Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FadP in Cupriavidus taiwanensis

Properties
Regulator type: Transcription factor
TF locus tag: RALTA_A0402
Regulator family: TetR
Regulation mode:
Biological process: Fatty acid degradation
Effector:
Regulog: FadP - Ralstonia
Statistics of regulated genes:
- Genes 36
- Operons 15
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 85 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -73
Score: 5.4
Sequence: TAGAACGATCGTTCGG
Locus tag: RALTA_A2284
Name: fadD2
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
RALTA_A2284
fadD2
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -288
Score: 5.1
Sequence: AAGAACGACCGTTCCA
Locus tag: RALTA_A1245
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
RALTA_A1245
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -98
Score: 5.5
Sequence: TAGTACGATCGTTCGA
Locus tag: RALTA_A0795
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: RALTA_A0796
Name: etfA
Funciton: Electron transfer flavoprotein alpha subunit
Locus tag: RALTA_A0797
Name: acdH2
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
RALTA_A0795
etfB
Electron transfer flavoprotein, beta subunit
RALTA_A0796
etfA
Electron transfer flavoprotein alpha subunit
RALTA_A0797
acdH2
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -141
Score: 4.9
Sequence: CTGAACGACCGTTCTT
Locus tag: RALTA_A0402
Name: fadP
Funciton: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
Locus tag: RALTA_A0403
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: RALTA_A0404
Name: acdB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Locus tag: RALTA_A0405
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: RALTA_A0406
Name: degV
Funciton: conserved hypothetical protein, DegV family
Locus tag: RALTA_A0407
Name: echH
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
RALTA_A0402
fadP
Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
RALTA_A0403
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
RALTA_A0404
acdB
Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
RALTA_A0405
acdA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
RALTA_A0406
degV
conserved hypothetical protein, DegV family
RALTA_A0407
echH
Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -97
Score: 5.3
Sequence: TCGAACGATCGTTCAC
Locus tag: RALTA_A1480
Name: RSc1772
Funciton: Alpha/beta hydrolase fold-3 domain protein
Locus tag: RALTA_A1481
Name: h16_A1555
Funciton: conserved hypothetical protein, UPF0065
Locus tag: RALTA_A1482
Name: Rsc1773
Funciton: putative 4-hydroxybenzoyl-CoA thioesterase
RALTA_A1480
RSc1772
Alpha/beta hydrolase fold-3 domain protein
RALTA_A1481
h16_A1555
conserved hypothetical protein, UPF0065
RALTA_A1482
Rsc1773
putative 4-hydroxybenzoyl-CoA thioesterase
Position: -218
Score: 5.5
Sequence: TTGAACGACCGTGCTA
Locus tag: RALTA_A1467
Name: fadB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: RALTA_A1468
Name: pncA
Funciton: Nicotinamidase (EC 3.5.1.19)
Locus tag: RALTA_A1469
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: RALTA_A1470
Name: paaI
Funciton: phenylacetic acid degradation protein PaaI
Locus tag: RALTA_A1471
Name: acdH3
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
RALTA_A1467
fadB
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
RALTA_A1468
pncA
Nicotinamidase (EC 3.5.1.19)
RALTA_A1469
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
RALTA_A1470
paaI
phenylacetic acid degradation protein PaaI
RALTA_A1471
acdH3
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -95
Score: 5.5
Sequence: TAGAACGATCGTTCGC
Locus tag: RALTA_A1174
Name: acsA
Funciton: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
RALTA_A1174
acsA
Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Position: -58
Score: 5.2
Sequence: TCGAACGACCGTTCAC
Locus tag: RALTA_A0233
Name: nppD
Funciton: 2-nitropropane dioxygenase NPD
RALTA_A0233
nppD
2-nitropropane dioxygenase NPD
Position: -32
Score: 4.9
Sequence: ACGAACGACCGTTCAC
Locus tag: RALTA_A0108
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
RALTA_A0108
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Position: -43
Score: 5.5
Sequence: GCGAACGATCGTTCTA
Locus tag: RALTA_A0160
Name: Rmet_0145
Funciton: TesB-like acyl-CoA thioesterase 2
RALTA_A0160
Rmet_0145
TesB-like acyl-CoA thioesterase 2
Position: -31
Score: 4.9
Sequence: ACGTACGATCGTGCTA
Locus tag: RALTA_A1087
Name: paaH1
Funciton: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
Locus tag: RALTA_A1086
Name: paaG4
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: RALTA_A1085
Name: BPSL1236
Funciton: Putative phosphoglycerate mutase
Locus tag: RALTA_A1084
Name: BPSL1235
Funciton: Phosphotransferase enzyme family protein
RALTA_A1087
paaH1
3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
RALTA_A1086
paaG4
Enoyl-CoA hydratase (EC 4.2.1.17)
RALTA_A1085
BPSL1236
Putative phosphoglycerate mutase
RALTA_A1084
BPSL1235
Phosphotransferase enzyme family protein
Position: -35
Score: 4.7
Sequence: TCGAACGACCATTCAG
Locus tag: RALTA_A2744
Name: fadD1
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
RALTA_A2744
fadD1
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -87
Score: 5.4
Sequence: ACGAACGGTCGTTCTA
Position: -64
Score: 5.2
Sequence: TAGCACGACCGTTCAC
Locus tag: RALTA_A1050
Name: RSc2046
Funciton: conserved hypothetical protein, DUF1178
Locus tag: RALTA_A1051
Name: acdQ
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.-)
Locus tag: RALTA_A1052
Name: acdP
Funciton: acyl-CoA dehydrogenase domain protein
Locus tag: RALTA_A1053
Name: maoC
Funciton: Putative (R)-specific enoyl-CoA hydratase, MaoC- like
Locus tag: RALTA_A1054
Name: echI
Funciton: MaoC domain protein dehydratase
RALTA_A1050
RSc2046
conserved hypothetical protein, DUF1178
RALTA_A1051
acdQ
Acyl-CoA dehydrogenase (EC 1.3.99.-)
RALTA_A1052
acdP
acyl-CoA dehydrogenase domain protein
RALTA_A1053
maoC
Putative (R)-specific enoyl-CoA hydratase, MaoC- like
RALTA_A1054
echI
MaoC domain protein dehydratase
Position: -72
Score: 4.6
Sequence: AAGTACGACCGTTCAC
Locus tag: RALTA_A1359
Name: bktB
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: RALTA_A1360
Name: RSc1638
Funciton: hypothetical protein
RALTA_A1359
bktB
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
RALTA_A1360
RSc1638
hypothetical protein
Position: -73
Score: 4.6
Sequence: GCGAACGACCGTCCAA
Position: -54
Score: 4.4
Sequence: TAGTACGGTTGTTCGT
Locus tag: RALTA_A1460
Name: alkK
Funciton: Medium-chain-fatty-acid-CoA ligase
RALTA_A1460
alkK
Medium-chain-fatty-acid-CoA ligase
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise