Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FadP in Ralstonia metallidurans CH34

Properties
Regulator type: Transcription factor
TF locus tag: Rmet_0384
Regulator family: TetR
Regulation mode:
Biological process: Fatty acid degradation
Effector:
Regulog: FadP - Ralstonia
Statistics of regulated genes:
- Genes 32
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 85 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -243
Score: 5.4
Sequence: AAGAACGGTCGTTCAA
Locus tag: Rmet_1146
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Rmet_1146
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -48
Score: 5.5
Sequence: TAGTACGATCGTTCGA
Locus tag: Rmet_0737
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Rmet_0738
Name: etfA
Funciton: Electron transfer flavoprotein alpha subunit
Locus tag: Rmet_0739
Name: acdH2
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Rmet_0737
etfB
Electron transfer flavoprotein, beta subunit
Rmet_0738
etfA
Electron transfer flavoprotein alpha subunit
Rmet_0739
acdH2
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -142
Score: 4.9
Sequence: CTGAACGACCGTTCTT
Locus tag: Rmet_0384
Name: fadP
Funciton: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
Locus tag: Rmet_0385
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: Rmet_0386
Name: acdB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Locus tag: Rmet_0387
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: Rmet_0388
Name: degV
Funciton: conserved hypothetical protein, DegV family
Locus tag: Rmet_0389
Name: echH
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Rmet_0384
fadP
Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
Rmet_0385
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Rmet_0386
acdB
Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Rmet_0387
acdA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Rmet_0388
degV
conserved hypothetical protein, DegV family
Rmet_0389
echH
Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -106
Score: 5.3
Sequence: TAGAACGGTCGTTCAG
Locus tag: Rmet_2635
Name: fadD2
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Rmet_2635
fadD2
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: 36
Score: 5.2
Sequence: TCGAACGACCGTTCAG
Locus tag: Rmet_1843
Name: RSc1772
Funciton: Alpha/beta hydrolase fold-3 domain protein
Locus tag: Rmet_1842
Name: h16_A1555
Funciton: conserved hypothetical protein, UPF0065
Locus tag: Rmet_1841
Name: Rsc1773
Funciton: putative 4-hydroxybenzoyl-CoA thioesterase
Rmet_1843
RSc1772
Alpha/beta hydrolase fold-3 domain protein
Rmet_1842
h16_A1555
conserved hypothetical protein, UPF0065
Rmet_1841
Rsc1773
putative 4-hydroxybenzoyl-CoA thioesterase
Position: -165
Score: 5.5
Sequence: TTGAACGACCGTGCTA
Locus tag: Rmet_1855
Name: fadB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Rmet_1854
Name: pncA
Funciton: Nicotinamidase (EC 3.5.1.19)
Locus tag: Rmet_1853
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Rmet_1855
fadB
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Rmet_1854
pncA
Nicotinamidase (EC 3.5.1.19)
Rmet_1853
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Position: -16
Score: 5.4
Sequence: TAGAACGGTCGTTCGC
Locus tag: Rmet_1061
Name: acsA
Funciton: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Rmet_1061
acsA
Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Position: -39
Score: 5.4
Sequence: TCGAACGATCGTTCCA
Locus tag: Rmet_0222
Name: nppD
Funciton: 2-nitropropane dioxygenase NPD
Rmet_0222
nppD
2-nitropropane dioxygenase NPD
Position: -32
Score: 5
Sequence: ACGAACGATCGTTCAC
Locus tag: Rmet_0102
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Rmet_0102
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Position: -44
Score: 4.9
Sequence: ACGTACGATCGTGCTA
Locus tag: Rmet_0974
Name: paaH1
Funciton: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
Locus tag: Rmet_0973
Name: paaG4
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Rmet_0972
Name: BPSL1235
Funciton: Phosphotransferase enzyme family protein
Rmet_0974
paaH1
3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
Rmet_0973
paaG4
Enoyl-CoA hydratase (EC 4.2.1.17)
Rmet_0972
BPSL1235
Phosphotransferase enzyme family protein
Position: -32
Score: 4.7
Sequence: TCGAACGACCATTCAG
Locus tag: Rmet_3148
Name: fadD1
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Rmet_3148
fadD1
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -62
Score: 5.2
Sequence: TAGCACGACCGTTCAC
Locus tag: Rmet_0943
Name: RSc2046
Funciton: conserved hypothetical protein, DUF1178
Locus tag: Rmet_0944
Name: acdQ
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.-)
Locus tag: Rmet_0945
Name: acdP
Funciton: acyl-CoA dehydrogenase domain protein
Locus tag: Rmet_0946
Name: maoC
Funciton: Putative (R)-specific enoyl-CoA hydratase, MaoC- like
Locus tag: Rmet_0947
Name: echI
Funciton: MaoC domain protein dehydratase
Rmet_0943
RSc2046
conserved hypothetical protein, DUF1178
Rmet_0944
acdQ
Acyl-CoA dehydrogenase (EC 1.3.99.-)
Rmet_0945
acdP
acyl-CoA dehydrogenase domain protein
Rmet_0946
maoC
Putative (R)-specific enoyl-CoA hydratase, MaoC- like
Rmet_0947
echI
MaoC domain protein dehydratase
Position: -72
Score: 4.7
Sequence: AAGTACGGTCGTTCGT
Locus tag: Rmet_1362
Name: bktB
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Rmet_1363
Name: RSc1638
Funciton: hypothetical protein
Rmet_1362
bktB
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Rmet_1363
RSc1638
hypothetical protein
Position: -73
Score: 4.6
Sequence: TAGCACGATTGTTCGT
Locus tag: Rmet_1863
Name: alkK
Funciton: Medium-chain-fatty-acid-CoA ligase
Rmet_1863
alkK
Medium-chain-fatty-acid-CoA ligase
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