Regulon of LiuR in Ralstonia pickettii 12J
| Regulator type: | Transcription factor |
| TF locus tag: | Rpic_0130 |
| Regulator family: | MerR |
| Regulation mode: | |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Ralstonia |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Ralstonia
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -150
Score: 6.6 Sequence: ATTGACGTTTACGTAAAC
Position: -144
Score: 5.3 Sequence: GTTTACGTAAACGTCAAT
Locus tag: Rpic_0129
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: Rpic_0128
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Rpic_0127
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1) |
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liuA
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Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
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aceK
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Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
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cah
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Carbonic anhydrase (EC 4.2.1.1)
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Position: -56
Score: 5.9 Sequence: CTTGACGCGAACGTAAAC
Position: -50
Score: 4 Sequence: GCGAACGTAAACGTCAAG
Locus tag: Rpic_2811
Name: paaH Funciton: 3-hydroxyacyl-CoA dehydrogenase |
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paaH
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3-hydroxyacyl-CoA dehydrogenase
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Position: -117
Score: 6.4 Sequence: ATTGACGCTAACGTAAAC
Position: -111
Score: 4.8 Sequence: GCTAACGTAAACGTCAAT
Locus tag: Rpic_0130
Name: liuR Funciton: Transcriptional regulator, MerR family |
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liuR
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Transcriptional regulator, MerR family
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Position: -41
Score: 5.7 Sequence: CTTGACGTATACGTCAAT
Locus tag: Rpic_0115
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Rpic_0114
Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Rpic_0113
Name: dcp Funciton: Peptidyl-dipeptidase dcp (EC 3.4.15.5)
Locus tag: Rpic_0112
Name: null Funciton: Protein of unknown function DUF1289
Locus tag: Rpic_0111
Name: null Funciton: Beta-lactamase domain protein |
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serA
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D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
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liuE
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Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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dcp
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Peptidyl-dipeptidase dcp (EC 3.4.15.5)
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Protein of unknown function DUF1289
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Beta-lactamase domain protein
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Position: -118
Score: 4.8 Sequence: GTTGACGAGTGCGTCAAC
Locus tag: Rpic_0089
Name: mcm Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2) |
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mcm
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Methylmalonyl-CoA mutase (EC 5.4.99.2)
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Position: -91
Score: 6.3 Sequence: ATTGACGTTTACGTTAGC
Position: -85
Score: 5.1 Sequence: GTTTACGTTAGCGTCAAT
Locus tag: Rpic_0131
Name: null Funciton: Metallo-beta-lactamase family protein |
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Metallo-beta-lactamase family protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |