Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Ralstonia pickettii 12J

Properties
Regulator type: Transcription factor
TF locus tag: Rpic_0130
Regulator family: MerR
Regulation mode:
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Ralstonia
Statistics of regulated genes:
- Genes 12
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 57 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -150
Score: 6.6
Sequence: ATTGACGTTTACGTAAAC
Position: -144
Score: 5.3
Sequence: GTTTACGTAAACGTCAAT
Locus tag: Rpic_0129
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: Rpic_0128
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Rpic_0127
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
aceK
Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
cah
Carbonic anhydrase (EC 4.2.1.1)

Position: -56
Score: 5.9
Sequence: CTTGACGCGAACGTAAAC
Position: -50
Score: 4
Sequence: GCGAACGTAAACGTCAAG
Locus tag: Rpic_2811
Name: paaH
Funciton: 3-hydroxyacyl-CoA dehydrogenase
paaH
3-hydroxyacyl-CoA dehydrogenase

Position: -117
Score: 6.4
Sequence: ATTGACGCTAACGTAAAC
Position: -111
Score: 4.8
Sequence: GCTAACGTAAACGTCAAT
Locus tag: Rpic_0130
Name: liuR
Funciton: Transcriptional regulator, MerR family
liuR
Transcriptional regulator, MerR family

Position: -41
Score: 5.7
Sequence: CTTGACGTATACGTCAAT
Locus tag: Rpic_0115
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Rpic_0114
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Rpic_0113
Name: dcp
Funciton: Peptidyl-dipeptidase dcp (EC 3.4.15.5)
Locus tag: Rpic_0112
Name: null
Funciton: Protein of unknown function DUF1289
Locus tag: Rpic_0111
Name: null
Funciton: Beta-lactamase domain protein
serA
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
dcp
Peptidyl-dipeptidase dcp (EC 3.4.15.5)
Protein of unknown function DUF1289
Beta-lactamase domain protein

Position: -118
Score: 4.8
Sequence: GTTGACGAGTGCGTCAAC
Locus tag: Rpic_0089
Name: mcm
Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2)
mcm
Methylmalonyl-CoA mutase (EC 5.4.99.2)

Position: -91
Score: 6.3
Sequence: ATTGACGTTTACGTTAGC
Position: -85
Score: 5.1
Sequence: GTTTACGTTAGCGTCAAT
Locus tag: Rpic_0131
Name: null
Funciton: Metallo-beta-lactamase family protein
Metallo-beta-lactamase family protein
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