gene: H16_A0186: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Cupriavidus taiwanensis Gene: RALTA_A0129: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
dcp	Ralstonia solanacearum GMI1000 Gene: RS00695: Peptidyl-dipeptidase dcp (EC 3.4.15.5)	Ralstonia pickettii 12J Gene: Rpic_0113: Peptidyl-dipeptidase dcp (EC 3.4.15.5)	Ralstonia metallidurans CH34 Gene: Rmet_0119: Peptidyl-dipeptidase dcp (EC 3.4.15.5)	Ralstonia eutropha JMP134 Gene: Reut_A0154: Peptidyl-dipeptidase dcp (EC 3.4.15.5)	Ralstonia eutropha H16 Gene: H16_A0187: Peptidyl-dipeptidase dcp (EC 3.4.15.5)	Cupriavidus taiwanensis Gene: RALTA_A0130: Peptidyl-dipeptidase dcp (EC 3.4.15.5)	Peptidyl-dipeptidase dcp (EC 3.4.15.5)
RSc0259	Ralstonia solanacearum GMI1000 Gene: RS00694: Protein of unknown function DUF1289	Ralstonia pickettii 12J Gene: Rpic_0112: Protein of unknown function DUF1289	Ralstonia metallidurans CH34 Gene: Rmet_0120: Protein of unknown function DUF1289	Ralstonia eutropha JMP134 Gene: Reut_A0156: Protein of unknown function DUF1289	Ralstonia eutropha H16 Gene: H16_A0189: Protein of unknown function DUF1289	Cupriavidus taiwanensis Gene: RALTA_A0132: Protein of unknown function DUF1289	Protein of unknown function DUF1289
RSc0258	Ralstonia solanacearum GMI1000 Gene: RS00693: Beta-lactamase domain protein	Ralstonia pickettii 12J Gene: Rpic_0111: Beta-lactamase domain protein	Ralstonia metallidurans CH34 Gene: Rmet_0121: Beta-lactamase domain protein	Ralstonia eutropha JMP134 Gene: Reut_A0157: Beta-lactamase domain protein	Ralstonia eutropha H16 Gene: H16_A0190: Beta-lactamase domain protein	Cupriavidus taiwanensis Gene: RALTA_A0133: Beta-lactamase domain protein	Beta-lactamase domain protein

CRON 2.
mcm	* Ralstonia solanacearum GMI1000 Site: position = -113 score = 6.58437 sequence = GTTGACGTTTACGTAAAC Gene: RS00669: Methylmalonyl-CoA mutase (EC 5.4.99.2)	* Ralstonia pickettii 12J Site: position = -118 score = 4.8267 sequence = GTTGACGAGTGCGTCAAC Gene: Rpic_0089: Methylmalonyl-CoA mutase (EC 5.4.99.2)	* Ralstonia metallidurans CH34 Site: position = -98 score = 4.47423 sequence = GTTAACGTAAACGTCATA Site: position = -104 score = 5.73815 sequence = CCTTACGTTAACGTAAAC Gene: Rmet_0210: Methylmalonyl-CoA mutase (EC 5.4.99.2)	Ralstonia eutropha JMP134 Gene: Reut_A0253: Methylmalonyl-CoA mutase (EC 5.4.99.2)	* Ralstonia eutropha H16 Site: position = -133 score = 4.22532 sequence = GTTAACGTCAACGTCATA Site: position = -139 score = 6.00081 sequence = CTTTACGTTAACGTCAAC Gene: H16_A0280: Methylmalonyl-CoA mutase (EC 5.4.99.2)	* Cupriavidus taiwanensis Site: position = -136 score = 6.093 sequence = ATTTACGTTAACGTCAAC Site: position = -130 score = 4.22532 sequence = GTTAACGTCAACGTCATA Gene: RALTA_A0218: Methylmalonyl-CoA mutase (EC 5.4.99.2)	Methylmalonyl-CoA mutase (EC 5.4.99.2)
hit	Ralstonia solanacearum GMI1000 Gene: RSp0494: Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)	Ralstonia pickettii 12J Gene: Rpic_4702: Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)	Ralstonia metallidurans CH34 Gene: Rmet_0211: Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)	Ralstonia eutropha JMP134 Gene: Reut_A0254: Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)	Ralstonia eutropha H16 Gene: H16_A0281: Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)	Cupriavidus taiwanensis Gene: RALTA_A0219: Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)	Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)
paaH1	Ralstonia solanacearum GMI1000 Gene: RSc0244: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Ralstonia pickettii 12J Gene: Rpic_0090: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Ralstonia metallidurans CH34 Gene: Rmet_0212: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Ralstonia eutropha JMP134 Gene: Reut_A0255: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Ralstonia eutropha H16 Gene: H16_A0282: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Cupriavidus taiwanensis Gene: RALTA_A0220: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)

CRON 3.
RSc0281	* Ralstonia solanacearum GMI1000 Site: position = -77 score = 6.28835 sequence = ATTGACGTTTACGTTAGC Site: position = -71 score = 4.87467 sequence = GTTTACGTTAGCGTCAAA Gene: RS03248: Metallo-beta-lactamase family protein	* Ralstonia pickettii 12J Site: position = -85 score = 5.07446 sequence = GTTTACGTTAGCGTCAAT Site: position = -91 score = 6.28835 sequence = ATTGACGTTTACGTTAGC Gene: Rpic_0131: Metallo-beta-lactamase family protein	* Ralstonia metallidurans CH34 Site: position = -50 score = 4.75469 sequence = GTTAACGTTAGCGTCAAG Site: position = -56 score = 6.24719 sequence = ATTGACGTTAACGTTAGC Gene: Rmet_0101: Metallo-beta-lactamase family protein	* Ralstonia eutropha JMP134 Site: position = -149 score = 5.45074 sequence = GTTTACGTTAGCGTCAAC Site: position = -155 score = 6.23303 sequence = GTTGACGTTTACGTTAGC Gene: Reut_A0132: Metallo-beta-lactamase family protein	* Ralstonia eutropha H16 Site: position = -130 score = 6.28835 sequence = ATTGACGTTTACGTTAGC Site: position = -124 score = 5.45074 sequence = GTTTACGTTAGCGTCAAC Gene: H16_A0164: Metallo-beta-lactamase family protein	* Cupriavidus taiwanensis Site: position = -132 score = 6.23303 sequence = GTTGACGTTTACGTTAGC Site: position = -126 score = 5.45074 sequence = GTTTACGTTAGCGTCAAC Gene: RALTA_A0107: Metallo-beta-lactamase family protein	Metallo-beta-lactamase family protein

CRON 4.
liuR	* Ralstonia solanacearum GMI1000 Site: position = -101 score = 4.77323 sequence = GCTAACGTAAACGTCAAT Site: position = -107 score = 6.09005 sequence = TTTGACGCTAACGTAAAC Gene: RS03247: Transcriptional regulator, MerR family	* Ralstonia pickettii 12J Site: position = -111 score = 4.77323 sequence = GCTAACGTAAACGTCAAT Site: position = -117 score = 6.41819 sequence = ATTGACGCTAACGTAAAC Gene: Rpic_0130: Transcriptional regulator, MerR family	* Ralstonia metallidurans CH34 Site: position = -100 score = 6.18381 sequence = CTTGACGCTAACGTTAAC Site: position = -94 score = 5.08875 sequence = GCTAACGTTAACGTCAAT Gene: Rmet_0102: Transcriptional regulator, MerR family	* Ralstonia eutropha JMP134 Site: position = -99 score = 6.36287 sequence = GTTGACGCTAACGTAAAC Site: position = -93 score = 5.14952 sequence = GCTAACGTAAACGTCAAC Gene: Reut_A0133: Transcriptional regulator, MerR family	* Ralstonia eutropha H16 Site: position = -93 score = 4.77323 sequence = GCTAACGTAAACGTCAAT Site: position = -99 score = 6.36287 sequence = GTTGACGCTAACGTAAAC Gene: H16_A0165: Transcriptional regulator, MerR family	* Cupriavidus taiwanensis Site: position = -92 score = 5.14952 sequence = GCTAACGTAAACGTCAAC Site: position = -98 score = 6.36287 sequence = GTTGACGCTAACGTAAAC Gene: RALTA_A0108: Transcriptional regulator, MerR family	Transcriptional regulator, MerR family

CRON 5.
paaI	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	* Ralstonia eutropha JMP134 Site: position = -52 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Site: position = -58 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: Reut_A0134: Phenylacetic acid degradation-related protein	* Ralstonia eutropha H16 Site: position = -87 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Site: position = -93 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: H16_A0166: Phenylacetic acid degradation-related protein	* Cupriavidus taiwanensis Site: position = -84 score = 5.53588 sequence = GTTTACGTAAACGTAAAT Site: position = -90 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: RALTA_A0109: Phenylacetic acid degradation-related protein	Phenylacetic acid degradation-related protein
liuA	* Ralstonia solanacearum GMI1000 Site: position = -131 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Site: position = -137 score = 6.58437 sequence = GTTGACGTTTACGTAAAC Gene: RS03246: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)	* Ralstonia pickettii 12J Site: position = -144 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Site: position = -150 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: Rpic_0129: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)	* Ralstonia metallidurans CH34 Site: position = -81 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Site: position = -87 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: Rmet_0103: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Ralstonia eutropha JMP134 Gene: Reut_A0135: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Ralstonia eutropha H16 Gene: H16_A0167: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Cupriavidus taiwanensis Gene: RALTA_A0110: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
aceK	Ralstonia solanacearum GMI1000 Gene: RSc0278: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Ralstonia pickettii 12J Gene: Rpic_0128: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Ralstonia metallidurans CH34 Gene: Rmet_0104: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Ralstonia eutropha JMP134 Gene: Reut_A0136: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Ralstonia eutropha H16 Gene: H16_A0168: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Cupriavidus taiwanensis Gene: RALTA_A0111: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
cah	Ralstonia solanacearum GMI1000 Gene: RS03244: Carbonic anhydrase (EC 4.2.1.1)	Ralstonia pickettii 12J Gene: Rpic_0127: Carbonic anhydrase (EC 4.2.1.1)	Ralstonia metallidurans CH34 Gene: Rmet_0105: Carbonic anhydrase (EC 4.2.1.1)	Ralstonia eutropha JMP134 Gene: Reut_A0137: Carbonic anhydrase (EC 4.2.1.1)	Ralstonia eutropha H16 Gene: H16_A0169: Carbonic anhydrase (EC 4.2.1.1)	Cupriavidus taiwanensis Gene: RALTA_A0112: Carbonic anhydrase (EC 4.2.1.1)	Carbonic anhydrase (EC 4.2.1.1)
ivdA	Ralstonia solanacearum GMI1000 Gene: RSc0276: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Ralstonia pickettii 12J Gene: Rpic_0126: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Ralstonia metallidurans CH34 Gene: Rmet_0106: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Ralstonia eutropha JMP134 Gene: Reut_A0138: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Ralstonia eutropha H16 Gene: H16_A0170: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Cupriavidus taiwanensis Gene: RALTA_A0113: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Rmet_0107	Ralstonia solanacearum GMI1000 Gene: RS03242: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Ralstonia pickettii 12J Gene: Rpic_0125: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Ralstonia metallidurans CH34 Gene: Rmet_0107: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Ralstonia eutropha JMP134 Gene: Reut_A0139: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Ralstonia eutropha H16 Gene: H16_A0171: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Cupriavidus taiwanensis Gene: RALTA_A0114: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
ivdC	Ralstonia solanacearum GMI1000 Gene: RS03241: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Ralstonia pickettii 12J Gene: Rpic_0124: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Ralstonia metallidurans CH34 Gene: Rmet_0108: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Ralstonia eutropha JMP134 Gene: Reut_A0140: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Ralstonia eutropha H16 Gene: H16_A0172: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Cupriavidus taiwanensis Gene: RALTA_A0115: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Rmet_0109	Ralstonia solanacearum GMI1000 Gene: RS03240: 2-Hydroxychromene-2-carboxylate isomerase	Ralstonia pickettii 12J Gene: Rpic_0123: 2-Hydroxychromene-2-carboxylate isomerase	Ralstonia metallidurans CH34 Gene: Rmet_0109: 2-Hydroxychromene-2-carboxylate isomerase	Ralstonia eutropha JMP134 Gene: Reut_A0141: 2-Hydroxychromene-2-carboxylate isomerase	Ralstonia eutropha H16 Gene: H16_A0173: 2-Hydroxychromene-2-carboxylate isomerase	Cupriavidus taiwanensis Gene: RALTA_A0116: 2-Hydroxychromene-2-carboxylate isomerase	2-Hydroxychromene-2-carboxylate isomerase
Rmet_0110	Ralstonia solanacearum GMI1000 Gene: RS03238: Putative phosphatase YieH	Ralstonia pickettii 12J Gene: Rpic_0122: Putative phosphatase YieH	Ralstonia metallidurans CH34 Gene: Rmet_0110: Putative phosphatase YieH	Ralstonia eutropha JMP134 Gene: Reut_A0142: Putative phosphatase YieH	Ralstonia eutropha H16 Gene: H16_A0174: Putative phosphatase YieH	Cupriavidus taiwanensis Gene: RALTA_A0117: Putative phosphatase YieH	Putative phosphatase YieH
Rmet_0111	Ralstonia solanacearum GMI1000 Gene: RS03237: hypothetical protein	Ralstonia pickettii 12J Gene: Rpic_0121: hypothetical protein	Ralstonia metallidurans CH34 Gene: Rmet_0111: hypothetical protein	Ralstonia eutropha JMP134 Gene: Reut_A0143: hypothetical protein	Ralstonia eutropha H16 Gene: H16_A0175: hypothetical protein	Cupriavidus taiwanensis Gene: RALTA_A0118: hypothetical protein	hypothetical protein
h16_A0176	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_A0144: Maleylacetoacetate isomerase (EC 5.2.1.2) / Glutathione S-transferase	Ralstonia eutropha H16 Gene: H16_A0176: Maleylacetoacetate isomerase (EC 5.2.1.2) / Glutathione S-transferase	Cupriavidus taiwanensis Gene: RALTA_A0119: Maleylacetoacetate isomerase (EC 5.2.1.2) / Glutathione S-transferase	Maleylacetoacetate isomerase (EC 5.2.1.2) / Glutathione S-transferase
liuB	Ralstonia solanacearum GMI1000 Gene: RS03236: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Ralstonia pickettii 12J Gene: Rpic_0120: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_A0145: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Ralstonia eutropha H16 Gene: H16_A0177: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Cupriavidus taiwanensis Gene: RALTA_A0120: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Rmet_0112	Ralstonia solanacearum GMI1000 Gene: RS03235: Dienelactone hydrolase or related enzyme	Ralstonia pickettii 12J Gene: Rpic_0119: Dienelactone hydrolase or related enzyme	Ralstonia metallidurans CH34 Gene: Rmet_0112: Dienelactone hydrolase or related enzyme	Ralstonia eutropha JMP134 Gene: Reut_A0146: Dienelactone hydrolase or related enzyme	Ralstonia eutropha H16 Gene: H16_A0178: Dienelactone hydrolase or related enzyme	Cupriavidus taiwanensis Gene: RALTA_A0121: Dienelactone hydrolase or related enzyme	Dienelactone hydrolase or related enzyme
liuC	Ralstonia solanacearum GMI1000 Gene: RS03234: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Ralstonia pickettii 12J Gene: Rpic_0118: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Ralstonia metallidurans CH34 Gene: Rmet_0113: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Ralstonia eutropha JMP134	Ralstonia eutropha H16 Gene: H16_A0179: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Cupriavidus taiwanensis Gene: RALTA_A0122: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)

CRON 6.
paaH	* Ralstonia solanacearum GMI1000 Site: position = -53 score = 5.23171 sequence = TATGACGTTGACGTAAAC Site: position = -47 score = 5.66139 sequence = GTTGACGTAAACGTCAAT Gene: RS05766: 3-hydroxyacyl-CoA dehydrogenase	* Ralstonia pickettii 12J Site: position = -50 score = 3.9865 sequence = GCGAACGTAAACGTCAAG Site: position = -56 score = 5.8905 sequence = CTTGACGCGAACGTAAAC Gene: Rpic_2811: 3-hydroxyacyl-CoA dehydrogenase	* Ralstonia metallidurans CH34 Site: position = -44 score = 6.59853 sequence = ATTGACGTTAACGTAAAC Gene: Rmet_0531: 3-hydroxyacyl-CoA dehydrogenase	* Ralstonia eutropha JMP134 Site: position = -56 score = 6.58437 sequence = GTTGACGTTTACGTAAAC Site: position = -50 score = 4.54979 sequence = GTTTACGTAAACGGCAGT Gene: Reut_A0589: 3-hydroxyacyl-CoA dehydrogenase	* Ralstonia eutropha H16 Site: position = -47 score = 5.13522 sequence = GTTTACGTAAACGGCAAC Site: position = -53 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: H16_A0602: 3-hydroxyacyl-CoA dehydrogenase	* Cupriavidus taiwanensis Site: position = -44 score = 6.112 sequence = CTTAACGTTTACGTAAAC Site: position = -38 score = 5.32523 sequence = GTTTACGTAAACGGAAAC Gene: RALTA_A0558: 3-hydroxyacyl-CoA dehydrogenase	3-hydroxyacyl-CoA dehydrogenase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LiuR - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --