Regulog FadP - Ralstonia

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:
Biological process:	Fatty acid degradation
Effector:
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 85 sites [see more]

Member of regulog collections

By trascription factor - FadP
By taxonomy - Ralstonia
By TF family - TetR
By pathway - Fatty acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Ralstonia solanacearum GMI1000	30	11
Ralstonia pickettii 12J	28	11
Ralstonia metallidurans CH34	32	14
Ralstonia eutropha JMP134	35	15
Ralstonia eutropha H16	36	15
Cupriavidus taiwanensis	36	15

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
fadP	* Ralstonia solanacearum GMI1000 Site: position = -136 score = 5.68703 sequence = TTGAACGATCGTTCGA Gene: RS04423: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Ralstonia pickettii 12J Site: position = -136 score = 5.60779 sequence = TTGAACGACCGTTCGA Gene: Rpic_0347: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Ralstonia metallidurans CH34 Site: position = -142 score = 4.90009 sequence = CTGAACGACCGTTCTT Gene: Rmet_0384: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Ralstonia eutropha JMP134 Site: position = -140 score = 4.90009 sequence = CTGAACGACCGTTCTT Gene: Reut_A0445: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Ralstonia eutropha H16 Site: position = -143 score = 4.90009 sequence = CTGAACGACCGTTCTT Gene: H16_A0459: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Cupriavidus taiwanensis Site: position = -141 score = 4.90009 sequence = CTGAACGACCGTTCTT Gene: RALTA_A0402: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
acdH	Ralstonia solanacearum GMI1000 Gene: RS04422: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Ralstonia pickettii 12J Gene: Rpic_0348: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Ralstonia metallidurans CH34 Gene: Rmet_0385: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Ralstonia eutropha JMP134 Gene: Reut_A0446: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Ralstonia eutropha H16 Gene: H16_A0460: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Cupriavidus taiwanensis Gene: RALTA_A0403: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Acyl-CoA dehydrogenase (EC 1.3.99.3)
acdB	Ralstonia solanacearum GMI1000 Gene: RS04421: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Ralstonia pickettii 12J Gene: Rpic_0349: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Ralstonia metallidurans CH34 Gene: Rmet_0386: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Ralstonia eutropha JMP134 Gene: Reut_A0447: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Ralstonia eutropha H16 Gene: H16_A0461: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Cupriavidus taiwanensis Gene: RALTA_A0404: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
acdA	Ralstonia solanacearum GMI1000 Gene: RS04420: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Ralstonia pickettii 12J Gene: Rpic_0350: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Ralstonia metallidurans CH34 Gene: Rmet_0387: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Ralstonia eutropha JMP134 Gene: Reut_A0448: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Ralstonia eutropha H16 Gene: H16_A0462: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Cupriavidus taiwanensis Gene: RALTA_A0405: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
degV	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34 Gene: Rmet_0388: conserved hypothetical protein, DegV family	Ralstonia eutropha JMP134 Gene: Reut_A0449: conserved hypothetical protein, DegV family	Ralstonia eutropha H16 Gene: H16_A0463: conserved hypothetical protein, DegV family	Cupriavidus taiwanensis Gene: RALTA_A0406: conserved hypothetical protein, DegV family	conserved hypothetical protein, DegV family
echH	Ralstonia solanacearum GMI1000 Gene: RS04419: Enoyl-CoA hydratase (EC 4.2.1.17)	Ralstonia pickettii 12J	Ralstonia metallidurans CH34 Gene: Rmet_0389: Enoyl-CoA hydratase (EC 4.2.1.17)	Ralstonia eutropha JMP134 Gene: Reut_A0450: Enoyl-CoA hydratase (EC 4.2.1.17)	Ralstonia eutropha H16 Gene: H16_A0464: Enoyl-CoA hydratase (EC 4.2.1.17)	Cupriavidus taiwanensis Gene: RALTA_A0407: Enoyl-CoA hydratase (EC 4.2.1.17)	Enoyl-CoA hydratase (EC 4.2.1.17)

CRON 2.
etfB	* Ralstonia solanacearum GMI1000 Site: position = -95 score = 5.20422 sequence = TAGCACGACCGTTCGT Gene: RSc0923: Electron transfer flavoprotein, beta subunit	* Ralstonia pickettii 12J Site: position = -96 score = 5.11798 sequence = TAGCACGACCGTTCGG Gene: Rpic_0793: Electron transfer flavoprotein, beta subunit	* Ralstonia metallidurans CH34 Site: position = -48 score = 5.47857 sequence = TAGTACGATCGTTCGA Gene: Rmet_0737: Electron transfer flavoprotein, beta subunit	* Ralstonia eutropha JMP134 Site: position = -97 score = 5.47857 sequence = TAGTACGATCGTTCGA Gene: Reut_A2550: Electron transfer flavoprotein, beta subunit	* Ralstonia eutropha H16 Site: position = -98 score = 5.47857 sequence = TAGTACGATCGTTCGA Gene: H16_A0814: Electron transfer flavoprotein, beta subunit	* Cupriavidus taiwanensis Site: position = -98 score = 5.47857 sequence = TAGTACGATCGTTCGA Gene: RALTA_A0795: Electron transfer flavoprotein, beta subunit	Electron transfer flavoprotein, beta subunit
etfA	Ralstonia solanacearum GMI1000 Gene: RSc0924: Electron transfer flavoprotein alpha subunit	Ralstonia pickettii 12J Gene: Rpic_0794: Electron transfer flavoprotein alpha subunit	Ralstonia metallidurans CH34 Gene: Rmet_0738: Electron transfer flavoprotein alpha subunit	Ralstonia eutropha JMP134 Gene: Reut_A2549: Electron transfer flavoprotein alpha subunit	Ralstonia eutropha H16 Gene: H16_A0815: Electron transfer flavoprotein alpha subunit	Cupriavidus taiwanensis Gene: RALTA_A0796: Electron transfer flavoprotein alpha subunit	Electron transfer flavoprotein alpha subunit
acdH2	Ralstonia solanacearum GMI1000 Gene: RS04489: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Ralstonia pickettii 12J Gene: Rpic_0795: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Ralstonia metallidurans CH34 Gene: Rmet_0739: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Ralstonia eutropha JMP134 Gene: Reut_A2548: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Ralstonia eutropha H16 Gene: H16_A0816: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Cupriavidus taiwanensis Gene: RALTA_A0797: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Acyl-CoA dehydrogenase (EC 1.3.99.3)

CRON 3.
etfD	* Ralstonia solanacearum GMI1000 Site: position = -120 score = 5.60779 sequence = TCGAACGACCGTTCAA Gene: RSc1567: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Ralstonia pickettii 12J Site: position = -121 score = 5.23688 sequence = TCGAACGATCGTTCAG Gene: Rpic_1986: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Ralstonia metallidurans CH34 Site: position = -243 score = 5.35024 sequence = AAGAACGGTCGTTCAA Gene: Rmet_1146: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Ralstonia eutropha JMP134 Site: position = -211 score = 5.10722 sequence = AAGAACGACCGTTCCA Gene: Reut_A1262: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Ralstonia eutropha H16 Site: position = -248 score = 5.10722 sequence = AAGAACGACCGTTCCA Gene: H16_A1324: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Cupriavidus taiwanensis Site: position = -288 score = 5.10722 sequence = AAGAACGACCGTTCCA Gene: RALTA_A1245: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

CRON 4.
fadD2	* Ralstonia solanacearum GMI1000 Site: position = -58 score = 5.34325 sequence = TAGAACGATCGTTCAG Gene: RSc0780: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Ralstonia pickettii 12J Site: position = -60 score = 5.36645 sequence = TAGAACGATCGTTCGG Gene: Rpic_0727: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Ralstonia metallidurans CH34 Site: position = -106 score = 5.264 sequence = TAGAACGGTCGTTCAG Gene: Rmet_2635: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Ralstonia eutropha JMP134 Site: position = -73 score = 5.36645 sequence = TAGAACGATCGTTCGG Gene: Reut_A0823: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Ralstonia eutropha H16 Site: position = -74 score = 5.36645 sequence = TAGAACGATCGTTCGG Gene: H16_A2794: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Cupriavidus taiwanensis Site: position = -73 score = 5.36645 sequence = TAGAACGATCGTTCGG Gene: RALTA_A2284: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

CRON 5.
RSc1772	* Ralstonia solanacearum GMI1000 Site: position = 41 score = 4.97934 sequence = AAGAACGATCGTTCAG Gene: RS02959: Alpha/beta hydrolase fold-3 domain protein	* Ralstonia pickettii 12J Site: position = -27 score = 5.34325 sequence = TAGAACGATCGTTCAG Gene: Rpic_1434: Alpha/beta hydrolase fold-3 domain protein	* Ralstonia metallidurans CH34 Site: position = 36 score = 5.15764 sequence = TCGAACGACCGTTCAG Gene: Rmet_1843: Alpha/beta hydrolase fold-3 domain protein	* Ralstonia eutropha JMP134 Site: position = 12 score = 5.24388 sequence = TCGAACGACCGTTCAC Gene: Reut_A1419: Alpha/beta hydrolase fold-3 domain protein	* Ralstonia eutropha H16 Site: position = -97 score = 5.32312 sequence = TCGAACGATCGTTCAC Gene: H16_A1554: Alpha/beta hydrolase fold-3 domain protein	* Cupriavidus taiwanensis Site: position = -97 score = 5.32312 sequence = TCGAACGATCGTTCAC Gene: RALTA_A1480: Alpha/beta hydrolase fold-3 domain protein	Alpha/beta hydrolase fold-3 domain protein
h16_A1555	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34 Gene: Rmet_1842: conserved hypothetical protein, UPF0065	Ralstonia eutropha JMP134 Gene: Reut_A1420: conserved hypothetical protein, UPF0065	Ralstonia eutropha H16 Gene: H16_A1555: conserved hypothetical protein, UPF0065	Cupriavidus taiwanensis Gene: RALTA_A1481: conserved hypothetical protein, UPF0065	conserved hypothetical protein, UPF0065
Rsc1773	Ralstonia solanacearum GMI1000 Gene: RS02960: putative 4-hydroxybenzoyl-CoA thioesterase	Ralstonia pickettii 12J Gene: Rpic_1433: putative 4-hydroxybenzoyl-CoA thioesterase	Ralstonia metallidurans CH34 Gene: Rmet_1841: putative 4-hydroxybenzoyl-CoA thioesterase	Ralstonia eutropha JMP134 Gene: Reut_A1421: putative 4-hydroxybenzoyl-CoA thioesterase	Ralstonia eutropha H16 Gene: H16_A1556: putative 4-hydroxybenzoyl-CoA thioesterase	Cupriavidus taiwanensis Gene: RALTA_A1482: putative 4-hydroxybenzoyl-CoA thioesterase	putative 4-hydroxybenzoyl-CoA thioesterase
Rsc1774	Ralstonia solanacearum GMI1000 Gene: RS02961: GCN5-related N-acetyltransferase	Ralstonia pickettii 12J Gene: Rpic_1432: GCN5-related N-acetyltransferase	Ralstonia metallidurans CH34 Gene: Rmet_1833: GCN5-related N-acetyltransferase	Ralstonia eutropha JMP134 Gene: Reut_A1429: GCN5-related N-acetyltransferase	Ralstonia eutropha H16 Gene: H16_A1564: GCN5-related N-acetyltransferase	Cupriavidus taiwanensis Gene: RALTA_A1490: GCN5-related N-acetyltransferase	GCN5-related N-acetyltransferase

CRON 6.
fadB	* Ralstonia solanacearum GMI1000 Site: position = -101 score = 5.54493 sequence = TTGAACGACCGTGCTA Gene: RS02946: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Ralstonia pickettii 12J Site: position = -141 score = 5.54493 sequence = TTGAACGACCGTGCTA Gene: Rpic_1447: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Ralstonia metallidurans CH34 Site: position = -165 score = 5.54493 sequence = TTGAACGACCGTGCTA Gene: Rmet_1855: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Ralstonia eutropha JMP134 Site: position = -203 score = 5.54493 sequence = TTGAACGACCGTGCTA Gene: Reut_A1405: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Ralstonia eutropha H16 Site: position = -214 score = 5.54493 sequence = TTGAACGACCGTGCTA Gene: H16_A1526: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Cupriavidus taiwanensis Site: position = -218 score = 5.54493 sequence = TTGAACGACCGTGCTA Gene: RALTA_A1467: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
pncA	Ralstonia solanacearum GMI1000 Gene: RSc1760: Nicotinamidase (EC 3.5.1.19)	Ralstonia pickettii 12J Gene: Rpic_1446: Nicotinamidase (EC 3.5.1.19)	Ralstonia metallidurans CH34 Gene: Rmet_1854: Nicotinamidase (EC 3.5.1.19)	Ralstonia eutropha JMP134 Gene: Reut_A1406: Nicotinamidase (EC 3.5.1.19)	Ralstonia eutropha H16 Gene: H16_A1527: Nicotinamidase (EC 3.5.1.19)	Cupriavidus taiwanensis Gene: RALTA_A1468: Nicotinamidase (EC 3.5.1.19)	Nicotinamidase (EC 3.5.1.19)
fadA	Ralstonia solanacearum GMI1000 Gene: RS02948: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Ralstonia pickettii 12J Gene: Rpic_1445: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Ralstonia metallidurans CH34 Gene: Rmet_1853: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Ralstonia eutropha JMP134 Gene: Reut_A1407: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Ralstonia eutropha H16 Gene: H16_A1528: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Cupriavidus taiwanensis Gene: RALTA_A1469: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	3-ketoacyl-CoA thiolase (EC 2.3.1.16)
paaI	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134	Ralstonia eutropha H16 Gene: H16_A1529: phenylacetic acid degradation protein PaaI	Cupriavidus taiwanensis Gene: RALTA_A1470: phenylacetic acid degradation protein PaaI	phenylacetic acid degradation protein PaaI
acdH3	Ralstonia solanacearum GMI1000 Gene: RS02949: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Ralstonia pickettii 12J Gene: Rpic_1444: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Ralstonia metallidurans CH34 Gene: Rmet_1852: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Ralstonia eutropha JMP134 Gene: Reut_A1408: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Ralstonia eutropha H16 Gene: H16_A1530: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Cupriavidus taiwanensis Gene: RALTA_A1471: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Acyl-CoA dehydrogenase (EC 1.3.99.3)

CRON 7.
acsA	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	* Ralstonia metallidurans CH34 Site: position = -16 score = 5.37344 sequence = TAGAACGGTCGTTCGC Gene: Rmet_1061: Acetyl-coenzyme A synthetase (EC 6.2.1.1)	* Ralstonia eutropha JMP134 Site: position = -49 score = 5.37344 sequence = TAGAACGACCGTTCGC Gene: Reut_A1097: Acetyl-coenzyme A synthetase (EC 6.2.1.1)	* Ralstonia eutropha H16 Site: position = -91 score = 5.45268 sequence = TAGAACGATCGTTCGC Gene: H16_A1197: Acetyl-coenzyme A synthetase (EC 6.2.1.1)	* Cupriavidus taiwanensis Site: position = -95 score = 5.45268 sequence = TAGAACGATCGTTCGC Gene: RALTA_A1174: Acetyl-coenzyme A synthetase (EC 6.2.1.1)	Acetyl-coenzyme A synthetase (EC 6.2.1.1)

CRON 8.
nppD	Ralstonia solanacearum GMI1000 Gene: RS00690: 2-nitropropane dioxygenase NPD	Ralstonia pickettii 12J Gene: Rpic_0096: 2-nitropropane dioxygenase NPD	* Ralstonia metallidurans CH34 Site: position = -39 score = 5.44401 sequence = TCGAACGATCGTTCCA Gene: Rmet_0222: 2-nitropropane dioxygenase NPD	* Ralstonia eutropha JMP134 Site: position = -58 score = 5.24388 sequence = TCGAACGACCGTTCAT Gene: Reut_A0268: 2-nitropropane dioxygenase NPD	* Ralstonia eutropha H16 Site: position = -59 score = 5.24388 sequence = TCGAACGACCGTTCAT Gene: H16_A0293: 2-nitropropane dioxygenase NPD	* Cupriavidus taiwanensis Site: position = -58 score = 5.24388 sequence = TCGAACGACCGTTCAC Gene: RALTA_A0233: 2-nitropropane dioxygenase NPD	2-nitropropane dioxygenase NPD

CRON 9.
liuR	Ralstonia solanacearum GMI1000 Gene: RS03247: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	Ralstonia pickettii 12J Gene: Rpic_0130: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Ralstonia metallidurans CH34 Site: position = -32 score = 4.95921 sequence = ACGAACGATCGTTCAC Gene: Rmet_0102: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Ralstonia eutropha JMP134 Site: position = -32 score = 4.87997 sequence = ACGAACGACCGTTCAC Gene: Reut_A0133: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Ralstonia eutropha H16 Site: position = -32 score = 4.87997 sequence = ACGAACGACCGTTCAC Gene: H16_A0165: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Cupriavidus taiwanensis Site: position = -32 score = 4.87997 sequence = ACGAACGACCGTTCAC Gene: RALTA_A0108: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family

CRON 10.
Rmet_0145	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	* Ralstonia eutropha JMP134 Site: position = -10 score = 5.56813 sequence = TCGAACGACCGTGCTA Gene: Reut_A0190: TesB-like acyl-CoA thioesterase 2	* Ralstonia eutropha H16 Site: position = -46 score = 5.64737 sequence = TCGAACGATCGTGCTA Gene: H16_A0217: TesB-like acyl-CoA thioesterase 2	* Cupriavidus taiwanensis Site: position = -43 score = 5.45268 sequence = GCGAACGATCGTTCTA Gene: RALTA_A0160: TesB-like acyl-CoA thioesterase 2	TesB-like acyl-CoA thioesterase 2

CRON 11.
paaH1	* Ralstonia solanacearum GMI1000 Site: position = -49 score = 4.86982 sequence = TCGCACGCTCGTGCTA Gene: RSc2013: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation	* Ralstonia pickettii 12J Site: position = -53 score = 4.86982 sequence = TCGCACGCTCGTGCTA Gene: Rpic_2168: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation	* Ralstonia metallidurans CH34 Site: position = -44 score = 4.94544 sequence = ACGTACGATCGTGCTA Gene: Rmet_0974: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation	* Ralstonia eutropha JMP134 Site: position = -43 score = 4.94544 sequence = ACGTACGATCGTGCTA Gene: Reut_A1010: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation	* Ralstonia eutropha H16 Site: position = -43 score = 4.94544 sequence = ACGTACGATCGTGCTA Gene: H16_A1102: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation	* Cupriavidus taiwanensis Site: position = -31 score = 4.94544 sequence = ACGTACGATCGTGCTA Gene: RALTA_A1087: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation	3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
paaG4	Ralstonia solanacearum GMI1000 Gene: RSc2014: Enoyl-CoA hydratase (EC 4.2.1.17)	Ralstonia pickettii 12J Gene: Rpic_2169: Enoyl-CoA hydratase (EC 4.2.1.17)	Ralstonia metallidurans CH34 Gene: Rmet_0973: Enoyl-CoA hydratase (EC 4.2.1.17)	Ralstonia eutropha JMP134 Gene: Reut_A1009: Enoyl-CoA hydratase (EC 4.2.1.17)	Ralstonia eutropha H16 Gene: H16_A1101: Enoyl-CoA hydratase (EC 4.2.1.17)	Cupriavidus taiwanensis Gene: RALTA_A1086: Enoyl-CoA hydratase (EC 4.2.1.17)	Enoyl-CoA hydratase (EC 4.2.1.17)
BPSL1236	Ralstonia solanacearum GMI1000 Gene: RS03583: Putative phosphoglycerate mutase	Ralstonia pickettii 12J Gene: Rpic_2170: Putative phosphoglycerate mutase	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_A1008: Putative phosphoglycerate mutase	Ralstonia eutropha H16 Gene: H16_A1100: Putative phosphoglycerate mutase	Cupriavidus taiwanensis Gene: RALTA_A1085: Putative phosphoglycerate mutase	Putative phosphoglycerate mutase
BPSL1235	Ralstonia solanacearum GMI1000 Gene: RS03584: Phosphotransferase enzyme family protein	Ralstonia pickettii 12J Gene: Rpic_2171: Phosphotransferase enzyme family protein	Ralstonia metallidurans CH34 Gene: Rmet_0972: Phosphotransferase enzyme family protein	Ralstonia eutropha JMP134 Gene: Reut_A1007: Phosphotransferase enzyme family protein	Ralstonia eutropha H16 Gene: H16_A1099: Phosphotransferase enzyme family protein	Cupriavidus taiwanensis Gene: RALTA_A1084: Phosphotransferase enzyme family protein	Phosphotransferase enzyme family protein

CRON 12.
fadD1	* Ralstonia solanacearum GMI1000 Site: position = -47 score = 5.21044 sequence = TCGAACGACCATTCGA Gene: RSc2857: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Ralstonia pickettii 12J Site: position = -46 score = 4.84653 sequence = ACGAACGACCATTCGA Gene: Rpic_3104: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Ralstonia metallidurans CH34 Site: position = -32 score = 4.73709 sequence = TCGAACGACCATTCAG Gene: Rmet_3148: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Ralstonia eutropha JMP134 Site: position = -34 score = 4.73709 sequence = TCGAACGACCATTCAG Gene: Reut_A2994: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Ralstonia eutropha H16 Site: position = -34 score = 4.73709 sequence = TCGAACGACCATTCAG Gene: H16_A3288: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Cupriavidus taiwanensis Site: position = -35 score = 4.73709 sequence = TCGAACGACCATTCAG Gene: RALTA_A2744: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

CRON 13.
RSc2046	* Ralstonia solanacearum GMI1000 Site: position = -63 score = 5.54493 sequence = TAGCACGACCGTTCAA Gene: RS03611: conserved hypothetical protein, DUF1178	* Ralstonia pickettii 12J Site: position = -85 score = 5.09785 sequence = GCGAACGGTCGTGCGA Site: position = -63 score = 5.18102 sequence = TAGCACGACCGTTCAC Gene: Rpic_2198: conserved hypothetical protein, DUF1178	* Ralstonia metallidurans CH34 Site: position = -62 score = 5.18102 sequence = TAGCACGACCGTTCAC Gene: Rmet_0943: conserved hypothetical protein, DUF1178	* Ralstonia eutropha JMP134 Site: position = -64 score = 5.18102 sequence = TAGCACGACCGTTCAC Gene: Reut_A0977: conserved hypothetical protein, DUF1178	* Ralstonia eutropha H16 Site: position = -87 score = 5.2872 sequence = CCGAACGGTCGTTCTA Site: position = -64 score = 5.18102 sequence = TAGCACGACCGTTCAC Gene: H16_A1066: conserved hypothetical protein, DUF1178	* Cupriavidus taiwanensis Site: position = -87 score = 5.37344 sequence = ACGAACGGTCGTTCTA Site: position = -64 score = 5.18102 sequence = TAGCACGACCGTTCAC Gene: RALTA_A1050: conserved hypothetical protein, DUF1178	conserved hypothetical protein, DUF1178
acdQ	Ralstonia solanacearum GMI1000 Gene: RS03610: Acyl-CoA dehydrogenase (EC 1.3.99.-)	Ralstonia pickettii 12J Gene: Rpic_2197: Acyl-CoA dehydrogenase (EC 1.3.99.-)	Ralstonia metallidurans CH34 Gene: Rmet_0944: Acyl-CoA dehydrogenase (EC 1.3.99.-)	Ralstonia eutropha JMP134 Gene: Reut_A0978: Acyl-CoA dehydrogenase (EC 1.3.99.-)	Ralstonia eutropha H16 Gene: H16_A1067: Acyl-CoA dehydrogenase (EC 1.3.99.-)	Cupriavidus taiwanensis Gene: RALTA_A1051: Acyl-CoA dehydrogenase (EC 1.3.99.-)	Acyl-CoA dehydrogenase (EC 1.3.99.-)
acdP	Ralstonia solanacearum GMI1000 Gene: RS03609: acyl-CoA dehydrogenase domain protein	Ralstonia pickettii 12J Gene: Rpic_2196: acyl-CoA dehydrogenase domain protein	Ralstonia metallidurans CH34 Gene: Rmet_0945: acyl-CoA dehydrogenase domain protein	Ralstonia eutropha JMP134 Gene: Reut_A0979: acyl-CoA dehydrogenase domain protein	Ralstonia eutropha H16 Gene: H16_A1068: acyl-CoA dehydrogenase domain protein	Cupriavidus taiwanensis Gene: RALTA_A1052: acyl-CoA dehydrogenase domain protein	acyl-CoA dehydrogenase domain protein
maoC	Ralstonia solanacearum GMI1000 Gene: RS03608: Putative (R)-specific enoyl-CoA hydratase, MaoC- like	Ralstonia pickettii 12J Gene: Rpic_2195: Putative (R)-specific enoyl-CoA hydratase, MaoC- like	Ralstonia metallidurans CH34 Gene: Rmet_0946: Putative (R)-specific enoyl-CoA hydratase, MaoC- like	Ralstonia eutropha JMP134 Gene: Reut_A0980: Putative (R)-specific enoyl-CoA hydratase, MaoC- like	Ralstonia eutropha H16 Gene: H16_A1069: Putative (R)-specific enoyl-CoA hydratase, MaoC- like	Cupriavidus taiwanensis Gene: RALTA_A1053: Putative (R)-specific enoyl-CoA hydratase, MaoC- like	Putative (R)-specific enoyl-CoA hydratase, MaoC- like
echI	Ralstonia solanacearum GMI1000 Gene: RS03607: MaoC domain protein dehydratase	Ralstonia pickettii 12J Gene: Rpic_2194: MaoC domain protein dehydratase	Ralstonia metallidurans CH34 Gene: Rmet_0947: MaoC domain protein dehydratase	Ralstonia eutropha JMP134 Gene: Reut_A0981: MaoC domain protein dehydratase	Ralstonia eutropha H16 Gene: H16_A1070: MaoC domain protein dehydratase	Cupriavidus taiwanensis Gene: RALTA_A1054: MaoC domain protein dehydratase	MaoC domain protein dehydratase

CRON 14.
bktB	* Ralstonia solanacearum GMI1000 Site: position = -59 score = 4.79731 sequence = TCGAACGATCGTTTGC Gene: RSc1637: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	* Ralstonia pickettii 12J Site: position = -59 score = 4.73394 sequence = GCGAACGGTCGTGCGT Gene: Rpic_1910: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	* Ralstonia metallidurans CH34 Site: position = -72 score = 4.6715 sequence = AAGTACGGTCGTTCGT Gene: Rmet_1362: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	* Ralstonia eutropha JMP134 Site: position = -71 score = 5.11466 sequence = AAGTACGATCGTTCGA Gene: Reut_A1353: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	* Ralstonia eutropha H16 Site: position = -73 score = 4.50632 sequence = AAGTACGCTCGTTCGA Gene: H16_A1445: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	* Cupriavidus taiwanensis Site: position = -72 score = 4.6483 sequence = AAGTACGACCGTTCAC Gene: RALTA_A1359: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	3-ketoacyl-CoA thiolase (EC 2.3.1.16)
RSc1638	Ralstonia solanacearum GMI1000 Gene: RS04012: hypothetical protein	Ralstonia pickettii 12J Gene: Rpic_1909: hypothetical protein	Ralstonia metallidurans CH34 Gene: Rmet_1363: hypothetical protein	Ralstonia eutropha JMP134 Gene: Reut_A1354: hypothetical protein	Ralstonia eutropha H16 Gene: H16_A1446: hypothetical protein	Cupriavidus taiwanensis Gene: RALTA_A1360: hypothetical protein	hypothetical protein

CRON 15.
alkK	* Ralstonia solanacearum GMI1000 Site: position = -42 score = 4.58194 sequence = TAGAACGGTTGTTCAG Gene: RSc1749: Medium-chain-fatty-acid-CoA ligase	* Ralstonia pickettii 12J Site: position = -34 score = 4.58194 sequence = TAGAACGGTTGTTCAG Gene: Rpic_1455: Medium-chain-fatty-acid-CoA ligase	* Ralstonia metallidurans CH34 Site: position = -73 score = 4.6014 sequence = TAGCACGATTGTTCGT Gene: Rmet_1863: Medium-chain-fatty-acid-CoA ligase	* Ralstonia eutropha JMP134 Site: position = -54 score = 4.69137 sequence = TAGAACGGTTGTTCGT Gene: Reut_A1398: Medium-chain-fatty-acid-CoA ligase	* Ralstonia eutropha H16 Site: position = -55 score = 4.35334 sequence = TAGTACGGTTGTTCGT Gene: H16_A1519: Medium-chain-fatty-acid-CoA ligase	* Cupriavidus taiwanensis Site: position = -73 score = 4.61862 sequence = GCGAACGACCGTCCAA Site: position = -54 score = 4.35334 sequence = TAGTACGGTTGTTCGT Gene: RALTA_A1460: Medium-chain-fatty-acid-CoA ligase	Medium-chain-fatty-acid-CoA ligase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FadP - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --