Regulog FadP - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | |
| Biological process: | Fatty acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - FadP
- By taxonomy - Ralstonia
- By TF family - TetR
- By pathway - Fatty acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Ralstonia solanacearum GMI1000 | 30 | 11 |
| Ralstonia pickettii 12J | 28 | 11 |
| Ralstonia metallidurans CH34 | 32 | 14 |
| Ralstonia eutropha JMP134 | 35 | 15 |
| Ralstonia eutropha H16 | 36 | 15 |
| Cupriavidus taiwanensis | 36 | 15 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| fadP |
*
Ralstonia solanacearum GMI1000 Site: position = -136 score = 5.68703 sequence = TTGAACGATCGTTCGA Gene: RS04423: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Ralstonia pickettii 12J Site: position = -136 score = 5.60779 sequence = TTGAACGACCGTTCGA Gene: Rpic_0347: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Ralstonia metallidurans CH34 Site: position = -142 score = 4.90009 sequence = CTGAACGACCGTTCTT Gene: Rmet_0384: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Ralstonia eutropha JMP134 Site: position = -140 score = 4.90009 sequence = CTGAACGACCGTTCTT Gene: Reut_A0445: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Ralstonia eutropha H16 Site: position = -143 score = 4.90009 sequence = CTGAACGACCGTTCTT Gene: H16_A0459: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Cupriavidus taiwanensis Site: position = -141 score = 4.90009 sequence = CTGAACGACCGTTCTT Gene: RALTA_A0402: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
| acdH |
Gene: RS04422: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Rpic_0348: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Rmet_0385: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Reut_A0446: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: H16_A0460: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: RALTA_A0403: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Acyl-CoA dehydrogenase (EC 1.3.99.3) |
| acdB |
Gene: RS04421: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: Rpic_0349: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: Rmet_0386: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: Reut_A0447: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: H16_A0461: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: RALTA_A0404: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
| acdA |
Gene: RS04420: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Rpic_0350: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Rmet_0387: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Reut_A0448: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: H16_A0462: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: RALTA_A0405: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| degV |
|
|
Gene: Rmet_0388: conserved hypothetical protein, DegV family |
Gene: Reut_A0449: conserved hypothetical protein, DegV family |
Gene: H16_A0463: conserved hypothetical protein, DegV family |
Gene: RALTA_A0406: conserved hypothetical protein, DegV family |
conserved hypothetical protein, DegV family |
| echH |
Gene: RS04419: Enoyl-CoA hydratase (EC 4.2.1.17) |
|
Gene: Rmet_0389: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Reut_A0450: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: H16_A0464: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: RALTA_A0407: Enoyl-CoA hydratase (EC 4.2.1.17) |
Enoyl-CoA hydratase (EC 4.2.1.17) |
| CRON 2. | |||||||
| etfB |
*
Ralstonia solanacearum GMI1000 Site: position = -95 score = 5.20422 sequence = TAGCACGACCGTTCGT Gene: RSc0923: Electron transfer flavoprotein, beta subunit |
*
Ralstonia pickettii 12J Site: position = -96 score = 5.11798 sequence = TAGCACGACCGTTCGG Gene: Rpic_0793: Electron transfer flavoprotein, beta subunit |
*
Ralstonia metallidurans CH34 Site: position = -48 score = 5.47857 sequence = TAGTACGATCGTTCGA Gene: Rmet_0737: Electron transfer flavoprotein, beta subunit |
*
Ralstonia eutropha JMP134 Site: position = -97 score = 5.47857 sequence = TAGTACGATCGTTCGA Gene: Reut_A2550: Electron transfer flavoprotein, beta subunit |
*
Ralstonia eutropha H16 Site: position = -98 score = 5.47857 sequence = TAGTACGATCGTTCGA Gene: H16_A0814: Electron transfer flavoprotein, beta subunit |
*
Cupriavidus taiwanensis Site: position = -98 score = 5.47857 sequence = TAGTACGATCGTTCGA Gene: RALTA_A0795: Electron transfer flavoprotein, beta subunit |
Electron transfer flavoprotein, beta subunit |
| etfA |
Gene: RSc0924: Electron transfer flavoprotein alpha subunit |
Gene: Rpic_0794: Electron transfer flavoprotein alpha subunit |
Gene: Rmet_0738: Electron transfer flavoprotein alpha subunit |
Gene: Reut_A2549: Electron transfer flavoprotein alpha subunit |
Gene: H16_A0815: Electron transfer flavoprotein alpha subunit |
Gene: RALTA_A0796: Electron transfer flavoprotein alpha subunit |
Electron transfer flavoprotein alpha subunit |
| acdH2 |
Gene: RS04489: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Rpic_0795: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Rmet_0739: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Reut_A2548: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: H16_A0816: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: RALTA_A0797: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Acyl-CoA dehydrogenase (EC 1.3.99.3) |
| CRON 3. | |||||||
| etfD |
*
Ralstonia solanacearum GMI1000 Site: position = -120 score = 5.60779 sequence = TCGAACGACCGTTCAA Gene: RSc1567: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Ralstonia pickettii 12J Site: position = -121 score = 5.23688 sequence = TCGAACGATCGTTCAG Gene: Rpic_1986: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Ralstonia metallidurans CH34 Site: position = -243 score = 5.35024 sequence = AAGAACGGTCGTTCAA Gene: Rmet_1146: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Ralstonia eutropha JMP134 Site: position = -211 score = 5.10722 sequence = AAGAACGACCGTTCCA Gene: Reut_A1262: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Ralstonia eutropha H16 Site: position = -248 score = 5.10722 sequence = AAGAACGACCGTTCCA Gene: H16_A1324: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Cupriavidus taiwanensis Site: position = -288 score = 5.10722 sequence = AAGAACGACCGTTCCA Gene: RALTA_A1245: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
| CRON 4. | |||||||
| fadD2 |
*
Ralstonia solanacearum GMI1000 Site: position = -58 score = 5.34325 sequence = TAGAACGATCGTTCAG Gene: RSc0780: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Ralstonia pickettii 12J Site: position = -60 score = 5.36645 sequence = TAGAACGATCGTTCGG Gene: Rpic_0727: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Ralstonia metallidurans CH34 Site: position = -106 score = 5.264 sequence = TAGAACGGTCGTTCAG Gene: Rmet_2635: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Ralstonia eutropha JMP134 Site: position = -73 score = 5.36645 sequence = TAGAACGATCGTTCGG Gene: Reut_A0823: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Ralstonia eutropha H16 Site: position = -74 score = 5.36645 sequence = TAGAACGATCGTTCGG Gene: H16_A2794: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Cupriavidus taiwanensis Site: position = -73 score = 5.36645 sequence = TAGAACGATCGTTCGG Gene: RALTA_A2284: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
| CRON 5. | |||||||
| RSc1772 |
*
Ralstonia solanacearum GMI1000 Site: position = 41 score = 4.97934 sequence = AAGAACGATCGTTCAG Gene: RS02959: Alpha/beta hydrolase fold-3 domain protein |
*
Ralstonia pickettii 12J Site: position = -27 score = 5.34325 sequence = TAGAACGATCGTTCAG Gene: Rpic_1434: Alpha/beta hydrolase fold-3 domain protein |
*
Ralstonia metallidurans CH34 Site: position = 36 score = 5.15764 sequence = TCGAACGACCGTTCAG Gene: Rmet_1843: Alpha/beta hydrolase fold-3 domain protein |
*
Ralstonia eutropha JMP134 Site: position = 12 score = 5.24388 sequence = TCGAACGACCGTTCAC Gene: Reut_A1419: Alpha/beta hydrolase fold-3 domain protein |
*
Ralstonia eutropha H16 Site: position = -97 score = 5.32312 sequence = TCGAACGATCGTTCAC Gene: H16_A1554: Alpha/beta hydrolase fold-3 domain protein |
*
Cupriavidus taiwanensis Site: position = -97 score = 5.32312 sequence = TCGAACGATCGTTCAC Gene: RALTA_A1480: Alpha/beta hydrolase fold-3 domain protein |
Alpha/beta hydrolase fold-3 domain protein |
| h16_A1555 |
|
|
Gene: Rmet_1842: conserved hypothetical protein, UPF0065 |
Gene: Reut_A1420: conserved hypothetical protein, UPF0065 |
Gene: H16_A1555: conserved hypothetical protein, UPF0065 |
Gene: RALTA_A1481: conserved hypothetical protein, UPF0065 |
conserved hypothetical protein, UPF0065 |
| Rsc1773 |
Gene: RS02960: putative 4-hydroxybenzoyl-CoA thioesterase |
Gene: Rpic_1433: putative 4-hydroxybenzoyl-CoA thioesterase |
Gene: Rmet_1841: putative 4-hydroxybenzoyl-CoA thioesterase |
Gene: Reut_A1421: putative 4-hydroxybenzoyl-CoA thioesterase |
Gene: H16_A1556: putative 4-hydroxybenzoyl-CoA thioesterase |
Gene: RALTA_A1482: putative 4-hydroxybenzoyl-CoA thioesterase |
putative 4-hydroxybenzoyl-CoA thioesterase |
| Rsc1774 |
Gene: RS02961: GCN5-related N-acetyltransferase |
Gene: Rpic_1432: GCN5-related N-acetyltransferase |
Gene: Rmet_1833: GCN5-related N-acetyltransferase |
Gene: Reut_A1429: GCN5-related N-acetyltransferase |
Gene: H16_A1564: GCN5-related N-acetyltransferase |
Gene: RALTA_A1490: GCN5-related N-acetyltransferase |
GCN5-related N-acetyltransferase |
| CRON 6. | |||||||
| fadB |
*
Ralstonia solanacearum GMI1000 Site: position = -101 score = 5.54493 sequence = TTGAACGACCGTGCTA Gene: RS02946: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Ralstonia pickettii 12J Site: position = -141 score = 5.54493 sequence = TTGAACGACCGTGCTA Gene: Rpic_1447: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Ralstonia metallidurans CH34 Site: position = -165 score = 5.54493 sequence = TTGAACGACCGTGCTA Gene: Rmet_1855: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Ralstonia eutropha JMP134 Site: position = -203 score = 5.54493 sequence = TTGAACGACCGTGCTA Gene: Reut_A1405: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Ralstonia eutropha H16 Site: position = -214 score = 5.54493 sequence = TTGAACGACCGTGCTA Gene: H16_A1526: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Cupriavidus taiwanensis Site: position = -218 score = 5.54493 sequence = TTGAACGACCGTGCTA Gene: RALTA_A1467: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
| pncA |
Gene: RSc1760: Nicotinamidase (EC 3.5.1.19) |
Gene: Rpic_1446: Nicotinamidase (EC 3.5.1.19) |
Gene: Rmet_1854: Nicotinamidase (EC 3.5.1.19) |
Gene: Reut_A1406: Nicotinamidase (EC 3.5.1.19) |
Gene: H16_A1527: Nicotinamidase (EC 3.5.1.19) |
Gene: RALTA_A1468: Nicotinamidase (EC 3.5.1.19) |
Nicotinamidase (EC 3.5.1.19) |
| fadA |
Gene: RS02948: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: Rpic_1445: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: Rmet_1853: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: Reut_A1407: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: H16_A1528: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: RALTA_A1469: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
| paaI |
|
|
|
|
Gene: H16_A1529: phenylacetic acid degradation protein PaaI |
Gene: RALTA_A1470: phenylacetic acid degradation protein PaaI |
phenylacetic acid degradation protein PaaI |
| acdH3 |
Gene: RS02949: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Rpic_1444: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Rmet_1852: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Reut_A1408: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: H16_A1530: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: RALTA_A1471: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Acyl-CoA dehydrogenase (EC 1.3.99.3) |
| CRON 7. | |||||||
| acsA |
|
|
*
Ralstonia metallidurans CH34 Site: position = -16 score = 5.37344 sequence = TAGAACGGTCGTTCGC Gene: Rmet_1061: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
*
Ralstonia eutropha JMP134 Site: position = -49 score = 5.37344 sequence = TAGAACGACCGTTCGC Gene: Reut_A1097: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
*
Ralstonia eutropha H16 Site: position = -91 score = 5.45268 sequence = TAGAACGATCGTTCGC Gene: H16_A1197: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
*
Cupriavidus taiwanensis Site: position = -95 score = 5.45268 sequence = TAGAACGATCGTTCGC Gene: RALTA_A1174: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
| CRON 8. | |||||||
| nppD |
Gene: RS00690: 2-nitropropane dioxygenase NPD |
Gene: Rpic_0096: 2-nitropropane dioxygenase NPD |
*
Ralstonia metallidurans CH34 Site: position = -39 score = 5.44401 sequence = TCGAACGATCGTTCCA Gene: Rmet_0222: 2-nitropropane dioxygenase NPD |
*
Ralstonia eutropha JMP134 Site: position = -58 score = 5.24388 sequence = TCGAACGACCGTTCAT Gene: Reut_A0268: 2-nitropropane dioxygenase NPD |
*
Ralstonia eutropha H16 Site: position = -59 score = 5.24388 sequence = TCGAACGACCGTTCAT Gene: H16_A0293: 2-nitropropane dioxygenase NPD |
*
Cupriavidus taiwanensis Site: position = -58 score = 5.24388 sequence = TCGAACGACCGTTCAC Gene: RALTA_A0233: 2-nitropropane dioxygenase NPD |
2-nitropropane dioxygenase NPD |
| CRON 9. | |||||||
| liuR |
Gene: RS03247: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Gene: Rpic_0130: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Ralstonia metallidurans CH34 Site: position = -32 score = 4.95921 sequence = ACGAACGATCGTTCAC Gene: Rmet_0102: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Ralstonia eutropha JMP134 Site: position = -32 score = 4.87997 sequence = ACGAACGACCGTTCAC Gene: Reut_A0133: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Ralstonia eutropha H16 Site: position = -32 score = 4.87997 sequence = ACGAACGACCGTTCAC Gene: H16_A0165: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Cupriavidus taiwanensis Site: position = -32 score = 4.87997 sequence = ACGAACGACCGTTCAC Gene: RALTA_A0108: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
| CRON 10. | |||||||
| Rmet_0145 |
|
|
|
*
Ralstonia eutropha JMP134 Site: position = -10 score = 5.56813 sequence = TCGAACGACCGTGCTA Gene: Reut_A0190: TesB-like acyl-CoA thioesterase 2 |
*
Ralstonia eutropha H16 Site: position = -46 score = 5.64737 sequence = TCGAACGATCGTGCTA Gene: H16_A0217: TesB-like acyl-CoA thioesterase 2 |
*
Cupriavidus taiwanensis Site: position = -43 score = 5.45268 sequence = GCGAACGATCGTTCTA Gene: RALTA_A0160: TesB-like acyl-CoA thioesterase 2 |
TesB-like acyl-CoA thioesterase 2 |
| CRON 11. | |||||||
| paaH1 |
*
Ralstonia solanacearum GMI1000 Site: position = -49 score = 4.86982 sequence = TCGCACGCTCGTGCTA Gene: RSc2013: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation |
*
Ralstonia pickettii 12J Site: position = -53 score = 4.86982 sequence = TCGCACGCTCGTGCTA Gene: Rpic_2168: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation |
*
Ralstonia metallidurans CH34 Site: position = -44 score = 4.94544 sequence = ACGTACGATCGTGCTA Gene: Rmet_0974: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation |
*
Ralstonia eutropha JMP134 Site: position = -43 score = 4.94544 sequence = ACGTACGATCGTGCTA Gene: Reut_A1010: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation |
*
Ralstonia eutropha H16 Site: position = -43 score = 4.94544 sequence = ACGTACGATCGTGCTA Gene: H16_A1102: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation |
*
Cupriavidus taiwanensis Site: position = -31 score = 4.94544 sequence = ACGTACGATCGTGCTA Gene: RALTA_A1087: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation |
3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation |
| paaG4 |
Gene: RSc2014: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Rpic_2169: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Rmet_0973: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Reut_A1009: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: H16_A1101: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: RALTA_A1086: Enoyl-CoA hydratase (EC 4.2.1.17) |
Enoyl-CoA hydratase (EC 4.2.1.17) |
| BPSL1236 |
Gene: RS03583: Putative phosphoglycerate mutase |
Gene: Rpic_2170: Putative phosphoglycerate mutase |
|
Gene: Reut_A1008: Putative phosphoglycerate mutase |
Gene: H16_A1100: Putative phosphoglycerate mutase |
Gene: RALTA_A1085: Putative phosphoglycerate mutase |
Putative phosphoglycerate mutase |
| BPSL1235 |
Gene: RS03584: Phosphotransferase enzyme family protein |
Gene: Rpic_2171: Phosphotransferase enzyme family protein |
Gene: Rmet_0972: Phosphotransferase enzyme family protein |
Gene: Reut_A1007: Phosphotransferase enzyme family protein |
Gene: H16_A1099: Phosphotransferase enzyme family protein |
Gene: RALTA_A1084: Phosphotransferase enzyme family protein |
Phosphotransferase enzyme family protein |
| CRON 12. | |||||||
| fadD1 |
*
Ralstonia solanacearum GMI1000 Site: position = -47 score = 5.21044 sequence = TCGAACGACCATTCGA Gene: RSc2857: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Ralstonia pickettii 12J Site: position = -46 score = 4.84653 sequence = ACGAACGACCATTCGA Gene: Rpic_3104: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Ralstonia metallidurans CH34 Site: position = -32 score = 4.73709 sequence = TCGAACGACCATTCAG Gene: Rmet_3148: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Ralstonia eutropha JMP134 Site: position = -34 score = 4.73709 sequence = TCGAACGACCATTCAG Gene: Reut_A2994: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Ralstonia eutropha H16 Site: position = -34 score = 4.73709 sequence = TCGAACGACCATTCAG Gene: H16_A3288: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Cupriavidus taiwanensis Site: position = -35 score = 4.73709 sequence = TCGAACGACCATTCAG Gene: RALTA_A2744: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
| CRON 13. | |||||||
| RSc2046 |
*
Ralstonia solanacearum GMI1000 Site: position = -63 score = 5.54493 sequence = TAGCACGACCGTTCAA Gene: RS03611: conserved hypothetical protein, DUF1178 |
*
Ralstonia pickettii 12J Site: position = -85 score = 5.09785 sequence = GCGAACGGTCGTGCGA Site: position = -63 score = 5.18102 sequence = TAGCACGACCGTTCAC Gene: Rpic_2198: conserved hypothetical protein, DUF1178 |
*
Ralstonia metallidurans CH34 Site: position = -62 score = 5.18102 sequence = TAGCACGACCGTTCAC Gene: Rmet_0943: conserved hypothetical protein, DUF1178 |
*
Ralstonia eutropha JMP134 Site: position = -64 score = 5.18102 sequence = TAGCACGACCGTTCAC Gene: Reut_A0977: conserved hypothetical protein, DUF1178 |
*
Ralstonia eutropha H16 Site: position = -87 score = 5.2872 sequence = CCGAACGGTCGTTCTA Site: position = -64 score = 5.18102 sequence = TAGCACGACCGTTCAC Gene: H16_A1066: conserved hypothetical protein, DUF1178 |
*
Cupriavidus taiwanensis Site: position = -87 score = 5.37344 sequence = ACGAACGGTCGTTCTA Site: position = -64 score = 5.18102 sequence = TAGCACGACCGTTCAC Gene: RALTA_A1050: conserved hypothetical protein, DUF1178 |
conserved hypothetical protein, DUF1178 |
| acdQ |
Gene: RS03610: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
Gene: Rpic_2197: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
Gene: Rmet_0944: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
Gene: Reut_A0978: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
Gene: H16_A1067: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
Gene: RALTA_A1051: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
Acyl-CoA dehydrogenase (EC 1.3.99.-) |
| acdP |
Gene: RS03609: acyl-CoA dehydrogenase domain protein |
Gene: Rpic_2196: acyl-CoA dehydrogenase domain protein |
Gene: Rmet_0945: acyl-CoA dehydrogenase domain protein |
Gene: Reut_A0979: acyl-CoA dehydrogenase domain protein |
Gene: H16_A1068: acyl-CoA dehydrogenase domain protein |
Gene: RALTA_A1052: acyl-CoA dehydrogenase domain protein |
acyl-CoA dehydrogenase domain protein |
| maoC |
Gene: RS03608: Putative (R)-specific enoyl-CoA hydratase, MaoC- like |
Gene: Rpic_2195: Putative (R)-specific enoyl-CoA hydratase, MaoC- like |
Gene: Rmet_0946: Putative (R)-specific enoyl-CoA hydratase, MaoC- like |
Gene: Reut_A0980: Putative (R)-specific enoyl-CoA hydratase, MaoC- like |
Gene: H16_A1069: Putative (R)-specific enoyl-CoA hydratase, MaoC- like |
Gene: RALTA_A1053: Putative (R)-specific enoyl-CoA hydratase, MaoC- like |
Putative (R)-specific enoyl-CoA hydratase, MaoC- like |
| echI |
Gene: RS03607: MaoC domain protein dehydratase |
Gene: Rpic_2194: MaoC domain protein dehydratase |
Gene: Rmet_0947: MaoC domain protein dehydratase |
Gene: Reut_A0981: MaoC domain protein dehydratase |
Gene: H16_A1070: MaoC domain protein dehydratase |
Gene: RALTA_A1054: MaoC domain protein dehydratase |
MaoC domain protein dehydratase |
| CRON 14. | |||||||
| bktB |
*
Ralstonia solanacearum GMI1000 Site: position = -59 score = 4.79731 sequence = TCGAACGATCGTTTGC Gene: RSc1637: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
*
Ralstonia pickettii 12J Site: position = -59 score = 4.73394 sequence = GCGAACGGTCGTGCGT Gene: Rpic_1910: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
*
Ralstonia metallidurans CH34 Site: position = -72 score = 4.6715 sequence = AAGTACGGTCGTTCGT Gene: Rmet_1362: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
*
Ralstonia eutropha JMP134 Site: position = -71 score = 5.11466 sequence = AAGTACGATCGTTCGA Gene: Reut_A1353: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
*
Ralstonia eutropha H16 Site: position = -73 score = 4.50632 sequence = AAGTACGCTCGTTCGA Gene: H16_A1445: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
*
Cupriavidus taiwanensis Site: position = -72 score = 4.6483 sequence = AAGTACGACCGTTCAC Gene: RALTA_A1359: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
| RSc1638 |
Gene: RS04012: hypothetical protein |
Gene: Rpic_1909: hypothetical protein |
Gene: Rmet_1363: hypothetical protein |
Gene: Reut_A1354: hypothetical protein |
Gene: H16_A1446: hypothetical protein |
Gene: RALTA_A1360: hypothetical protein |
hypothetical protein |
| CRON 15. | |||||||
| alkK |
*
Ralstonia solanacearum GMI1000 Site: position = -42 score = 4.58194 sequence = TAGAACGGTTGTTCAG Gene: RSc1749: Medium-chain-fatty-acid-CoA ligase |
*
Ralstonia pickettii 12J Site: position = -34 score = 4.58194 sequence = TAGAACGGTTGTTCAG Gene: Rpic_1455: Medium-chain-fatty-acid-CoA ligase |
*
Ralstonia metallidurans CH34 Site: position = -73 score = 4.6014 sequence = TAGCACGATTGTTCGT Gene: Rmet_1863: Medium-chain-fatty-acid-CoA ligase |
*
Ralstonia eutropha JMP134 Site: position = -54 score = 4.69137 sequence = TAGAACGGTTGTTCGT Gene: Reut_A1398: Medium-chain-fatty-acid-CoA ligase |
*
Ralstonia eutropha H16 Site: position = -55 score = 4.35334 sequence = TAGTACGGTTGTTCGT Gene: H16_A1519: Medium-chain-fatty-acid-CoA ligase |
*
Cupriavidus taiwanensis Site: position = -73 score = 4.61862 sequence = GCGAACGACCGTCCAA Site: position = -54 score = 4.35334 sequence = TAGTACGGTTGTTCGT Gene: RALTA_A1460: Medium-chain-fatty-acid-CoA ligase |
Medium-chain-fatty-acid-CoA ligase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |