Regulon of LiuR in Cupriavidus taiwanensis
| Regulator type: | Transcription factor |
| TF locus tag: | RALTA_A0108 |
| Regulator family: | MerR |
| Regulation mode: | |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Ralstonia |
| Statistics of regulated genes: | |
| - Genes | 20 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Ralstonia
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -98
Score: 6.4 Sequence: GTTGACGCTAACGTAAAC
Position: -92
Score: 5.1 Sequence: GCTAACGTAAACGTCAAC
Locus tag: RALTA_A0108
Name: liuR Funciton: Transcriptional regulator, MerR family |
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liuR
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Transcriptional regulator, MerR family
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Position: -136
Score: 6.1 Sequence: ATTTACGTTAACGTCAAC
Position: -130
Score: 4.2 Sequence: GTTAACGTCAACGTCATA
Locus tag: RALTA_A0218
Name: mcm Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2)
Locus tag: RALTA_A0219
Name: hit Funciton: Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)
Locus tag: RALTA_A0220
Name: paaH1 Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
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mcm
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Methylmalonyl-CoA mutase (EC 5.4.99.2)
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hit
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Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)
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paaH1
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3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
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Position: -132
Score: 6.2 Sequence: GTTGACGTTTACGTTAGC
Position: -126
Score: 5.5 Sequence: GTTTACGTTAGCGTCAAC
Locus tag: RALTA_A0107
Name: null Funciton: Metallo-beta-lactamase family protein |
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Metallo-beta-lactamase family protein
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Position: -90
Score: 6.6 Sequence: ATTGACGTTTACGTAAAC
Position: -84
Score: 5.5 Sequence: GTTTACGTAAACGTAAAT
Locus tag: RALTA_A0109
Name: paaI Funciton: Phenylacetic acid degradation-related protein
Locus tag: RALTA_A0110
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: RALTA_A0111
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: RALTA_A0112
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: RALTA_A0113
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: RALTA_A0114
Name: null Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: RALTA_A0115
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: RALTA_A0116
Name: null Funciton: 2-Hydroxychromene-2-carboxylate isomerase
Locus tag: RALTA_A0117
Name: null Funciton: Putative phosphatase YieH
Locus tag: RALTA_A0118
Name: null Funciton: hypothetical protein
Locus tag: RALTA_A0119
Name: null Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) / Glutathione S-transferase
Locus tag: RALTA_A0120
Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: RALTA_A0121
Name: null Funciton: Dienelactone hydrolase or related enzyme
Locus tag: RALTA_A0122
Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
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paaI
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Phenylacetic acid degradation-related protein
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liuA
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Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
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aceK
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Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
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cah
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Carbonic anhydrase (EC 4.2.1.1)
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ivdA
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Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
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Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
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ivdC
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Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
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2-Hydroxychromene-2-carboxylate isomerase
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Putative phosphatase YieH
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hypothetical protein
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Maleylacetoacetate isomerase (EC 5.2.1.2) / Glutathione S-transferase
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liuB
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Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
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Dienelactone hydrolase or related enzyme
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liuC
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Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
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Position: -44
Score: 6.1 Sequence: CTTAACGTTTACGTAAAC
Position: -38
Score: 5.3 Sequence: GTTTACGTAAACGGAAAC
Locus tag: RALTA_A0558
Name: paaH Funciton: 3-hydroxyacyl-CoA dehydrogenase |
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paaH
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3-hydroxyacyl-CoA dehydrogenase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |