Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FadP in Ralstonia pickettii 12J

Properties
Regulator type: Transcription factor
TF locus tag: Rpic_0347
Regulator family: TetR
Regulation mode:
Biological process: Fatty acid degradation
Effector:
Regulog: FadP - Ralstonia
Statistics of regulated genes:
- Genes 28
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 85 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -121
Score: 5.2
Sequence: TCGAACGATCGTTCAG
Locus tag: Rpic_1986
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Rpic_1986
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -96
Score: 5.1
Sequence: TAGCACGACCGTTCGG
Locus tag: Rpic_0793
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Rpic_0794
Name: etfA
Funciton: Electron transfer flavoprotein alpha subunit
Locus tag: Rpic_0795
Name: acdH2
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Rpic_0793
etfB
Electron transfer flavoprotein, beta subunit
Rpic_0794
etfA
Electron transfer flavoprotein alpha subunit
Rpic_0795
acdH2
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -136
Score: 5.6
Sequence: TTGAACGACCGTTCGA
Locus tag: Rpic_0347
Name: fadP
Funciton: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
Locus tag: Rpic_0348
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: Rpic_0349
Name: acdB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Locus tag: Rpic_0350
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Rpic_0347
fadP
Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
Rpic_0348
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Rpic_0349
acdB
Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Rpic_0350
acdA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -60
Score: 5.4
Sequence: TAGAACGATCGTTCGG
Locus tag: Rpic_0727
Name: fadD2
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Rpic_0727
fadD2
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -27
Score: 5.3
Sequence: TAGAACGATCGTTCAG
Locus tag: Rpic_1434
Name: RSc1772
Funciton: Alpha/beta hydrolase fold-3 domain protein
Locus tag: Rpic_1433
Name: Rsc1773
Funciton: putative 4-hydroxybenzoyl-CoA thioesterase
Locus tag: Rpic_1432
Name: Rsc1774
Funciton: GCN5-related N-acetyltransferase
Rpic_1434
RSc1772
Alpha/beta hydrolase fold-3 domain protein
Rpic_1433
Rsc1773
putative 4-hydroxybenzoyl-CoA thioesterase
Rpic_1432
Rsc1774
GCN5-related N-acetyltransferase
Position: -141
Score: 5.5
Sequence: TTGAACGACCGTGCTA
Locus tag: Rpic_1447
Name: fadB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Rpic_1446
Name: pncA
Funciton: Nicotinamidase (EC 3.5.1.19)
Locus tag: Rpic_1445
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Rpic_1447
fadB
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Rpic_1446
pncA
Nicotinamidase (EC 3.5.1.19)
Rpic_1445
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Position: -53
Score: 4.9
Sequence: TCGCACGCTCGTGCTA
Locus tag: Rpic_2168
Name: paaH1
Funciton: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
Locus tag: Rpic_2169
Name: paaG4
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Rpic_2170
Name: BPSL1236
Funciton: Putative phosphoglycerate mutase
Locus tag: Rpic_2171
Name: BPSL1235
Funciton: Phosphotransferase enzyme family protein
Rpic_2168
paaH1
3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
Rpic_2169
paaG4
Enoyl-CoA hydratase (EC 4.2.1.17)
Rpic_2170
BPSL1236
Putative phosphoglycerate mutase
Rpic_2171
BPSL1235
Phosphotransferase enzyme family protein
Position: -46
Score: 4.8
Sequence: ACGAACGACCATTCGA
Locus tag: Rpic_3104
Name: fadD1
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Rpic_3104
fadD1
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -85
Score: 5.1
Sequence: GCGAACGGTCGTGCGA
Position: -63
Score: 5.2
Sequence: TAGCACGACCGTTCAC
Locus tag: Rpic_2198
Name: RSc2046
Funciton: conserved hypothetical protein, DUF1178
Locus tag: Rpic_2197
Name: acdQ
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.-)
Locus tag: Rpic_2196
Name: acdP
Funciton: acyl-CoA dehydrogenase domain protein
Locus tag: Rpic_2195
Name: maoC
Funciton: Putative (R)-specific enoyl-CoA hydratase, MaoC- like
Locus tag: Rpic_2194
Name: echI
Funciton: MaoC domain protein dehydratase
Rpic_2198
RSc2046
conserved hypothetical protein, DUF1178
Rpic_2197
acdQ
Acyl-CoA dehydrogenase (EC 1.3.99.-)
Rpic_2196
acdP
acyl-CoA dehydrogenase domain protein
Rpic_2195
maoC
Putative (R)-specific enoyl-CoA hydratase, MaoC- like
Rpic_2194
echI
MaoC domain protein dehydratase
Position: -59
Score: 4.7
Sequence: GCGAACGGTCGTGCGT
Locus tag: Rpic_1910
Name: bktB
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Rpic_1909
Name: RSc1638
Funciton: hypothetical protein
Rpic_1910
bktB
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Rpic_1909
RSc1638
hypothetical protein
Position: -34
Score: 4.6
Sequence: TAGAACGGTTGTTCAG
Locus tag: Rpic_1455
Name: alkK
Funciton: Medium-chain-fatty-acid-CoA ligase
Rpic_1455
alkK
Medium-chain-fatty-acid-CoA ligase
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