Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FadP in Ralstonia solanacearum GMI1000

Properties
Regulator type: Transcription factor
TF locus tag: RS04423
Regulator family: TetR
Regulation mode:
Biological process: Fatty acid degradation
Effector:
Regulog: FadP - Ralstonia
Statistics of regulated genes:
- Genes 30
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 85 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -120
Score: 5.6
Sequence: TCGAACGACCGTTCAA
Locus tag: RSc1567
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
RSc1567
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -95
Score: 5.2
Sequence: TAGCACGACCGTTCGT
Locus tag: RSc0923
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: RSc0924
Name: etfA
Funciton: Electron transfer flavoprotein alpha subunit
Locus tag: RS04489
Name: acdH2
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
RSc0923
etfB
Electron transfer flavoprotein, beta subunit
RSc0924
etfA
Electron transfer flavoprotein alpha subunit
RS04489
acdH2
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -136
Score: 5.7
Sequence: TTGAACGATCGTTCGA
Locus tag: RS04423
Name: fadP
Funciton: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
Locus tag: RS04422
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: RS04421
Name: acdB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Locus tag: RS04420
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: RS04419
Name: echH
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
RS04423
fadP
Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
RS04422
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
RS04421
acdB
Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
RS04420
acdA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
RS04419
echH
Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -58
Score: 5.3
Sequence: TAGAACGATCGTTCAG
Locus tag: RSc0780
Name: fadD2
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
RSc0780
fadD2
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: 41
Score: 5
Sequence: AAGAACGATCGTTCAG
Locus tag: RS02959
Name: RSc1772
Funciton: Alpha/beta hydrolase fold-3 domain protein
Locus tag: RS02960
Name: Rsc1773
Funciton: putative 4-hydroxybenzoyl-CoA thioesterase
Locus tag: RS02961
Name: Rsc1774
Funciton: GCN5-related N-acetyltransferase
RS02959
RSc1772
Alpha/beta hydrolase fold-3 domain protein
RS02960
Rsc1773
putative 4-hydroxybenzoyl-CoA thioesterase
RS02961
Rsc1774
GCN5-related N-acetyltransferase
Position: -101
Score: 5.5
Sequence: TTGAACGACCGTGCTA
Locus tag: RS02946
Name: fadB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: RSc1760
Name: pncA
Funciton: Nicotinamidase (EC 3.5.1.19)
Locus tag: RS02948
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: RS02949
Name: acdH3
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
RS02946
fadB
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
RSc1760
pncA
Nicotinamidase (EC 3.5.1.19)
RS02948
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
RS02949
acdH3
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -49
Score: 4.9
Sequence: TCGCACGCTCGTGCTA
Locus tag: RSc2013
Name: paaH1
Funciton: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
Locus tag: RSc2014
Name: paaG4
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: RS03583
Name: BPSL1236
Funciton: Putative phosphoglycerate mutase
Locus tag: RS03584
Name: BPSL1235
Funciton: Phosphotransferase enzyme family protein
RSc2013
paaH1
3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
RSc2014
paaG4
Enoyl-CoA hydratase (EC 4.2.1.17)
RS03583
BPSL1236
Putative phosphoglycerate mutase
RS03584
BPSL1235
Phosphotransferase enzyme family protein
Position: -47
Score: 5.2
Sequence: TCGAACGACCATTCGA
Locus tag: RSc2857
Name: fadD1
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
RSc2857
fadD1
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -63
Score: 5.5
Sequence: TAGCACGACCGTTCAA
Locus tag: RS03611
Name: RSc2046
Funciton: conserved hypothetical protein, DUF1178
Locus tag: RS03610
Name: acdQ
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.-)
Locus tag: RS03609
Name: acdP
Funciton: acyl-CoA dehydrogenase domain protein
Locus tag: RS03608
Name: maoC
Funciton: Putative (R)-specific enoyl-CoA hydratase, MaoC- like
Locus tag: RS03607
Name: echI
Funciton: MaoC domain protein dehydratase
RS03611
RSc2046
conserved hypothetical protein, DUF1178
RS03610
acdQ
Acyl-CoA dehydrogenase (EC 1.3.99.-)
RS03609
acdP
acyl-CoA dehydrogenase domain protein
RS03608
maoC
Putative (R)-specific enoyl-CoA hydratase, MaoC- like
RS03607
echI
MaoC domain protein dehydratase
Position: -59
Score: 4.8
Sequence: TCGAACGATCGTTTGC
Locus tag: RSc1637
Name: bktB
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: RS04012
Name: RSc1638
Funciton: hypothetical protein
RSc1637
bktB
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
RS04012
RSc1638
hypothetical protein
Position: -42
Score: 4.6
Sequence: TAGAACGGTTGTTCAG
Locus tag: RSc1749
Name: alkK
Funciton: Medium-chain-fatty-acid-CoA ligase
RSc1749
alkK
Medium-chain-fatty-acid-CoA ligase
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