Regulon of LiuR in Ralstonia solanacearum GMI1000

Properties
Regulator type:	Transcription factor
TF locus tag:	RS03247
Regulator family:	MerR
Regulation mode:
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Ralstonia
Statistics of regulated genes:
- Genes	12
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 57 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Ralstonia
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -137 Score: 6.6 Sequence: GTTGACGTTTACGTAAAC Position: -131 Score: 5.3 Sequence: GTTTACGTAAACGTCAAT Locus tag: RS03246 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2) Locus tag: RSc0278 Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) Locus tag: RS03244 Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
	RS03246	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
	RSc0278	aceK	Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
	RS03244	cah	Carbonic anhydrase (EC 4.2.1.1)
Position: -34 Score: 6 Sequence: CTTGACGTATACGTCAAC Locus tag: RS00697 Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Locus tag: RS00696 Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) Locus tag: RS00695 Name: dcp Funciton: Peptidyl-dipeptidase dcp (EC 3.4.15.5) Locus tag: RS00694 Name: RSc0259 Funciton: Protein of unknown function DUF1289 Locus tag: RS00693 Name: RSc0258 Funciton: Beta-lactamase domain protein
	RS00697	serA	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
	RS00696	liuE	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
	RS00695	dcp	Peptidyl-dipeptidase dcp (EC 3.4.15.5)
	RS00694	RSc0259	Protein of unknown function DUF1289
	RS00693	RSc0258	Beta-lactamase domain protein
Position: -53 Score: 5.2 Sequence: TATGACGTTGACGTAAAC Position: -47 Score: 5.7 Sequence: GTTGACGTAAACGTCAAT Locus tag: RS05766 Name: paaH Funciton: 3-hydroxyacyl-CoA dehydrogenase
	RS05766	paaH	3-hydroxyacyl-CoA dehydrogenase
Position: -107 Score: 6.1 Sequence: TTTGACGCTAACGTAAAC Position: -101 Score: 4.8 Sequence: GCTAACGTAAACGTCAAT Locus tag: RS03247 Name: liuR Funciton: Transcriptional regulator, MerR family
	RS03247	liuR	Transcriptional regulator, MerR family
Position: -113 Score: 6.6 Sequence: GTTGACGTTTACGTAAAC Locus tag: RS00669 Name: mcm Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2)
	RS00669	mcm	Methylmalonyl-CoA mutase (EC 5.4.99.2)
Position: -77 Score: 6.3 Sequence: ATTGACGTTTACGTTAGC Position: -71 Score: 4.9 Sequence: GTTTACGTTAGCGTCAAA Locus tag: RS03248 Name: RSc0281 Funciton: Metallo-beta-lactamase family protein
	RS03248	RSc0281	Metallo-beta-lactamase family protein

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD