Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Ralstonia metallidurans CH34

Properties
Regulator type: Transcription factor
TF locus tag: Rmet_1981
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Ralstonia
Statistics of regulated genes:
- Genes 13
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 62 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -171
Score: 6.1
Sequence: TACTGTTTTTTTATACAGTA
Locus tag: Rmet_0466
Name: recA
Funciton: Recombinase A
Locus tag: Rmet_0467
Name: recX
Funciton: Regulatory protein RecX
recA
Recombinase A
recX
Regulatory protein RecX

Position: -63
Score: 5.4
Sequence: TACTGTATAAAATCACAGCA
Position: -43
Score: 6
Sequence: TACTGTTTAAACATACAGTG
Locus tag: Rmet_1981
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)

Position: -70
Score: 6.2
Sequence: TACTGTACATTCATACAGTA
Locus tag: Rmet_1177
Name: H16_A1352
Funciton: Conserved hypothetical protein
H16_A1352
Conserved hypothetical protein

Position: -40
Score: 6.1
Sequence: TACTGTACGTTTATACAGTA
Locus tag: Rmet_3545
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
dinB
DNA polymerase IV (EC 2.7.7.7)

Position: -72
Score: 6.4
Sequence: TACTGTATAAACATACAGTA
Locus tag: Rmet_4128
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: Rmet_4129
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: Rmet_4130
Name: dnaE2
Funciton: macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif.
imuA
Predicted RecA/RadA recombinase
imuB
DNA polymerase-like protein PA0670
dnaE2
macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif.

Position: -62
Score: 6.3
Sequence: CACTGTATATATTTACAGTA
Position: -43
Score: 5.2
Sequence: AACTGTATGGATGAACAGTC
Locus tag: Rmet_1637
Name: BPSS1334
Funciton: Conserved hypothetical protein
BPSS1334
Conserved hypothetical protein

Position: -66
Score: 5.6
Sequence: GGCTGTATGGATATACAGTG
Locus tag: Rmet_0232
Name: uvrD
Funciton: ATP-dependent DNA helicase II
uvrD
ATP-dependent DNA helicase II

Position: -150
Score: 6.1
Sequence: CACTGTATGTTCATACAGTA
Locus tag: Rmet_4549
Name: uvrA
Funciton: Excinuclease ABC subunit A
uvrA
Excinuclease ABC subunit A

Position: -42
Score: 6.3
Sequence: CACTGTATATTTATACAGTG
Locus tag: Rmet_5910
Name: H16_B2553
Funciton: Conserved hypothetical protein
H16_B2553
Conserved hypothetical protein

Position: -48
Score: 6.5
Sequence: TACTGTATATTTATACAGTA
Locus tag: Rmet_0742
Name: PF04055
Funciton: DNA repair photolyase
PF04055
DNA repair photolyase
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