Regulon of FadP in Ralstonia metallidurans CH34
| Regulator type: | Transcription factor |
| TF locus tag: | Rmet_0384 |
| Regulator family: | TetR |
| Regulation mode: | |
| Biological process: | Fatty acid degradation |
| Effector: | |
| Regulog: | FadP - Ralstonia |
| Statistics of regulated genes: | |
| - Genes | 32 |
| - Operons | 14 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - FadP
- By taxonomy - Ralstonia
- By TF family - TetR
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -243
Score: 5.4 Sequence: AAGAACGGTCGTTCAA
Locus tag: Rmet_1146
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Position: -48
Score: 5.5 Sequence: TAGTACGATCGTTCGA
Locus tag: Rmet_0737
Name: etfB Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Rmet_0738
Name: etfA Funciton: Electron transfer flavoprotein alpha subunit
Locus tag: Rmet_0739
Name: acdH2 Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
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etfB
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Electron transfer flavoprotein, beta subunit
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etfA
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Electron transfer flavoprotein alpha subunit
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acdH2
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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Position: -142
Score: 4.9 Sequence: CTGAACGACCGTTCTT
Locus tag: Rmet_0384
Name: fadP Funciton: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
Locus tag: Rmet_0385
Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: Rmet_0386
Name: acdB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Locus tag: Rmet_0387
Name: acdA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: Rmet_0388
Name: degV Funciton: conserved hypothetical protein, DegV family
Locus tag: Rmet_0389
Name: echH Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
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fadP
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Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
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acdH
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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acdB
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Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
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acdA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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degV
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conserved hypothetical protein, DegV family
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echH
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Enoyl-CoA hydratase (EC 4.2.1.17)
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Position: -106
Score: 5.3 Sequence: TAGAACGGTCGTTCAG
Locus tag: Rmet_2635
Name: fadD2 Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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fadD2
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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Position: 36
Score: 5.2 Sequence: TCGAACGACCGTTCAG
Locus tag: Rmet_1843
Name: RSc1772 Funciton: Alpha/beta hydrolase fold-3 domain protein
Locus tag: Rmet_1842
Name: h16_A1555 Funciton: conserved hypothetical protein, UPF0065
Locus tag: Rmet_1841
Name: Rsc1773 Funciton: putative 4-hydroxybenzoyl-CoA thioesterase |
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RSc1772
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Alpha/beta hydrolase fold-3 domain protein
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h16_A1555
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conserved hypothetical protein, UPF0065
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Rsc1773
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putative 4-hydroxybenzoyl-CoA thioesterase
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Position: -165
Score: 5.5 Sequence: TTGAACGACCGTGCTA
Locus tag: Rmet_1855
Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Rmet_1854
Name: pncA Funciton: Nicotinamidase (EC 3.5.1.19)
Locus tag: Rmet_1853
Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
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fadB
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Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
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pncA
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Nicotinamidase (EC 3.5.1.19)
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fadA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16)
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Position: -16
Score: 5.4 Sequence: TAGAACGGTCGTTCGC
Locus tag: Rmet_1061
Name: acsA Funciton: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
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acsA
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Acetyl-coenzyme A synthetase (EC 6.2.1.1)
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Position: -39
Score: 5.4 Sequence: TCGAACGATCGTTCCA
Locus tag: Rmet_0222
Name: nppD Funciton: 2-nitropropane dioxygenase NPD |
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nppD
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2-nitropropane dioxygenase NPD
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Position: -32
Score: 5 Sequence: ACGAACGATCGTTCAC
Locus tag: Rmet_0102
Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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liuR
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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Position: -44
Score: 4.9 Sequence: ACGTACGATCGTGCTA
Locus tag: Rmet_0974
Name: paaH1 Funciton: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
Locus tag: Rmet_0973
Name: paaG4 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Rmet_0972
Name: BPSL1235 Funciton: Phosphotransferase enzyme family protein |
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paaH1
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3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
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paaG4
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Enoyl-CoA hydratase (EC 4.2.1.17)
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BPSL1235
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Phosphotransferase enzyme family protein
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Position: -32
Score: 4.7 Sequence: TCGAACGACCATTCAG
Locus tag: Rmet_3148
Name: fadD1 Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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fadD1
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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Position: -62
Score: 5.2 Sequence: TAGCACGACCGTTCAC
Locus tag: Rmet_0943
Name: RSc2046 Funciton: conserved hypothetical protein, DUF1178
Locus tag: Rmet_0944
Name: acdQ Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.-)
Locus tag: Rmet_0945
Name: acdP Funciton: acyl-CoA dehydrogenase domain protein
Locus tag: Rmet_0946
Name: maoC Funciton: Putative (R)-specific enoyl-CoA hydratase, MaoC- like
Locus tag: Rmet_0947
Name: echI Funciton: MaoC domain protein dehydratase |
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RSc2046
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conserved hypothetical protein, DUF1178
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acdQ
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Acyl-CoA dehydrogenase (EC 1.3.99.-)
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acdP
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acyl-CoA dehydrogenase domain protein
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maoC
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Putative (R)-specific enoyl-CoA hydratase, MaoC- like
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echI
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MaoC domain protein dehydratase
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Position: -72
Score: 4.7 Sequence: AAGTACGGTCGTTCGT
Locus tag: Rmet_1362
Name: bktB Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Rmet_1363
Name: RSc1638 Funciton: hypothetical protein |
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bktB
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3-ketoacyl-CoA thiolase (EC 2.3.1.16)
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RSc1638
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hypothetical protein
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Position: -73
Score: 4.6 Sequence: TAGCACGATTGTTCGT
Locus tag: Rmet_1863
Name: alkK Funciton: Medium-chain-fatty-acid-CoA ligase |
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alkK
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Medium-chain-fatty-acid-CoA ligase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |