Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Cupriavidus taiwanensis

Properties
Regulator type: Transcription factor
TF locus tag: RALTA_A0108
Regulator family: MerR
Regulation mode:
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Ralstonia
Statistics of regulated genes:
- Genes 20
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 57 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -98
Score: 6.4
Sequence: GTTGACGCTAACGTAAAC
Position: -92
Score: 5.1
Sequence: GCTAACGTAAACGTCAAC
Locus tag: RALTA_A0108
Name: liuR
Funciton: Transcriptional regulator, MerR family
liuR
Transcriptional regulator, MerR family

Position: -136
Score: 6.1
Sequence: ATTTACGTTAACGTCAAC
Position: -130
Score: 4.2
Sequence: GTTAACGTCAACGTCATA
Locus tag: RALTA_A0218
Name: mcm
Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2)
Locus tag: RALTA_A0219
Name: hit
Funciton: Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)
Locus tag: RALTA_A0220
Name: paaH1
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
mcm
Methylmalonyl-CoA mutase (EC 5.4.99.2)
hit
Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)
paaH1
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)

Position: -132
Score: 6.2
Sequence: GTTGACGTTTACGTTAGC
Position: -126
Score: 5.5
Sequence: GTTTACGTTAGCGTCAAC
Locus tag: RALTA_A0107
Name: null
Funciton: Metallo-beta-lactamase family protein
Metallo-beta-lactamase family protein

Position: -90
Score: 6.6
Sequence: ATTGACGTTTACGTAAAC
Position: -84
Score: 5.5
Sequence: GTTTACGTAAACGTAAAT
Locus tag: RALTA_A0109
Name: paaI
Funciton: Phenylacetic acid degradation-related protein
Locus tag: RALTA_A0110
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: RALTA_A0111
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: RALTA_A0112
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: RALTA_A0113
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: RALTA_A0114
Name: null
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: RALTA_A0115
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: RALTA_A0116
Name: null
Funciton: 2-Hydroxychromene-2-carboxylate isomerase
Locus tag: RALTA_A0117
Name: null
Funciton: Putative phosphatase YieH
Locus tag: RALTA_A0118
Name: null
Funciton: hypothetical protein
Locus tag: RALTA_A0119
Name: null
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) / Glutathione S-transferase
Locus tag: RALTA_A0120
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: RALTA_A0121
Name: null
Funciton: Dienelactone hydrolase or related enzyme
Locus tag: RALTA_A0122
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
paaI
Phenylacetic acid degradation-related protein
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
aceK
Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
cah
Carbonic anhydrase (EC 4.2.1.1)
ivdA
Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
ivdC
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
2-Hydroxychromene-2-carboxylate isomerase
Putative phosphatase YieH
hypothetical protein
Maleylacetoacetate isomerase (EC 5.2.1.2) / Glutathione S-transferase
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Dienelactone hydrolase or related enzyme
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)

Position: -44
Score: 6.1
Sequence: CTTAACGTTTACGTAAAC
Position: -38
Score: 5.3
Sequence: GTTTACGTAAACGGAAAC
Locus tag: RALTA_A0558
Name: paaH
Funciton: 3-hydroxyacyl-CoA dehydrogenase
paaH
3-hydroxyacyl-CoA dehydrogenase
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