Propagation of Crp regulog to Shewanella halifaxensis HAW-EB4

Reference regulog properties
Source regulog:	Crp - Shewanellaceae
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	repressor (activator)
Biological process:	Carbon catabolism
Effector:	Cyclic 3',5'-AMP
Phylum:	Proteobacteria
Propagated regulon:
Target genome	Shewanella halifaxensis HAW-EB4
Orthologous TF(s)	Shal_3603
Regulated genes	224

Built upon 2713 sites [see more]

Predicted regulatory interactions in *Shewanella halifaxensis HAW-EB4*
	Locus tag	Position	Score	Sequence
Position: -134 Score: 4.4 Sequence: TTTTGTGATTAGTCGCACACTG Locus tag: Shal_0016
	Shal_0016	-134	4.4	TTTTGTGATTAGTCGCACACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadB
Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Shewanella oneidensis MR-1	SO0021	-210	4.1	CTTTGTGCAGTGTATCACAAAG
Shewanella putrefaciens CN-32	Sputcn32_0013	-210	3.7	CTCTGTGCAGTGTATCACAAAG
Shewanella sp W3-18-1	Sputw3181_0013	-210	3.7	CTCTGTGCAGTGTATCACAAAG
Shewanella sp ANA-3	Shewana3_0024	-210	4.1	CTTTGTGCAGTGTATCACAAAG
Shewanella sp MR-4	Shewmr4_0018	-210	4.1	CTTTGTGCAGTGTATCACAAAG
Shewanella sp MR-7	Shewmr7_0016	-210	4.1	CTTTGTGCAGTGTATCACAAAG
Shewanella baltica OS155	Sbal_0021	-210	3.7	CTCTGTGCAGTGTATCACAAAG
Shewanella amazonensis SB2B	Sama_0032	-193	3.8	TGCTGTGCAGTGTATCACAAAG
Shewanella pealeana ATCC 700345	Spea_0018	-134	4.6	TTTTGTGATTCGTCGCACACTG
Shewanella halifaxensis HAW-EB4	Shal_0016	-134	4.4	TTTTGTGATTAGTCGCACACTG
Shewanella piezotolerans WP3	swp_0035	-127	4.4	TTATGTGATTAGTCGCACACTG

Position: -250 Score: 4 Sequence: CAGTGTGCGACTAATCACAAAA Locus tag: Shal_0017
	Shal_0017	-250	4	CAGTGTGCGACTAATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepQ
Ortholog function: Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
Shewanella oneidensis MR-1	SO0022	-237	4.4	CTTTGTGATACACTGCACAAAG
Shewanella putrefaciens CN-32	Sputcn32_0014	-302	4.2	CTTTGTGATACACTGCACAGAG
Shewanella sp W3-18-1	Sputw3181_0014	-302	4.2	CTTTGTGATACACTGCACAGAG
Shewanella sp ANA-3	Shewana3_0025	-255	4.4	CTTTGTGATACACTGCACAAAG
Shewanella sp MR-4	Shewmr4_0019	-255	4.4	CTTTGTGATACACTGCACAAAG
Shewanella sp MR-7	Shewmr7_0017	-255	4.4	CTTTGTGATACACTGCACAAAG
Shewanella baltica OS155	Sbal_0022	-302	4.2	CTTTGTGATACACTGCACAGAG
Shewanella amazonensis SB2B	Sama_0033	-109	4	CTTTGTGATACACTGCACAGCA
Shewanella pealeana ATCC 700345	Spea_0019	-252	4.1	CAGTGTGCGACGAATCACAAAA
Shewanella halifaxensis HAW-EB4	Shal_0017	-250	4	CAGTGTGCGACTAATCACAAAA
Shewanella sediminis HAW-EB3	Ssed_0024	-48	3.8	TTTTCTGATAGATTTTACATCA

Position: -109 Score: 4.5 Sequence: TTTTGTGTTTGAGTTAACAAAA Locus tag: Shal_0063
	Shal_0063	-109	4.5	TTTTGTGTTTGAGTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0075
Ortholog function: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella frigidimarina NCIMB 400	Sfri_3973	-107	4	AAACGTGACCGTAAGCTCAAAA
Shewanella loihica PV-4	Shew_3776	-110	4.7	TTTTGTGCTCCAATTAACATTA
Shewanella pealeana ATCC 700345	Spea_4186	-109	4.3	TTTTGTGTGTTAGTTAACAAAA
Shewanella halifaxensis HAW-EB4	Shal_0063	-109	4.5	TTTTGTGTTTGAGTTAACAAAA
Shewanella woodyi ATCC 51908	Swoo_4860	-110	4.6	ATCTGTGATCGGTTTAACACTA

Position: -106 Score: 3.9 Sequence: ATTTGTGAGCCCGCTTGTATTT Locus tag: Shal_0072
	Shal_0072	-106	3.9	ATTTGTGAGCCCGCTTGTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutC
Ortholog function: histidine utilization repressor
Shewanella oneidensis MR-1	SO0096	-151	4.1	TTATGTGAGCTAGCTTGTATTT
Shewanella putrefaciens CN-32	Sputcn32_0078	-178	4.1	TTATGTGAGCTGGCTTGTATTT
Shewanella sp W3-18-1	Sputw3181_3999	-178	4.1	TTATGTGAGCTGGCTTGTATTT
Shewanella sp ANA-3	Shewana3_0099	-142	4.1	TTATGTGAGCTAGCTTGTATTT
Shewanella sp MR-4	Shewmr4_0098	-142	4.1	TTATGTGAGCCAGCTTGTATTT
Shewanella sp MR-7	Shewmr7_0093	-142	4.1	TTATGTGAGCTAGCTTGTATTT
Shewanella baltica OS155	Sbal_4253	-177	4.1	TTATGTGAGCTAGCTTGTATTT
Shewanella loihica PV-4	Shew_3758	-138	4.1	TTATGTGAGCTAGCTTGTATTT
Shewanella pealeana ATCC 700345	Spea_4170	-106	3.8	ATTTGTGAGCTAGCTTGTGTTT
Shewanella halifaxensis HAW-EB4	Shal_0072	-106	3.9	ATTTGTGAGCCCGCTTGTATTT
Shewanella piezotolerans WP3	swp_0132	-177	4.2	ATTTGTGAGCTAGCTTGTATTT
Shewanella sediminis HAW-EB3	Ssed_4448	-150	4.1	AGTTGTGATCCAACTTGTATTT
Shewanella woodyi ATCC 51908	Swoo_4839	-201	4.1	AAGTGTGATCCAACTTGTATTT

Position: -181 Score: 4.2 Sequence: TAGTTTGAACTAGATCAACTAT Position: -85 Score: 4.5 Sequence: AAATGTGATCTACTACTAATTT Locus tag: Shal_0099
	Shal_0099	-181	4.2	TAGTTTGAACTAGATCAACTAT
		-85	4.5	AAATGTGATCTACTACTAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4503
Ortholog function: formate dehydrogenase chain D (EC 1.2.1.2)
Shewanella putrefaciens CN-32	Sputcn32_0343	-187	4	AAGTTTGAAGTAGATCATCAAA
		-91	4.1	AATTGCGATAGATCACGCATTT
Shewanella sp W3-18-1	Sputw3181_3865	-131	4	AAGTTTGAAGTAGATCATCAAA
		-35	4.1	AATTGCGATAGATCACGCATTT
Shewanella sp ANA-3	Shewana3_3910	-187	4	TTGTTTGAGGTGGATCATCAAA
		-91	4	AATTGCGACGGATCACGCATTT
Shewanella sp MR-4	Shewmr4_3714	-187	4	TTGTTTGAGGTGGATCATCAAA
		-91	4	AATTGCGACGGATCACGCATTT
Shewanella sp MR-7	Shewmr7_3785	-187	4	TTGTTTGAGGTGGATCATCAAA
		-91	4	AATTGCGACGGATCACGCATTT
Shewanella baltica OS155	Sbal_4130	-187	4	TAGTTTGAACTAGATCATCAAA
Shewanella frigidimarina NCIMB 400	Sfri_0051	-139	3.7	AGATTTGCGCCAGATCACGCTT
Shewanella amazonensis SB2B	Sama_3619	-186	3.9	AAGTTTGAAGTGGATCATCAAA
Shewanella loihica PV-4	Shew_0053	-190	4	TAGTTTGAACTGGATCATCAAA
Shewanella pealeana ATCC 700345	Spea_4143	-183	4.2	TAGTTTGAACTAGATCAACTAT
		-87	3.9	AAGTGTGATCGACCACTAACTT
		-20	3.9	TTGCGTGACAAGGATAAAAAAT
Shewanella halifaxensis HAW-EB4	Shal_0099	-181	4.2	TAGTTTGAACTAGATCAACTAT
		-85	4.5	AAATGTGATCTACTACTAATTT
Shewanella piezotolerans WP3	swp_5036	-86	4.2	AAGTGTGATCTGCAGCTAACTT
		-25	4	AAAGGTAATTGAAATCTCATAA
Shewanella sediminis HAW-EB3	Ssed_4427	-153	3.9	TAACTTGAGCTGGATCATCAAT
		-59	3.8	TTAAATGAGAGAGATCACGCAT
Shewanella woodyi ATCC 51908	Swoo_4819	-163	4.3	TTTTTTGAGCTAGATCATCAAA

Position: -124 Score: 4.2 Sequence: ATAGTTGATCTAGTTCAAACTA Locus tag: Shal_0100
	Shal_0100	-124	4.2	ATAGTTGATCTAGTTCAAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4504
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO4504	-130	4	TTTGATGATCCACTTCAAACTA
Shewanella putrefaciens CN-32	Sputcn32_0342	-140	4.1	TTTGATGATCTACTTCAAACTT
Shewanella sp W3-18-1	Sputw3181_3866	-140	4.1	TTTGATGATCTACTTCAAACTT
Shewanella sp ANA-3	Shewana3_3911	-225	3.8	ATGCGTGATCCGTCGCAATTAT
		-131	3.9	TTTGATGATCCACCTCAAACAA
Shewanella sp MR-4	Shewmr4_3715	-225	3.8	ATGCGTGATCCGTCGCAATTAT
		-131	3.9	TTTGATGATCCACCTCAAACAA
Shewanella sp MR-7	Shewmr7_3786	-225	3.8	ATGCGTGATCCGTCGCAATTAT
		-131	3.9	TTTGATGATCCACCTCAAACAA
Shewanella baltica OS155	Sbal_4131	-136	4.2	TTTGATGATCTAGTTCAAACTA
Shewanella frigidimarina NCIMB 400	Sfri_0052	-125	4.2	TTTCGGGATCTAGTTCAAAGTT
Shewanella amazonensis SB2B	Sama_3618	-113	4	TTTGATGATCCACTTCAAACTT
Shewanella loihica PV-4	Shew_0054	-127	4.1	TTTGATGATCCAGTTCAAACTA
Shewanella pealeana ATCC 700345	Spea_4142	-123	4.2	ATAGTTGATCTAGTTCAAACTA
Shewanella halifaxensis HAW-EB4	Shal_0100	-124	4.2	ATAGTTGATCTAGTTCAAACTA
Shewanella piezotolerans WP3	swp_5034	-148	4	TTATGAGATTTCAATTACCTTT
		-87	3.8	AAGTTAGCTGCAGATCACACTT
Shewanella sediminis HAW-EB3	Ssed_4426	-217	4.1	ATGCGTGATCTCTCTCATTTAA
		-123	3.9	ATTGATGATCCAGCTCAAGTTA
Shewanella woodyi ATCC 51908	Swoo_4818	-148	4.2	TTTGATGATCTAGCTCAAAAAA

Position: -164 Score: 4.2 Sequence: AAGTATGACCCGCTTAACAAAA Locus tag: Shal_0116
	Shal_0116	-164	4.2	AAGTATGACCCGCTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4520
Ortholog function: Oxygen-independent coproporphyrinogen III oxidase, putative
Shewanella oneidensis MR-1	SO4520	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella putrefaciens CN-32	Sputcn32_3506	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella sp W3-18-1	Sputw3181_0400	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella sp ANA-3	Shewana3_3926	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella sp MR-4	Shewmr4_3730	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella sp MR-7	Shewmr7_3801	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella baltica OS155	Sbal_0219	-172	4.4	AAACATGATCTGCTTAACAAAA
Shewanella frigidimarina NCIMB 400	Sfri_0076	-182	4.4	AAACATGATCTGCTTAACAAAT
Shewanella amazonensis SB2B	Sama_3604	-171	3.9	AAATATGCGCTGCTTAACAAAA
Shewanella loihica PV-4	Shew_0073	-182	4.1	AAACATGACATGCTTAACAATT
Shewanella pealeana ATCC 700345	Spea_4126	-164	4.4	AAGTATGATCCGCTTAACAAAA
Shewanella halifaxensis HAW-EB4	Shal_0116	-164	4.2	AAGTATGACCCGCTTAACAAAA
Shewanella piezotolerans WP3	swp_5018	-166	4.2	AAGTATGACTTACTTAACAAAA
Shewanella sediminis HAW-EB3	Ssed_4414	-203	4	AAACATGACTTGCTTAACAAAA
Shewanella woodyi ATCC 51908	Swoo_4806	-184	4	AAACATGACTCGCTTAACAAAA

Position: -180 Score: 4.2 Sequence: TTTTGTGACAGTTATCACGCCA Locus tag: Shal_0121
	Shal_0121	-180	4.2	TTTTGTGACAGTTATCACGCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfD
Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Shewanella oneidensis MR-1	SO4453	-171	4.3	ATCTGTGACAGTGCTCACCCAA
Shewanella putrefaciens CN-32	Sputcn32_0388	-171	4.2	ATCTGTGACAGTCCTCACCCAA
Shewanella sp W3-18-1	Sputw3181_0242	-171	4.2	ATCTGTGACAGTCCTCACCCAA
Shewanella sp ANA-3	Shewana3_0273	-175	4.3	ATCTGTGACAGTGCTCACCCAA
Shewanella sp MR-4	Shewmr4_0272	-175	4.3	AACTGTGACAGCGCTCACCCAA
Shewanella sp MR-7	Shewmr7_3749	-175	4.3	AACTGTGACAGCGCTCACCCAA
Shewanella baltica OS155	Sbal_0283	-170	4.4	ATCTGTGACAGTCCTCACCTAA
Shewanella denitrificans OS217	Sden_0100	-130	4.6	TTTTGTGACACAGCTCACCTCA
Shewanella frigidimarina NCIMB 400	Sfri_0081	-159	4.7	ATTTGTGACTCGACTCACGCTA
Shewanella amazonensis SB2B	Sama_3523	-157	4.3	AATTGTGACGCCGCTCACTCAG
Shewanella loihica PV-4	Shew_0086	-148	4.5	TAATGTGACACCGCTCACGAAG
Shewanella pealeana ATCC 700345	Spea_4121	-181	4.1	TTTTGTGACAGTTATCACGGCA
Shewanella halifaxensis HAW-EB4	Shal_0121	-180	4.2	TTTTGTGACAGTTATCACGCCA
Shewanella piezotolerans WP3	swp_5010	-176	4.4	TTTTGTGACACTAATCACCTCA
Shewanella sediminis HAW-EB3	Ssed_4403	-150	4.8	TTTTGTGACACCCCTCACATAC
Shewanella woodyi ATCC 51908	Swoo_4794	-135	4.7	TTTTGTGACGACACTCACATTC

Position: -222 Score: 4.3 Sequence: TGGCGTGATAACTGTCACAAAA Locus tag: Shal_0122
	Shal_0122	-222	4.3	TGGCGTGATAACTGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: molybdenum cofactor biosynthesis protein MoaA
Shewanella oneidensis MR-1	SO4452	-220	3.8	TTGGGTGAGCACTGTCACAGAT
Shewanella putrefaciens CN-32	Sputcn32_0389	-187	3.8	TTGGGTGAGGACTGTCACAGAT
Shewanella sp W3-18-1	Sputw3181_0243	-187	3.8	TTGGGTGAGGACTGTCACAGAT
Shewanella sp ANA-3	Shewana3_0274	-187	3.8	TTGGGTGAGCACTGTCACAGAT
Shewanella sp MR-4	Shewmr4_0273	-187	3.9	TTGGGTGAGCGCTGTCACAGTT
Shewanella sp MR-7	Shewmr7_3748	-187	3.9	TTGGGTGAGCGCTGTCACAGTT
Shewanella baltica OS155	Sbal_0284	-187	4	TTAGGTGAGGACTGTCACAGAT
Shewanella denitrificans OS217	Sden_0101	-186	4.3	TGAGGTGAGCTGTGTCACAAAA
Shewanella frigidimarina NCIMB 400	Sfri_0082	-186	4.5	TAGCGTGAGTCGAGTCACAAAT
Shewanella amazonensis SB2B	Sama_3524	-180	4	CTGAGTGAGCGGCGTCACAATT
Shewanella loihica PV-4	Shew_0087	-189	4.4	CTTCGTGAGCGGTGTCACATTA
Shewanella pealeana ATCC 700345	Spea_4120	-222	4.1	TGCCGTGATAACTGTCACAAAA
Shewanella halifaxensis HAW-EB4	Shal_0122	-222	4.3	TGGCGTGATAACTGTCACAAAA
Shewanella piezotolerans WP3	swp_5009	-222	4.3	TGAGGTGATTAGTGTCACAAAA
Shewanella sediminis HAW-EB3	Ssed_4402	-221	4.4	GTATGTGAGGGGTGTCACAAAA
Shewanella woodyi ATCC 51908	Swoo_4793	-222	4.3	GAATGTGAGTGTCGTCACAAAA

Position: -261 Score: 4.8 Sequence: ATGTGAGATTTGCATCACAATT Locus tag: Shal_0189
	Shal_0189	-261	4.8	ATGTGAGATTTGCATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Swoo_4104
Ortholog function: choline-glycine betaine transporter
Shewanella pealeana ATCC 700345	Spea_4071	-261	4.6	ATATGGGAGTTGTATCACATTT
Shewanella halifaxensis HAW-EB4	Shal_0189	-261	4.8	ATGTGAGATTTGCATCACAATT
Shewanella woodyi ATCC 51908	Swoo_4104	-268	4.2	TAATCAGACGTGCATCACATTT

Position: -155 Score: 3.9 Sequence: ATCTAGGATCTAGATCAAATTT Position: -105 Score: 4.2 Sequence: TATTGTAAACCACGTCGCAAAT Locus tag: Shal_0192
	Shal_0192	-155	3.9	ATCTAGGATCTAGATCAAATTT
		-105	4.2	TATTGTAAACCACGTCGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4700
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO4700	-154	4.5	AAAAGTGAGCCAGTTCTCAATT
Shewanella putrefaciens CN-32	Sputcn32_0086	-153	4.5	AAAAGTGAACTAGTTCTCAATT
Shewanella sp W3-18-1	Sputw3181_3979	-153	4.5	AAAAGTGAACTAGTTCTCAATT
Shewanella sp ANA-3	Shewana3_4052	-154	4.3	AAAAGCGAACCAGTTCACAATT
Shewanella sp MR-4	Shewmr4_3843	-95	4.4	AAAAGCGACTCAGTTCACAATT
Shewanella sp MR-7	Shewmr7_3936	-95	4.4	AAAAGCGACTCAGTTCACAATT
Shewanella baltica OS155	Sbal_0123	-154	4.6	AAAAGTGAACTCGTTCGCATTT
Shewanella frigidimarina NCIMB 400	Sfri_3875	-148	4	TAGAGTGACTAAGATCCCAATT
Shewanella loihica PV-4	Shew_3658	-101	3.6	TATTGCCAAGCGGATCGCAAAT
Shewanella halifaxensis HAW-EB4	Shal_0192	-105	4.2	TATTGTAAACCACGTCGCAAAT
Shewanella piezotolerans WP3	swp_4927	-104	3.7	TATTGCAAAGCGCCTCGCAAAT
Shewanella sediminis HAW-EB3	Ssed_0144	-115	4.2	TATTGAGAATTACTTCTCAAAT
Shewanella woodyi ATCC 51908	Swoo_0123	-153	4.3	TACTTTGACCCAGCTCAAAAAA
		-78	3.9	AAGCGTTATCATTTACACATTA

Position: -192 Score: 4.4 Sequence: ATTTGCGACGTGGTTTACAATA Position: -142 Score: 4.2 Sequence: AAATTTGATCTAGATCCTAGAT Locus tag: Shal_0193
	Shal_0193	-192	4.4	ATTTGCGACGTGGTTTACAATA
		-142	4.2	AAATTTGATCTAGATCCTAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: prlC
Ortholog function: Oligopeptidase A (EC 3.4.24.70)
Shewanella oneidensis MR-1	SO4699	-136	4.2	AATTGAGAACTGGCTCACTTTT
Shewanella putrefaciens CN-32	Sputcn32_0087	-178	4.3	AATTGAGAACTAGTTCACTTTT
Shewanella sp W3-18-1	Sputw3181_3978	-178	4.3	AATTGAGAACTAGTTCACTTTT
Shewanella sp ANA-3	Shewana3_4051	-136	4.6	AATTGTGAACTGGTTCGCTTTT
Shewanella sp MR-4	Shewmr4_3842	-136	4.3	AATTGTGAACTGAGTCGCTTTT
Shewanella sp MR-7	Shewmr7_3935	-136	4.3	AATTGTGAACTGAGTCGCTTTT
Shewanella baltica OS155	Sbal_0124	-136	4.3	AAATGCGAACGAGTTCACTTTT
Shewanella frigidimarina NCIMB 400	Sfri_3874	-226	4	AATTGGGATCTTAGTCACTCTA
Shewanella loihica PV-4	Shew_3657	-247	3.8	ATTTGCGATCCGCTTGGCAATA
Shewanella pealeana ATCC 700345	Spea_4065	-143	3.9	AAACTTGATTAAGATCGCGGAT
Shewanella halifaxensis HAW-EB4	Shal_0193	-192	4.4	ATTTGCGACGTGGTTTACAATA
		-142	4.2	AAATTTGATCTAGATCCTAGAT
Shewanella piezotolerans WP3	swp_4926	-311	3.7	ATTTGCGAGGCGCTTTGCAATA
		-261	3.6	AAAATTGACTTTAGTCAAAGAT
Shewanella sediminis HAW-EB3	Ssed_0145	-210	4.1	ATTTGAGAAGTAATTCTCAATA
Shewanella woodyi ATCC 51908	Swoo_0124	-172	4.2	TTTTTTGAGCTGGGTCAAAGTA

Position: -274 Score: 4.8 Sequence: AAGTGTGACACACATAACATTA Locus tag: Shal_0219
	Shal_0219	-274	4.8	AAGTGTGACACACATAACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fixA
Ortholog function: electron transfer flavoprotein, beta subunit FixA
Shewanella loihica PV-4	Shew_2677	-234	4.2	AAATGTGAAGCGTGTAACATCA
Shewanella pealeana ATCC 700345	Spea_4039	-267	5.2	TTGTGTGATCTGTATAACATTA
Shewanella halifaxensis HAW-EB4	Shal_0219	-274	4.8	AAGTGTGACACACATAACATTA
Shewanella piezotolerans WP3	swp_4939	-269	4.7	AAGTGTGACGAACATAACATTA
Shewanella sediminis HAW-EB3	Ssed_3230	-306	4.8	AAGTGTGACCCGCCTAACATTA

Position: -141 Score: 4.1 Sequence: TTTCGTGAGCTTGTTCGAAGAA Position: -81 Score: 4.3 Sequence: TATTGTGCTCACAGTTACATTT Locus tag: Shal_0228
	Shal_0228	-141	4.1	TTTCGTGAGCTTGTTCGAAGAA
		-81	4.3	TATTGTGCTCACAGTTACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_4930
Ortholog function: transcriptional regulator, LysR family
Shewanella frigidimarina NCIMB 400	Sfri_2509	-114	3.9	TATTGTGACATATAGATAATAT
Shewanella pealeana ATCC 700345	Spea_4030	-80	3.8	TATTGTGGCCATAGTTACATTT
Shewanella halifaxensis HAW-EB4	Shal_0228	-81	4.3	TATTGTGCTCACAGTTACATTT
Shewanella piezotolerans WP3	swp_4930	-80	4.3	TAATGTGCCCCAAGTTACATTT
Shewanella sediminis HAW-EB3	Ssed_3221	-77	4.4	TATTGTGCGCCTGATTACATAT

Position: -177 Score: 5 Sequence: TTTTGTTATACCAATCACATAT Locus tag: Shal_0297
	Shal_0297	-177	5	TTTTGTTATACCAATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: menD
Ortholog function: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
Shewanella putrefaciens CN-32	Sputcn32_0310	-90	4.2	ACTTGGGATTAGTTTCACATTA
Shewanella sp W3-18-1	Sputw3181_3898	-90	4.2	ACTTGGGATTAGTTTCACATTA
Shewanella sp ANA-3	Shewana3_3965	-287	3.8	AGTTAAGATACAGAGCACATTA
		-92	4.1	ACTTGAGACTGGTTTCACATTA
Shewanella sp MR-4	Shewmr4_3767	-287	3.7	AGTTAAGATACAGAACACATTA
		-92	4.1	ACTTGAGACTGGTTTCACATTA
Shewanella sp MR-7	Shewmr7_3840	-287	3.8	AGTTAAGATACAGAGCACATTA
		-92	4	ACTTGAGACTAGTTTCACATTA
Shewanella baltica OS155	Sbal_0178	-173	4	CAAATTTATCTTTATCACATTT
		-89	4.7	AGTTGAGATATGTTTCACATTA
Shewanella pealeana ATCC 700345	Spea_3971	-149	4	TTTTGCTACCCTTATCACATAC
Shewanella halifaxensis HAW-EB4	Shal_0297	-177	5	TTTTGTTATACCAATCACATAT
Shewanella piezotolerans WP3	swp_4792	-74	4.3	ATATTTGATTCATCTCATATAC
Shewanella sediminis HAW-EB3	Ssed_0226	-302	4.4	TAAAGTGATCTACAACTCAAAT

Position: -100 Score: 3.6 Sequence: ATAATTGATTTGTATCAATGTT Locus tag: Shal_0300
	Shal_0300	-100	3.6	ATAATTGATTTGTATCAATGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0312
Ortholog function: hypothetical protein
Shewanella pealeana ATCC 700345	Spea_3968	-127	3.4	TTTTATGATGAATAAAACGTTC
Shewanella halifaxensis HAW-EB4	Shal_0300	-100	3.6	ATAATTGATTTGTATCAATGTT
Shewanella sediminis HAW-EB3	Ssed_0240	-100	4.1	TTGTTTGATTTAAATCAAGGTT
Shewanella woodyi ATCC 51908	Swoo_0239	-92	4	TAACTTGATTTGAATCAATATT

Position: -195 Score: 4.3 Sequence: ATATTTGCTAGACATCACATTG Position: -141 Score: 5 Sequence: ATTCGTGATGGAAATCAAATTA Locus tag: Shal_0318
	Shal_0318	-195	4.3	ATATTTGCTAGACATCACATTG
		-141	5	ATTCGTGATGGAAATCAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pilZ
Ortholog function: type IV pilus assembly PilZ
Shewanella pealeana ATCC 700345	Spea_3949	-129	5.2	AATTGTGATGAAAATCAAATTA
Shewanella halifaxensis HAW-EB4	Shal_0318	-195	4.3	ATATTTGCTAGACATCACATTG
		-141	5	ATTCGTGATGGAAATCAAATTA
Shewanella piezotolerans WP3	swp_4772	-217	4.4	ATTCGTGCTGAAAATCAAATTT

Position: -42 Score: 5 Sequence: AAGTGTGACGCAGATCACCATT Locus tag: Shal_0348
	Shal_0348	-42	5	AAGTGTGACGCAGATCACCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3921
Ortholog function: hypothetical protein
Shewanella pealeana ATCC 700345	Spea_3921	-41	4.4	AACTGTGACAAAGATCACTATT
Shewanella halifaxensis HAW-EB4	Shal_0348	-42	5	AAGTGTGACGCAGATCACCATT
Shewanella sediminis HAW-EB3	Ssed_0288	-42	5	TCTTGTGATACAGGTCACATTA
Shewanella woodyi ATCC 51908	Swoo_3910	-48	5.2	AAGTGTGACTTAGATCACACAA

Position: -124 Score: 4.3 Sequence: AAGTTTGTCTTAGATCACATTT Locus tag: Shal_0387
	Shal_0387	-124	4.3	AAGTTTGTCTTAGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0355
Ortholog function: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella oneidensis MR-1	SO0355	-84	4.4	TTATTTGCGCTACATCACAAAA
Shewanella putrefaciens CN-32	Sputcn32_3634	-84	3.8	CTATTTGCGCAGCATCACAAAA
		-45	3.9	TAAAGTGATGGGGTAAAAATAA
Shewanella sp W3-18-1	Sputw3181_3774	-84	3.8	CTATTTGCGCAGCATCACAAAA
		-45	3.9	TAAAGTGATGGGGTAAAAATAA
Shewanella baltica OS155	Sbal_0351	-73	3.8	CTATTTGCGCGGGCTCACAAAA
Shewanella frigidimarina NCIMB 400	Sfri_0361	-51	4.3	TTGTGTTACCTAGCACACATAT
Shewanella pealeana ATCC 700345	Spea_3882	-124	4.3	AAGTTTGTCTTAGATCACATTT
Shewanella halifaxensis HAW-EB4	Shal_0387	-124	4.3	AAGTTTGTCTTAGATCACATTT
Shewanella piezotolerans WP3	swp_0315	-127	3.9	AAAGTTGTCATAGATCACATTT
Shewanella sediminis HAW-EB3	Ssed_0331	-110	3.9	GAATTTGTCATAGATCACATTT

Position: -114 Score: 3.8 Sequence: TTTTGTGCTGTTTTTTATAAAG Locus tag: Shal_0442
	Shal_0442	-114	3.8	TTTTGTGCTGTTTTTTATAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4232
Ortholog function: long-chain fatty acid transport protein
Shewanella oneidensis MR-1	SO4232	-202	4.4	AAAAGTGATTTTCGTCACTAAA
Shewanella putrefaciens CN-32	Sputcn32_0475	-195	4.6	AAAAGTGATTTTTATCACTAAA
Shewanella sp W3-18-1	Sputw3181_0378	-195	4.6	AAAAGTGATTTTTATCACTAAA
Shewanella sp ANA-3	Shewana3_3757	-201	4.6	AAAAGTGATTTATCTCACTAAA
Shewanella sp MR-4	Shewmr4_3584	-201	4.6	AAAAGTGATTTATCTCACTAAA
Shewanella sp MR-7	Shewmr7_0372	-201	4.6	AAAAGTGATTTATCTCACTAAA
Shewanella baltica OS155	Sbal_0390	-207	4.3	AATGGTGATATTGGTCACTAAA
Shewanella frigidimarina NCIMB 400	Sfri_3816	-169	4.9	AAGTTTGATCATGATCACAATT
Shewanella pealeana ATCC 700345	Spea_3824	-164	3.8	AAGTGTGATCTACTCTGTATTT
Shewanella halifaxensis HAW-EB4	Shal_0442	-114	3.8	TTTTGTGCTGTTTTTTATAAAG

Position: -130 Score: 4.6 Sequence: GATTGTGATCCGTATCAAACAA Locus tag: Shal_0478
	Shal_0478	-130	4.6	GATTGTGATCCGTATCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Shewanella oneidensis MR-1	SO0426	-113	4.7	TATTGTGATCAGTATCAAACAC
Shewanella putrefaciens CN-32	Sputcn32_3415	-111	4.7	TATTGTGATCAGTATCAAACAC
Shewanella sp W3-18-1	Sputw3181_0528	-111	4.7	TATTGTGATCAGTATCAAACAC
Shewanella sp ANA-3	Shewana3_0428	-113	4.7	TATTGTGATCAGTATCAAACAC
Shewanella sp MR-4	Shewmr4_0430	-113	4.7	TATTGTGATCAGTATCAAACAC
Shewanella sp MR-7	Shewmr7_3597	-113	4.7	TATTGTGATCAGTATCAAACAC
Shewanella baltica OS155	Sbal_3911	-111	4.7	TATTGTGATCAGTATCAAACAC
Shewanella frigidimarina NCIMB 400	Sfri_3775	-168	5.1	TATTGTGATCGGTTTCAAACAA
Shewanella pealeana ATCC 700345	Spea_0421	-128	4.5	GATTGTGATCAGCATCAAACAA
Shewanella halifaxensis HAW-EB4	Shal_0478	-130	4.6	GATTGTGATCCGTATCAAACAA
Shewanella piezotolerans WP3	swp_4749	-113	4.5	GATTGTGATCAGTATCAAACAA

Position: -286 Score: 4.5 Sequence: AAGTATGAATCCGATCACATTT Locus tag: Shal_0481
	Shal_0481	-286	4.5	AAGTATGAATCCGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yniC
Ortholog function: 2-deoxyglucose-6-phosphate hydrolase YniC
Shewanella oneidensis MR-1	SO0431	-302	3.9	AAGTATGAATCAGGTCACACTC
		-118	3.8	TAACGAAATGCTTTTCACAGTA
Shewanella putrefaciens CN-32	Sputcn32_3410	-316	3.9	AAGTATGAATCAGGTCACACTC
Shewanella sp W3-18-1	Sputw3181_0533	-316	3.9	AAGTATGAATCAGGTCACACTC
Shewanella sp ANA-3	Shewana3_0432	-315	3.9	AAGTATGAATCAGGTCACACTC
Shewanella sp MR-4	Shewmr4_0436	-315	3.9	AAGTATGAATCAGGTCACACTC
Shewanella sp MR-7	Shewmr7_3593	-315	3.9	AAGTATGAATCAGGTCACACTC
Shewanella baltica OS155	Sbal_3906	-315	3.9	AAGTATGAATCAGGTCACACTC
Shewanella denitrificans OS217	Sden_3378	-316	4	AAGTATGAATCGGCTCACACTG
Shewanella frigidimarina NCIMB 400	Sfri_3772	-288	4.3	AAGTATGAATCAGCTCACACTA
Shewanella amazonensis SB2B	Sama_0381	-255	4	AAGTATGAATCAGCTCACACTC
Shewanella loihica PV-4	Shew_3425	-295	4.1	AAGTATGAATCAGATCACACTC
Shewanella pealeana ATCC 700345	Spea_0424	-286	4.3	AAGTATGAATCCGATCACACTT
		-178	4.1	AAACTTGATCTAAATTATATAA
Shewanella halifaxensis HAW-EB4	Shal_0481	-286	4.5	AAGTATGAATCCGATCACATTT
		-178	3.7	AACCTTGATCTAAATTATATAA
Shewanella piezotolerans WP3	swp_4741	-283	4.4	AAGTATGAATCAGATCACACTT
		-177	3.7	AACACTGAGATTAATCACATAA
		-101	3.7	TTTCGTAAAGCTAAACACAATA
Shewanella sediminis HAW-EB3	Ssed_0437	-296	4.2	AAGTTTGAATCAGATCACACTC
Shewanella woodyi ATCC 51908	Swoo_0284	-296	4.2	AAGTTTGAATCAGATCACACTC

Position: -139 Score: 5 Sequence: AAATGTGATCGGATTCATACTT Locus tag: Shal_0482
	Shal_0482	-139	5	AAATGTGATCGGATTCATACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Shewanella oneidensis MR-1	SO0432	-141	4.1	GAGTGTGACCTGATTCATACTT
Shewanella putrefaciens CN-32	Sputcn32_3409	-141	4.1	GAGTGTGACCTGATTCATACTT
Shewanella sp W3-18-1	Sputw3181_0534	-141	4.1	GAGTGTGACCTGATTCATACTT
Shewanella sp ANA-3	Shewana3_0433	-66	4.1	GAGTGTGACCTGATTCATACTT
Shewanella sp MR-4	Shewmr4_0437	-66	4.1	GAGTGTGACCTGATTCATACTT
Shewanella sp MR-7	Shewmr7_3592	-66	4.1	GAGTGTGACCTGATTCATACTT
Shewanella baltica OS155	Sbal_3905	-66	4.1	GAGTGTGACCTGATTCATACTT
Shewanella denitrificans OS217	Sden_3377	-139	4.1	CAGTGTGAGCCGATTCATACTT
		-67	3.9	AATTGTTAGCCTTATCACTATG
Shewanella frigidimarina NCIMB 400	Sfri_3771	-139	4.6	TAGTGTGAGCTGATTCATACTT
Shewanella amazonensis SB2B	Sama_0382	-138	4	GAGTGTGAGCTGATTCATACTT
Shewanella loihica PV-4	Shew_3424	-140	4.3	GAGTGTGATCTGATTCATACTT
Shewanella pealeana ATCC 700345	Spea_0425	-268	4	TTATATAATTTAGATCAAGTTT
		-160	4.8	AAGTGTGATCGGATTCATACTT
Shewanella halifaxensis HAW-EB4	Shal_0482	-247	3.7	TTATATAATTTAGATCAAGGTT
		-139	5	AAATGTGATCGGATTCATACTT
Shewanella piezotolerans WP3	swp_4740	-245	3.9	TTATGTGATTAATCTCAGTGTT
		-139	4.9	AAGTGTGATCTGATTCATACTT
Shewanella sediminis HAW-EB3	Ssed_0438	-141	4.4	GAGTGTGATCTGATTCAAACTT
Shewanella woodyi ATCC 51908	Swoo_0285	-139	4.4	GAGTGTGATCTGATTCAAACTT

Position: -138 Score: 4.7 Sequence: TTTTGTGACATAGGTAACACAA Locus tag: Shal_0486
	Shal_0486	-138	4.7	TTTTGTGACATAGGTAACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0439
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO0439	-34	4.4	ATACGTGATCTGACGCACATCA
Shewanella putrefaciens CN-32	Sputcn32_3403	-90	4.5	AAATGTGAACCAGAGCACACTC
Shewanella sp W3-18-1	Sputw3181_0540	-90	4.5	AAATGTGAACCAGAGCACACTC
Shewanella sp ANA-3	Shewana3_0438	-78	4.2	AAGCGTGAGCTAACGCACACAA
Shewanella sp MR-4	Shewmr4_0442	-77	3.8	AAGCGTGAACTTAAGCACACTC
Shewanella sp MR-7	Shewmr7_3587	-77	3.8	AAGCGTGAACTTAAGCACACTC
Shewanella baltica OS155	Sbal_0417	-93	4.8	AAATGTGACCTAAAGCACATAC
Shewanella frigidimarina NCIMB 400	Sfri_0491	-135	5.2	TTTTATGATTTAGATCACAAAA
Shewanella pealeana ATCC 700345	Spea_0430	-137	4.8	TTTTGTGATCTAAGTAGCAAAA
Shewanella halifaxensis HAW-EB4	Shal_0486	-138	4.7	TTTTGTGACATAGGTAACACAA
Shewanella sediminis HAW-EB3	Ssed_3193	-105	4.3	ATTTGTGACCAAGTTCCCAAAC
Shewanella woodyi ATCC 51908	Swoo_0294	-78	3.9	AAACAGGACGTAGATCACACTT

Position: -50 Score: 3.6 Sequence: ATGTTTGATGCCGTTCAAGGAC Locus tag: Shal_0487
	Shal_0487	-50	3.6	ATGTTTGATGCCGTTCAAGGAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: purD
Ortholog function: Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
Shewanella oneidensis MR-1	SO0441	-180	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella putrefaciens CN-32	Sputcn32_3402	-193	4	TATTGTGAAATCACGCAGAAAA
Shewanella sp W3-18-1	Sputw3181_0541	-193	4	TATTGTGAAATCACGCAGAAAA
Shewanella sp ANA-3	Shewana3_0440	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-4	Shewmr4_0444	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-7	Shewmr7_3585	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella baltica OS155	Sbal_0419	-195	4	TATTGTGAAATCACGCAGAAAA
Shewanella frigidimarina NCIMB 400	Sfri_0492	-195	3.9	TATTGTGAAATCACACAGAAAA
Shewanella amazonensis SB2B	Sama_0394	-194	4	TATTGTGAAATCACGCAGAAAA
Shewanella loihica PV-4	Shew_3413	-182	4	TATTGTGAAATCGCACAGAAAA
Shewanella pealeana ATCC 700345	Spea_0431	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella halifaxensis HAW-EB4	Shal_0487	-182	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella piezotolerans WP3	swp_4725	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella sediminis HAW-EB3	Ssed_0443	-282	4	GAGTGTGACGCTCTGCACAAAT
		-191	4.2	TATTGTGAAATCGTGCAGAAAA
Shewanella woodyi ATCC 51908	Swoo_0295	-192	3.6	TATTGTGAAATCACATATAAAT

Position: -182 Score: 4.1 Sequence: TATTGTGAAATCGCGCAGAAAA Locus tag: Shal_0488
	Shal_0488	-182	4.1	TATTGTGAAATCGCGCAGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purH
Ortholog function: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Shewanella oneidensis MR-1	SO0442	-180	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella putrefaciens CN-32	Sputcn32_3401	-193	4	TATTGTGAAATCACGCAGAAAA
Shewanella sp W3-18-1	Sputw3181_0542	-193	4	TATTGTGAAATCACGCAGAAAA
Shewanella sp ANA-3	Shewana3_0441	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-4	Shewmr4_0445	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-7	Shewmr7_3584	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella baltica OS155	Sbal_0420	-195	4	TATTGTGAAATCACGCAGAAAA
Shewanella frigidimarina NCIMB 400	Sfri_0493	-195	3.9	TATTGTGAAATCACACAGAAAA
Shewanella amazonensis SB2B	Sama_0395	-194	4	TATTGTGAAATCACGCAGAAAA
Shewanella loihica PV-4	Shew_3412	-182	4	TATTGTGAAATCGCACAGAAAA
Shewanella pealeana ATCC 700345	Spea_0432	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella halifaxensis HAW-EB4	Shal_0488	-182	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella piezotolerans WP3	swp_4724	-181	4.1	TATTGTGAAATCGCGCAGAAAA
Shewanella sediminis HAW-EB3	Ssed_0444	-282	4	GAGTGTGACGCTCTGCACAAAT
		-191	4.2	TATTGTGAAATCGTGCAGAAAA
Shewanella woodyi ATCC 51908	Swoo_0296	-192	3.6	TATTGTGAAATCACATATAAAT

Position: -137 Score: 4 Sequence: AAGCATGATCCCCTTCACGCTA Locus tag: Shal_0532
	Shal_0532	-137	4	AAGCATGATCCCCTTCACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0539
Ortholog function: mechanosensitive ion channel
Shewanella putrefaciens CN-32	Sputcn32_0539	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella putrefaciens CN-32	Sputcn32_0539	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp W3-18-1	Sputw3181_3633	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp W3-18-1	Sputw3181_3633	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp ANA-3	Shewana3_3684	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp ANA-3	Shewana3_3684	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp MR-4	Shewmr4_3509	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp MR-4	Shewmr4_3509	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp MR-7	Shewmr7_0443	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella sp MR-7	Shewmr7_0443	-94	4.3	TTACATGATACGCTTCACAATG
Shewanella baltica OS155	Sbal_3856	-95	4.5	TTACATGATACGCTTCACACAT
Shewanella baltica OS155	Sbal_3856	-95	4.5	TTACATGATACGCTTCACACAT
Shewanella loihica PV-4	Shew_3394	-144	4.1	TTGCTTGATATGCTTCACGCTA
Shewanella loihica PV-4	Shew_3394	-144	4.1	TTGCTTGATATGCTTCACGCTA
Shewanella pealeana ATCC 700345	Spea_0457	-138	4.1	AAGCTTGATCCTCTTCACGCTA
Shewanella pealeana ATCC 700345	Spea_0457	-138	4.1	AAGCTTGATCCTCTTCACGCTA
Shewanella halifaxensis HAW-EB4	Shal_0532	-137	4	AAGCATGATCCCCTTCACGCTA
Shewanella halifaxensis HAW-EB4	Shal_0532	-137	4	AAGCATGATCCCCTTCACGCTA
Shewanella sediminis HAW-EB3	Ssed_0457	-154	4.2	ATTCATGATCCACTTCACCTAG
Shewanella sediminis HAW-EB3	Ssed_0457	-154	4.2	ATTCATGATCCACTTCACCTAG
Shewanella woodyi ATCC 51908	Swoo_4512	-127	3.9	ATTCATGATCCTCTTCACGCAG
Shewanella woodyi ATCC 51908	Swoo_4512	-127	3.9	ATTCATGATCCTCTTCACGCAG

Position: -96 Score: 3.8 Sequence: TAGCGTGAAGGGGATCATGCTT Locus tag: Shal_0533
	Shal_0533	-96	3.8	TAGCGTGAAGGGGATCATGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4138
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO4138	-96	4.2	CATTGTGAAGCGTATCATGTAA
Shewanella putrefaciens CN-32	Sputcn32_0540	-97	4.2	CATTGTGAAGCGTATCATGTAA
Shewanella sp W3-18-1	Sputw3181_3632	-97	4.2	CATTGTGAAGCGTATCATGTAA
Shewanella sp ANA-3	Shewana3_3683	-96	4.2	CATTGTGAAGCGTATCATGTAA
Shewanella sp MR-4	Shewmr4_3508	-96	4.2	CATTGTGAAGCGTATCATGTAA
Shewanella sp MR-7	Shewmr7_0444	-96	4.2	CATTGTGAAGCGTATCATGTAA
Shewanella baltica OS155	Sbal_3855	-97	4.3	ATGTGTGAAGCGTATCATGTAA
Shewanella loihica PV-4	Shew_3393	-109	3.9	TAGCGTGAAGCATATCAAGCAA
Shewanella pealeana ATCC 700345	Spea_0458	-96	3.8	TAGCGTGAAGAGGATCAAGCTT
Shewanella halifaxensis HAW-EB4	Shal_0533	-96	3.8	TAGCGTGAAGGGGATCATGCTT

Position: -97 Score: 4.6 Sequence: CAATTTGATCGATATCACGTTT Locus tag: Shal_0534
	Shal_0534	-97	4.6	CAATTTGATCGATATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4134
Ortholog function: Protein of unknown function DUF465
Shewanella oneidensis MR-1	SO4134	-91	4.7	AATATTGATCCAGATCACGTTT
Shewanella putrefaciens CN-32	Sputcn32_0542	-89	4.7	AATATTGATCTAAGTCACAATT
Shewanella sp W3-18-1	Sputw3181_3630	-89	4.7	AATATTGATCTAAGTCACAATT
Shewanella sp ANA-3	Shewana3_3681	-91	4.6	AATATTGATCCATATCACGTTT
Shewanella sp MR-4	Shewmr4_3506	-205	4	AAGTGTGAGCCAGATCTAACTC
		-91	4.6	AATATTGATCCAAATCACGTTT
Shewanella sp MR-7	Shewmr7_0446	-205	4	AAGTGTGAGCCAGATCTAACTC
		-91	4.6	AATATTGATCCAAATCACGTTT
Shewanella baltica OS155	Sbal_3853	-206	3.8	AAGTGTGAACCAGATCCTAATC
		-92	5	AAGAGTGATCTAAGTCACATTT
Shewanella frigidimarina NCIMB 400	Sfri_3404	-219	4.7	TAACGTGATTTACATCAAGTTA
		-81	3.8	CATTGTTATTGGAATAACATCT
Shewanella amazonensis SB2B	Sama_0411	-89	4.5	CTTAGTGATCCGGATCACTTTT
Shewanella pealeana ATCC 700345	Spea_0459	-99	4.9	CTATTTGATCGATATCACATTT
Shewanella halifaxensis HAW-EB4	Shal_0534	-97	4.6	CAATTTGATCGATATCACGTTT
Shewanella piezotolerans WP3	swp_4703	-306	4	TAAGGTTAACCTGATCACACTT
		-88	4.8	AAACATGATCTAACTCACAAAT

Position: -92 Score: 4.6 Sequence: AAGTGTGATCAGTTTAACCTTT Locus tag: Shal_0535
	Shal_0535	-92	4.6	AAGTGTGATCAGTTTAACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Shewanella oneidensis MR-1	SO4133	-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella putrefaciens CN-32	Sputcn32_0543	-230	4.4	AAGTTAGATCTGGTTCACACTT
		-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella sp W3-18-1	Sputw3181_3629	-230	4.4	AAGTTAGATCTGGTTCACACTT
		-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella sp ANA-3	Shewana3_3680	-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-4	Shewmr4_3505	-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-7	Shewmr7_0447	-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella baltica OS155	Sbal_3852	-229	3.8	GATTAGGATCTGGTTCACACTT
		-92	4.1	TTCTGTGATCAAGTTAACCTTC
Shewanella denitrificans OS217	Sden_3074	-92	4.4	AACTGTGATGAAGTTAACCAAA
Shewanella frigidimarina NCIMB 400	Sfri_3403	-244	4.7	TAACTTGATGTAAATCACGTTA
		-92	4.8	ATATGTGATCAAGTTAACCTTA
Shewanella amazonensis SB2B	Sama_0412	-92	4.7	ATTCGTGATCCAGTTAACCTTA
Shewanella loihica PV-4	Shew_3390	-92	4.6	AAGTGTGATCAGGTTAACCTTA
Shewanella pealeana ATCC 700345	Spea_0460	-92	4.7	AAGTGTGATCGGCTTAACCTTT
Shewanella halifaxensis HAW-EB4	Shal_0535	-92	4.6	AAGTGTGATCAGTTTAACCTTT
Shewanella piezotolerans WP3	swp_4702	-310	4.7	ATTTGTGAGTTAGATCATGTTT
		-92	4.6	AAGTGTGATCAGGTTAACCTTA
Shewanella sediminis HAW-EB3	Ssed_0461	-92	4.7	AAGTGTGATCGAGCTAACCTTT
Shewanella sediminis HAW-EB3	Ssed_2504	-84	3.9	CAATGTAATATGCAAAACATTT
Shewanella woodyi ATCC 51908	Swoo_4509	-272	4.9	AAATGTGATGTGGGTCAACAAA
		-92	4.7	AAGTGTGATCAAGTTAACCTTA

Position: -340 Score: 4.3 Sequence: TTTTGTGACCTCTCTAGCCTTT Locus tag: Shal_0551
	Shal_0551	-340	4.3	TTTTGTGACCTCTCTAGCCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mccA
Ortholog function: cytochrome c, putative
Shewanella pealeana ATCC 700345	Spea_0479	-341	4.2	TTTTGTGACCTCTCTATCCTTT
Shewanella halifaxensis HAW-EB4	Shal_0551	-340	4.3	TTTTGTGACCTCTCTAGCCTTT
Shewanella sediminis HAW-EB3	Ssed_0482	-331	4.3	TTTTGTGACCCCGTTAGCCTTT
Shewanella woodyi ATCC 51908	Swoo_4477	-342	4.2	TTTTGTGACCTCTCTATCCTTT
		-87	3.9	AATTGTTAAGTTGTTCAGCTAA

Position: -262 Score: 3.9 Sequence: AGTTGTGATTTTTATATCTAAA Position: -159 Score: 4.1 Sequence: AAGTGTGCTGTAGCGCAGATTT Locus tag: Shal_0567
	Shal_0567	-262	3.9	AGTTGTGATTTTTATATCTAAA
		-159	4.1	AAGTGTGCTGTAGCGCAGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mccA
Ortholog function: cytochrome c, putative
Shewanella pealeana ATCC 700345	Spea_0503	-286	3.9	TTTTGCGATTTAAAAAACGTAA
		-264	3.9	AGTTGTGATTTTTATATCTAAA
Shewanella halifaxensis HAW-EB4	Shal_0567	-284	3.8	TTTTGCGATTCAAAAAACGTTA
		-262	3.9	AGTTGTGATTTTTATATCTAAA
		-159	4.1	AAGTGTGCTGTAGCGCAGATTT
Shewanella piezotolerans WP3	swp_4657	-246	4.1	TTATGTGCTCTAGCGCATGTTT
Shewanella sediminis HAW-EB3	Ssed_0493	-324	4	TATTGTGACCCACTCAAGATTT
		-233	3.7	TTTTTTGAAATGTTTAACCTAC
		-158	4.2	AAGTGTGCTTTGAAGCAAATTT
Shewanella woodyi ATCC 51908	Swoo_4456	-160	4	AAGTGTGCTTTAGCGCAGATTT

Position: -289 Score: 3.8 Sequence: AAGTGTGATCTAGATCTGTTAC Position: -134 Score: 3.7 Sequence: GAATATGATCAAGCTCAACAAT Locus tag: Shal_0616
	Shal_0616	-289	3.8	AAGTGTGATCTAGATCTGTTAC
		-134	3.7	GAATATGATCAAGCTCAACAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4142
Ortholog function: cytochrome c family protein
Shewanella oneidensis MR-1	SO4142	-121	3.9	GAAAGTGACACACCTCAAATAA
Shewanella sp ANA-3	Shewana3_3688	-118	4.2	GAAAGTGATACACCTCAAATAA
Shewanella sp MR-4	Shewmr4_3511	-118	4.2	GAAAGTGATACACCTCAAATAA
Shewanella sp MR-7	Shewmr7_0441	-122	4	GAAGGTGATACACCTCAAATAA
Shewanella frigidimarina NCIMB 400	Sfri_3554	-112	4	GGATATGATCTACTTCAAATTA
Shewanella amazonensis SB2B	Sama_3178	-268	3.9	AAACGTCACATAGATCACACAC
Shewanella loihica PV-4	Shew_0516	-113	4.1	GAAGGTGATCAACATCAAATTT
Shewanella halifaxensis HAW-EB4	Shal_0616	-289	3.8	AAGTGTGATCTAGATCTGTTAC
Shewanella piezotolerans WP3	swp_4577	-133	4	GAAAGTGATCGAGCTCAACTAT
Shewanella sediminis HAW-EB3	Ssed_4058	-112	4.7	AAAGGTGATCAACATCAAATTT

Position: -150 Score: 4.4 Sequence: AAACATGATCTAGTCCACAATT Locus tag: Shal_0676
	Shal_0676	-150	4.4	AAACATGATCTAGTCCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp35
Ortholog function: outer membrane porin
Shewanella oneidensis MR-1	SO3896	-67	4.1	AAATGTGTTAAACCACACAAAA
Shewanella sp ANA-3	Shewana3_0733	-67	4.1	AAATGTGTTAAACCACACAAAA
Shewanella sp MR-4	Shewmr4_3228	-67	3.7	AAATGTGTAAAACCACACAAAA
Shewanella sp MR-7	Shewmr7_0761	-67	3.7	AAATGTGTAAAACCACACAAAA
Shewanella baltica OS155	Sbal_3570	-67	3.6	AAATGCGTTAAACCACACAAAA
Shewanella frigidimarina NCIMB 400	Sfri_0503	-145	4.5	TTATTTGATCTAGGCCACACTA
Shewanella loihica PV-4	Shew_3260	-150	4.1	AAATTTGATCTGCGCCACACTC
Shewanella pealeana ATCC 700345	Spea_0589	-150	4.4	AAACATGATCTAGTCCACAATT
Shewanella halifaxensis HAW-EB4	Shal_0676	-150	4.4	AAACATGATCTAGTCCACAATT
Shewanella piezotolerans WP3	swp_4514	-150	4.1	AAACTTGATCTAGCCCACAATC
Shewanella sediminis HAW-EB3	Ssed_4009	-151	4.4	AAACATGATCTAGTCCACAATT
Shewanella woodyi ATCC 51908	Swoo_4152	-241	3.3	AATTATTAACTCTTTCTTAAAT
Shewanella woodyi ATCC 51908	Swoo_4151	-149	4.3	AAGTTTGATCTAGTCCACAATC

Position: -253 Score: 4.8 Sequence: GTTTGTGATGTCTATCACGTTT Locus tag: Shal_0678
	Shal_0678	-253	4.8	GTTTGTGATGTCTATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3895
Ortholog function: HesA/MoeB/ThiF family protein related to EC-YgdL
Shewanella putrefaciens CN-32	Sputcn32_0780	-317	4.9	AAATGCGATATAGATCACAAAC
Shewanella sp W3-18-1	Sputw3181_3395	-317	4.9	AAATGCGATATAGATCACAAAC
Shewanella sp ANA-3	Shewana3_0735	-308	4.5	AAATGTGATCTTGATCACTTGA
Shewanella sp MR-4	Shewmr4_3226	-309	3.9	AAATGTGATCTGGATCATTGGA
Shewanella sp MR-7	Shewmr7_0763	-309	3.9	AAATGTGATCTGGATCATTGGA
Shewanella baltica OS155	Sbal_3568	-321	5	AAGTGTGATCTGGATCAAGTTT
Shewanella frigidimarina NCIMB 400	Sfri_0504	-251	4	TATCTTGATGAGTTTAACCAAT
Shewanella amazonensis SB2B	Sama_0546	-214	4.8	AAGTGTGATCACTATCACATCA
Shewanella loihica PV-4	Shew_3251	-226	4.6	AGGTGTGATCCGTGTCGCAAAT
		-196	3.8	TTACGTGAGTTTTATCATGTTG
Shewanella pealeana ATCC 700345	Spea_0591	-259	4.3	ATGTGTGACGCTTGTCACGGTT
Shewanella halifaxensis HAW-EB4	Shal_0678	-253	4.8	GTTTGTGATGTCTATCACGTTT
Shewanella piezotolerans WP3	swp_4512	-245	3.8	CGATGTGATCTTGATCTGGTTT
		-215	3.9	ATGTGTGATATTAATCATAGGT
Shewanella sediminis HAW-EB3	Ssed_4007	-324	5	TTTTGTGATTCTTATCACGCAT
		-294	4.6	TTGTGTGATATCAATCATCTTT
		-200	3.8	TTTTGTGAACTTGATTAACAAG
Shewanella woodyi ATCC 51908	Swoo_4150	-290	5.1	CTTTGTGATATCAATCACAATA

Position: -79 Score: 3.9 Sequence: GTTTTTGACTAAGATCAAAAAA Locus tag: Shal_0680
	Shal_0680	-79	3.9	GTTTTTGACTAAGATCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0777
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32	Sputcn32_0777	-140	4.5	AAACTTGATTCGTGTCACACAA
Shewanella sp W3-18-1	Sputw3181_3398	-140	4.5	AAACTTGATTCGTGTCACACAA
Shewanella sp ANA-3	Shewana3_0738	-140	4.4	AAATTTGAACCACATCACACAG
Shewanella frigidimarina NCIMB 400	Sfri_0507	-129	4.2	TTTTGTGAGCTAATTGGCAATT
Shewanella amazonensis SB2B	Sama_0549	-139	4.3	AAAGTTGATTCACATCAAATTA
Shewanella halifaxensis HAW-EB4	Shal_0680	-79	3.9	GTTTTTGACTAAGATCAAAAAA
Shewanella piezotolerans WP3	swp_4510	-64	4.1	AAACGTGATCAACAGCATCTTT
Shewanella woodyi ATCC 51908	Swoo_4146	-81	3.9	TTTATTGATCGAGATCAGCTTA

Position: -287 Score: 4.4 Sequence: TATTGTGACAAGACTCAACTTA Locus tag: Shal_0693
	Shal_0693	-287	4.4	TATTGTGACAAGACTCAACTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_1188
Ortholog function: iron-sulfur cluster-binding protein
Shewanella putrefaciens CN-32	Sputcn32_1188	-111	4.4	AAATGTGACGCAGGTTAAAAAT
Shewanella sp W3-18-1	Sputw3181_2976	-111	4.4	AAATGTGACGCAGGTTAAAAAT
Shewanella halifaxensis HAW-EB4	Shal_0693	-287	4.4	TATTGTGACAAGACTCAACTTA
		-110	4	AATTGTGACCACAATCAATTTG

Position: -174 Score: 4.2 Sequence: ATCTGTGAATCAGATCACCATG Locus tag: Shal_0716
	Shal_0716	-174	4.2	ATCTGTGAATCAGATCACCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD
Ortholog function: periplasmic nitrate reductase component NapD
Shewanella oneidensis MR-1	SO0849	-260	3.9	TAATGTGATTGGTATAAACCTC
		-150	3.9	AACTTTGATCCCGATCGACTAT
Shewanella putrefaciens CN-32	Sputcn32_3147	-147	3.9	AACTTTGATCCCGATCGACTAT
Shewanella sp W3-18-1	Sputw3181_0796	-147	3.9	AACTTTGATCCCGATCGACTAT
Shewanella sp ANA-3	Shewana3_3429	-149	3.9	AACTTTGATCCCGATCGACTAT
Shewanella sp MR-4	Shewmr4_0705	-149	3.9	AACTTTGATCCCGATCGACTAT
Shewanella sp MR-7	Shewmr7_3317	-149	3.9	AACTTTGATCCCGATCGACTAT
Shewanella baltica OS155	Sbal_3510	-150	4	AACTTTGATCCGGATCGACTAT
Shewanella loihica PV-4	Shew_3205	-154	3.8	AACTTTGATCTCGATCTACAAA
Shewanella pealeana ATCC 700345	Spea_0624	-173	4.3	ATTTGTGAACTAGATCAACACT
Shewanella halifaxensis HAW-EB4	Shal_0716	-174	4.2	ATCTGTGAATCAGATCACCATG
Shewanella sediminis HAW-EB3	Ssed_3956	-187	4.1	ATCTGAGACATAGGTCACACAT
Shewanella woodyi ATCC 51908	Swoo_4109	-179	4.4	AAATGTGAACTCCATCACGCAC
		-155	3.9	AATATTGATCTTGATCGACTAA

Position: -146 Score: 4.1 Sequence: CGATATGATTTAGATCACTTTT Position: -81 Score: 4.9 Sequence: AATAGTGATGCAGATCACACTG Locus tag: Shal_0787
	Shal_0787	-146	4.1	CGATATGATTTAGATCACTTTT
		-81	4.9	AATAGTGATGCAGATCACACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3987
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO3987	-83	3.9	TCTTGTGAGCGAGTTCACGCCT
Shewanella putrefaciens CN-32	Sputcn32_0679	-83	4	TCTTGTGAGCCAGTTCACGCCT
Shewanella sp W3-18-1	Sputw3181_3492	-83	4	TCTTGTGAGCCAGTTCACGCCT
Shewanella sp ANA-3	Shewana3_0651	-83	4	TCTTGTGAGCCAGTTCACGCCT
Shewanella sp MR-4	Shewmr4_0652	-83	4.1	TCTTGTGACCTAGTTCACGCCT
Shewanella sp MR-7	Shewmr7_3370	-83	4.1	TCTTGTGACCTAGTTCACGCCT
Shewanella baltica OS155	Sbal_0787	-277	3.7	TAAAGCGATATATGTAACAAAC
Shewanella amazonensis SB2B	Sama_0602	-307	4.1	AAATTGAATATGGATCACATTT
Shewanella loihica PV-4	Shew_0778	-147	5.1	AGATTTGATGTAAATCACATTT
		-82	4.4	TAAAGTGACCTGTCTCACACCT
Shewanella pealeana ATCC 700345	Spea_0734	-147	4.1	CGATATGATTTGGATCACTTTT
		-82	4.2	AATAGTGATATACATCACAAGG
Shewanella halifaxensis HAW-EB4	Shal_0787	-81	4.9	AATAGTGATGCAGATCACACTG
Shewanella piezotolerans WP3	swp_4346	-4	4.6	TACTGTGATCGATATCACGTCT
Shewanella sediminis HAW-EB3	Ssed_0816	-321	3.9	AAACTCAATATAGTTCACATTT
		-147	3.9	GGATATGATCTAAATCACACTG
Shewanella woodyi ATCC 51908	Swoo_3763	-82	4.3	TTGTGTGACCTGCATCACGCCA

Position: -248 Score: 3.8 Sequence: ATTTATAATGATAATCACAACT Locus tag: Shal_0790
	Shal_0790	-248	3.8	ATTTATAATGATAATCACAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: asnC
Ortholog function: regulatory protein AsnC
Shewanella sp ANA-3	Shewana3_0798	-156	4.2	AAAGGTGACGAGTATAACAAAA
Shewanella sp MR-4	Shewmr4_3140	-156	4.2	AAAGGTGACGAGTATAACAAAA
Shewanella sp MR-7	Shewmr7_0826	-156	4.2	AAAGGTGACGAGTATAACAAAA
Shewanella denitrificans OS217	Sden_3049	-175	4	TAATGTGATTGGTATAAGAACA
Shewanella pealeana ATCC 700345	Spea_0737	-161	4.3	TATCGATATCTGCCTCACATAT
		-7	3.8	ATTTATTATGGAAGTCCCATTT
Shewanella halifaxensis HAW-EB4	Shal_0790	-248	3.8	ATTTATAATGATAATCACAACT
Shewanella piezotolerans WP3	swp_4340	-322	3.9	TAATGCAATTGGTATTACAATA
Shewanella woodyi ATCC 51908	Swoo_0916	-67	3.7	TATTTTTACTTGCCTCAACTAA

Position: -36 Score: 4.3 Sequence: AAATGGGATGTAAATAACGTAA Locus tag: Shal_0814
	Shal_0814	-36	4.3	AAATGGGATGTAAATAACGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_0863
Ortholog function: Nitroreductase family protein
Shewanella halifaxensis HAW-EB4	Shal_0814	-36	4.3	AAATGGGATGTAAATAACGTAA

Position: -160 Score: 4.3 Sequence: TTAAGCGATCTAGCTCTCAATT Locus tag: Shal_0823
	Shal_0823	-160	4.3	TTAAGCGATCTAGCTCTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0919
Ortholog function: Serine transporter, putative
Shewanella baltica OS155	Sbal_0765	-280	4.1	TTTTGTGATCTAGATCCAATCC
		-139	4	ATCAGCGATCTAGATCTCAATA
Shewanella frigidimarina NCIMB 400	Sfri_0688	-146	4.1	ATAGTTGATTCAGAACACATTA
Shewanella pealeana ATCC 700345	Spea_0771	-161	4.2	TTAAGAGATCTAGCTCTCAATT
Shewanella halifaxensis HAW-EB4	Shal_0823	-160	4.3	TTAAGCGATCTAGCTCTCAATT

Position: -215 Score: 4.1 Sequence: TGTTTTGAGCGGTTGCACATAA Position: -117 Score: 4.4 Sequence: TAGTGTGCTAGACCTCACGAAA Locus tag: Shal_0849
	Shal_0849	-215	4.1	TGTTTTGAGCGGTTGCACATAA
		-117	4.4	TAGTGTGCTAGACCTCACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cadC
Ortholog function: transcriptional regulator-related protein
Shewanella oneidensis MR-1	SO0936	-117	4.6	TTTATTGATGTAATTCACAGAT
Shewanella sp ANA-3	Shewana3_3347	-118	4.6	TTTATTGATGTGTTTCACAGAT
Shewanella sp MR-4	Shewmr4_0779	-118	4.5	TTTATTGATGCATTTCACAGAT
Shewanella sp MR-7	Shewmr7_3244	-118	4.5	TTTATTGATGCATTTCACAGAT
Shewanella loihica PV-4	Shew_0757	-115	4.3	TTATGTGCTGATTGTCACGAAA
Shewanella halifaxensis HAW-EB4	Shal_0849	-117	4.4	TAGTGTGCTAGACCTCACGAAA
Shewanella piezotolerans WP3	swp_4239	-248	4.2	TAACGTGCTAAAGCTCACGAAA
Shewanella sediminis HAW-EB3	Ssed_0879	-117	4.1	TAACGTGTTCCTTGTCACGAAT
Shewanella woodyi ATCC 51908	Swoo_0881	-116	3.7	ATATGAGCGCTAAATCACGCTT

Position: -99 Score: 4.1 Sequence: TAATCTGATTGGAATAACCTAT Locus tag: Shal_0881
	Shal_0881	-99	4.1	TAATCTGATTGGAATAACCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fkpA
Ortholog function: FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)
Shewanella oneidensis MR-1	SO1065	-119	4.3	TAGAGTGAAATTAATCACAGTT
Shewanella sp ANA-3	Shewana3_0903	-120	4.4	TAGAGTGAGATTAATCACAGTT
Shewanella sp MR-4	Shewmr4_3034	-120	4.4	TAGAGTGAGATTAATCACAGTT
Shewanella sp MR-7	Shewmr7_0940	-120	4.4	TAGAGTGAGATTAATCACAGTT
Shewanella halifaxensis HAW-EB4	Shal_0881	-99	4.1	TAATCTGATTGGAATAACCTAT
Shewanella sediminis HAW-EB3	Ssed_0918	-96	3.9	CAATGTAATTGGAATAACGTAT
Shewanella woodyi ATCC 51908	Swoo_0968	-95	4.2	TAATGTAATTGGAATATCATAT

Position: -111 Score: 4.3 Sequence: GAATGTGTTGTTGCTCACACTT Locus tag: Shal_0885
	Shal_0885	-111	4.3	GAATGTGTTGTTGCTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Shewanella oneidensis MR-1	SO3981	-174	3.7	AAGTTTGCGCTAGATCAAAATG
		-151	4.5	AATAGTGTTGTTGTTCACACTT
Shewanella putrefaciens CN-32	Sputcn32_0684	-114	4.5	AATAGTGTTGTTGTTCACACTT
Shewanella sp W3-18-1	Sputw3181_3487	-114	4.5	AATAGTGTTGTTGTTCACACTT
Shewanella sp ANA-3	Shewana3_0657	-138	3.7	AAGTTTGCGCTAGATCAAAATG
		-115	4.5	AATAGTGTTGTTGTTCACACTT
Shewanella sp MR-4	Shewmr4_0658	-139	3.7	AAGTTTGCGCTAGATCAAAATG
		-116	4.5	AATAGTGTTGTTGTTCACACTT
Shewanella sp MR-7	Shewmr7_3364	-139	3.7	AAGTTTGCGCTAGATCAAAATG
		-116	4.5	AATAGTGTTGTTGTTCACACTT
Shewanella baltica OS155	Sbal_0793	-121	3.7	AAGTTTGCGCTAGATCAAAATG
		-98	4.5	AAAGGTGTTGTTGTTCACATTT
Shewanella frigidimarina NCIMB 400	Sfri_0621	-140	3.9	AAACAGGATGTATCTCACAGTT
Shewanella amazonensis SB2B	Sama_0647	-112	4	GGATGTGTTATTGTTCACACTT
Shewanella loihica PV-4	Shew_0843	-136	3.9	AAACTTGAGGCAGATCATAATG
		-113	4.4	GAATGTGTTGTTGGTCACATTT
Shewanella pealeana ATCC 700345	Spea_0830	-109	4	GAACGTGTTGTTGCTCACACTT
		-81	3.8	ATTTGTTAATGTAATCAAGTAT
Shewanella halifaxensis HAW-EB4	Shal_0885	-111	4.3	GAATGTGTTGTTGCTCACACTT
Shewanella sediminis HAW-EB3	Ssed_0930	-113	4.8	AAATGTGGTGTTGCTCACACTT
Shewanella woodyi ATCC 51908	Swoo_0971	-112	4.8	AAACGTGTTGTTGCTCACATTT

Position: -152 Score: 4.2 Sequence: AAGTGTGAGCAACAACACATTC Locus tag: Shal_0886
	Shal_0886	-152	4.2	AAGTGTGAGCAACAACACATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: cytochrome c552 precursor (EC 1.7.2.2)
Shewanella oneidensis MR-1	SO3980	-149	3.9	AAGTGTGAACAACAACACTATT
		-126	4.1	CATTTTGATCTAGCGCAAACTT
Shewanella putrefaciens CN-32	Sputcn32_0685	-149	3.9	AAGTGTGAACAACAACACTATT
		-126	4.1	CATTTTGATCTGGCGCAAACTT
Shewanella sp W3-18-1	Sputw3181_3486	-149	3.9	AAGTGTGAACAACAACACTATT
		-126	4.1	CATTTTGATCTGGCGCAAACTT
Shewanella sp ANA-3	Shewana3_0658	-131	3.9	AAGTGTGAACAACAACACTATT
		-108	4.1	CATTTTGATCTAGCGCAAACTT
Shewanella sp MR-4	Shewmr4_0659	-131	3.9	AAGTGTGAACAACAACACTATT
		-108	4.1	CATTTTGATCTAGCGCAAACTT
Shewanella sp MR-7	Shewmr7_3363	-131	3.9	AAGTGTGAACAACAACACTATT
		-108	4.1	CATTTTGATCTAGCGCAAACTT
Shewanella baltica OS155	Sbal_0794	-149	4.4	AAATGTGAACAACAACACCTTT
		-126	4.1	CATTTTGATCTAGCGCAAACTT
Shewanella loihica PV-4	Shew_0844	-156	4.5	AAATGTGACCAACAACACATTC
		-133	4.2	CATTATGATCTGCCTCAAGTTT
Shewanella pealeana ATCC 700345	Spea_0831	-183	4	ATACTTGATTACATTAACAAAT
		-155	3.8	AAGTGTGAGCAACAACACGTTC
		-71	4.1	ATAAGTGATTAAATTCAACCTT
Shewanella halifaxensis HAW-EB4	Shal_0886	-152	4.2	AAGTGTGAGCAACAACACATTC
Shewanella piezotolerans WP3	swp_3958	-150	4	AAATGTGAGCAACAACACGTTC
Shewanella sediminis HAW-EB3	Ssed_0931	-154	4.6	AAGTGTGAGCAACACCACATTT
		-131	3.9	CATTTTGATCTACCGCATACTT
Shewanella woodyi ATCC 51908	Swoo_0972	-154	4.4	AAATGTGAGCAACAACACGTTT

Position: -328 Score: 4 Sequence: TTTTGTGATTCAGATCCATCTT Locus tag: Shal_0902
	Shal_0902	-328	4	TTTTGTGATTCAGATCCATCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: arginine pathway regulatory protein ArgR, repressor of arg regulon
Shewanella oneidensis MR-1	SO0769	-266	4.5	ATGTGTGACATGGATCTAATTT
Shewanella putrefaciens CN-32	Sputcn32_3220	-259	4.2	ATGTGTGACATGGATCTAGTTT
Shewanella sp W3-18-1	Sputw3181_0721	-259	4.2	ATGTGTGACATGGATCTAGTTT
Shewanella sp ANA-3	Shewana3_3510	-266	4.5	ATGTGTGACATGGATCTAATTT
Shewanella sp MR-4	Shewmr4_3340	-266	4.5	ATGTGTGACATGGATCTAATTT
Shewanella sp MR-7	Shewmr7_0613	-266	4.5	ATGTGTGACATGGATCTAATTT
Shewanella baltica OS155	Sbal_0608	-270	4.5	ATGTGTGACATGGATCTAATTT
Shewanella amazonensis SB2B	Sama_0671	-262	4	ATTTGTGAGGTAGATCCTCAAA
Shewanella loihica PV-4	Shew_0866	-282	4.6	TTATGTGATATAGATCTAGATT
Shewanella piezotolerans WP3	swp_4101	-140	3.8	ATTTATACTCTACATCATATTT
Shewanella sediminis HAW-EB3	Ssed_0951	-254	3.8	ATTTTTGTTCTACATCAATAAA
Shewanella woodyi ATCC 51908	Swoo_1001	-311	4.5	TTTTGTGATGTAGGTCTACATT

Position: -319 Score: 3.8 Sequence: TATCATGATTATTTTCGCCATT Position: -46 Score: 3.9 Sequence: AAGATGGATCTGAATCACAAAA Locus tag: Shal_0903
	Shal_0903	-319	3.8	TATCATGATTATTTTCGCCATT
		-46	3.9	AAGATGGATCTGAATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mdh
Ortholog function: malate dehydrogenase (EC 1.1.1.37)
Shewanella oneidensis MR-1	SO0770	-47	4.3	AAATTAGATCCATGTCACACAT
Shewanella putrefaciens CN-32	Sputcn32_3219	-46	4	AAACTAGATCCATGTCACACAT
Shewanella sp W3-18-1	Sputw3181_0722	-46	4	AAACTAGATCCATGTCACACAT
Shewanella sp ANA-3	Shewana3_3509	-46	4.3	AAATTAGATCCATGTCACACAT
Shewanella sp MR-4	Shewmr4_3339	-46	4.3	AAATTAGATCCATGTCACACAT
Shewanella sp MR-7	Shewmr7_0614	-46	4.3	AAATTAGATCCATGTCACACAT
Shewanella baltica OS155	Sbal_0609	-46	4.3	AAATTAGATCCATGTCACACAT
Shewanella frigidimarina NCIMB 400	Sfri_3173	-45	4.2	AATTTAGATCTATGTCACAAAC
Shewanella amazonensis SB2B	Sama_0672	-46	3.8	TTTGAGGATCTACCTCACAAAT
Shewanella loihica PV-4	Shew_0867	-47	4.5	AATCTAGATCTATATCACATAA
Shewanella halifaxensis HAW-EB4	Shal_0903	-46	3.9	AAGATGGATCTGAATCACAAAA
Shewanella piezotolerans WP3	swp_4100	-46	3.9	AAAACAGATCTAAATCACAAAA
Shewanella sediminis HAW-EB3	Ssed_0952	-136	4.1	TTTATTGATGTAGAACAAAAAT
Shewanella woodyi ATCC 51908	Swoo_1002	-47	3.8	AATGTAGACCTACATCACAAAA

Position: -169 Score: 4.5 Sequence: AGTAGTGATCTCGTGCACACAT Locus tag: Shal_0924
	Shal_0924	-169	4.5	AGTAGTGATCTCGTGCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purT
Ortholog function: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
Shewanella oneidensis MR-1	SO3613	-161	3.8	TAGCTTGATCAAAAACACAGTT
Shewanella putrefaciens CN-32	Sputcn32_1001	-119	3.8	TAGCTTGATCAAAAACACAGTT
Shewanella sp W3-18-1	Sputw3181_3164	-119	3.8	TAGCTTGATCAAAAACACAGTT
Shewanella sp ANA-3	Shewana3_3197	-121	3.9	TAGCTTGATCGAAAACACAGTT
Shewanella sp MR-4	Shewmr4_3020	-121	3.9	TAGCTTGATCGAAAACACAGTT
Shewanella sp MR-7	Shewmr7_3101	-121	3.9	TAGCTTGATCGAAAACACAGTT
Shewanella pealeana ATCC 700345	Spea_0871	-176	4.4	AAGAGTGATCTCGCCCACACTT
Shewanella halifaxensis HAW-EB4	Shal_0924	-169	4.5	AGTAGTGATCTCGTGCACACAT
Shewanella piezotolerans WP3	swp_4077	-147	4.1	CAGCGTGATCTGCCGCACGTTT
Shewanella sediminis HAW-EB3	Ssed_0973	-160	4.6	TAAAGTGATCCACTACACACTT

Position: -163 Score: 4.3 Sequence: ATCTGTGAACCTTGTCGCATTT Locus tag: Shal_1059
	Shal_1059	-163	4.3	ATCTGTGAACCTTGTCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sbal_1323
Ortholog function: HTH-type transcriptional regulator BetI
Shewanella frigidimarina NCIMB 400	Sfri_1948	-111	4.9	TGTTGTGATCTATATCAAGTTA
Shewanella pealeana ATCC 700345	Spea_1009	-164	4.1	ATGCGTGAGGTGAGTCACGCTT
		-135	3.7	AAGCTTGATCGTTATAACCCTA
Shewanella halifaxensis HAW-EB4	Shal_1059	-163	4.3	ATCTGTGAACCTTGTCGCATTT
Shewanella piezotolerans WP3	swp_3809	-141	4.7	TTCTGTGATTCAGGTCGCAAAT
Shewanella sediminis HAW-EB3	Ssed_1121	-140	4.3	ATCTGTGATGCAAGTCGCAATC

Position: -210 Score: 4 Sequence: TAAAGTGATTTTTCTTGCAGAT Position: -78 Score: 3.8 Sequence: TTATTTGAGCTAGCGCTAATTA Locus tag: Shal_1062
	Shal_1062	-210	4	TAAAGTGATTTTTCTTGCAGAT
		-78	3.8	TTATTTGAGCTAGCGCTAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1326
Ortholog function: COG1242: Predicted Fe-S oxidoreductase
Shewanella oneidensis MR-1	SO1326	-294	4.3	AATAGTGATTTTTATTGCAAAT
Shewanella putrefaciens CN-32	Sputcn32_1137	-293	4.3	AATAGTGATTTTTATTGCAAAT
		-224	4.6	ATTTGTGAGGTAGATCGCTAAA
Shewanella sp W3-18-1	Sputw3181_3027	-293	4.3	AATAGTGATTTTTATTGCAAAT
		-224	4.3	GTTTGTGATGTAGATCGCTAAA
Shewanella sp ANA-3	Shewana3_3048	-294	4.3	AATAGTGATTTTTATTGCAAAT
Shewanella sp MR-4	Shewmr4_2870	-55	4.3	AATAGTGATTTTTATTGCAAAT
Shewanella sp MR-7	Shewmr7_2952	-55	4.3	AATAGTGATTTTTATTGCAAAT
Shewanella baltica OS155	Sbal_1179	-293	3.9	AATAGTGATTTTTATTGCAAAC
		-225	4.2	TGATGTGAGCAATATCTCAATG
		-193	4.3	TAATTTGAGGATGCGCACATTT
Shewanella frigidimarina NCIMB 400	Sfri_2950	-128	3.9	TTTTTTGAGTTTGTGCACAACT
Shewanella loihica PV-4	Shew_1033	-148	4.4	AAAAGTGATTTTTATTGCATAT
		-127	4	TACAGTGAATTATTTAACAAAT
Shewanella pealeana ATCC 700345	Spea_1014	-303	3.9	TAAATTGACCTGTATAACCTTA
		-201	4	TAAAGTGATTTTTTTTGCAGAT
Shewanella halifaxensis HAW-EB4	Shal_1062	-210	4	TAAAGTGATTTTTCTTGCAGAT
Shewanella piezotolerans WP3	swp_3802	-111	3.8	TTATTTGAGCTAGCGCTAATAA
Shewanella woodyi ATCC 51908	Swoo_1222	-229	3.8	AAATATGAGTTCTATTGCAAAT

Position: -89 Score: 4.6 Sequence: ATTTTTGATTCAGTTCACAGTC Locus tag: Shal_1064
	Shal_1064	-89	4.6	ATTTTTGATTCAGTTCACAGTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1328
Ortholog function: transcriptional regulator, LysR family
Shewanella oneidensis MR-1	SO1328	-109	4	AAAATCGATTTTGCTCACACAA
Shewanella putrefaciens CN-32	Sputcn32_1139	-109	3.8	AATGGCGATTCTGCTCACACTC
Shewanella sp W3-18-1	Sputw3181_3025	-109	3.9	AATGGCGATTCGGCTCACACTC
Shewanella sp ANA-3	Shewana3_3046	-109	3.9	AAAATCGATTTTGCTCACAGTA
Shewanella sp MR-4	Shewmr4_2868	-109	4	AAAATCGATTTTGCTCACACTA
Shewanella sp MR-7	Shewmr7_2950	-109	4	AAAATCGATTTTGCTCACACAA
Shewanella loihica PV-4	Shew_1035	-110	3.8	TTTTGGGCAGCGCTTCACACTT
Shewanella pealeana ATCC 700345	Spea_1016	-89	4.8	ATTTTTGATTCAGTTCACAAAC
Shewanella halifaxensis HAW-EB4	Shal_1064	-89	4.6	ATTTTTGATTCAGTTCACAGTC
Shewanella woodyi ATCC 51908	Swoo_1224	-111	4.3	ATTTTAGAGATAGCTCACATTT

Position: -99 Score: 5.1 Sequence: TTATTTGACTTAGATCACAAAT Locus tag: Shal_1065
	Shal_1065	-99	5.1	TTATTTGACTTAGATCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaC
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella oneidensis MR-1	SO1329	-162	4.7	TGTATTGATCCAGATCACAAAT
Shewanella putrefaciens CN-32	Sputcn32_1140	-101	4.7	TGTATTGATCCAGATCACAAAT
Shewanella sp W3-18-1	Sputw3181_3024	-101	4.7	TGTATTGATCCAGATCACAAAT
Shewanella sp ANA-3	Shewana3_3045	-162	4.4	TGGATTGATCCAGATCACAAAT
Shewanella sp MR-4	Shewmr4_2867	-162	4.4	TGGATTGATCCAGATCACAAAT
Shewanella sp MR-7	Shewmr7_2949	-162	4.4	TGGATTGATCCAGATCACAAAT
Shewanella baltica OS155	Sbal_1182	-101	4.7	TAGATTGATCCAGATCACAAAT
Shewanella denitrificans OS217	Sden_2784	-157	4.8	TGAATTGATCTAGATCACATTT
Shewanella frigidimarina NCIMB 400	Sfri_2947	-158	4.4	TCTATTGATCTAAATCACAAAT
Shewanella amazonensis SB2B	Sama_0861	-102	4.2	TGAATTGATTCAGATCACGTTA
Shewanella loihica PV-4	Shew_1036	-162	4.6	TCATTTGACTTAGATCACAAAT
Shewanella pealeana ATCC 700345	Spea_1019	-100	4.6	TCATTTGACTTAGATCACAAAT
Shewanella halifaxensis HAW-EB4	Shal_1065	-99	5.1	TTATTTGACTTAGATCACAAAT
Shewanella piezotolerans WP3	swp_3798	-98	4.6	TCATTTGACTTAGATCACAAAT
Shewanella sediminis HAW-EB3	Ssed_1130	-103	4.3	TCATTTGACAAAGATCACAAAT
Shewanella woodyi ATCC 51908	Swoo_1225	-96	4.3	TCATTTGACTAAGATCACAAAT

Position: -96 Score: 4.3 Sequence: TAAGGTGATCTCTTTCATGTTT Locus tag: Shal_1103
	Shal_1103	-96	4.3	TAAGGTGATCTCTTTCATGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella oneidensis MR-1	SO1363	-124	4.2	TAAAGTGATCTTTCTCTAAGAT
Shewanella putrefaciens CN-32	Sputcn32_1174	-124	4.3	TAAGGTGATAACCCTCGCAAAT
Shewanella sp W3-18-1	Sputw3181_2990	-124	4.3	TAAGGTGATAACCCTCGCAAAT
Shewanella sp MR-4	Shewmr4_2832	-124	4	TAAGGTGATCTCCCTCTAAGAT
Shewanella sp MR-7	Shewmr7_2914	-124	3.6	CAAGGTGATCTCTCTCTAAGAT
Shewanella baltica OS155	Sbal_1216	-124	4.1	TAAGGTGATCGTTCTCTAATAT
Shewanella frigidimarina NCIMB 400	Sfri_3609	-125	4	GAAGGTGATGTGGCTCATAAAA
Shewanella amazonensis SB2B	Sama_0895	-113	3.6	TAAGATGATCTGCTTCAAGGAA
Shewanella loihica PV-4	Shew_1069	-125	4.5	TAATTTGATCCGCTTCATAGTT
Shewanella pealeana ATCC 700345	Spea_1055	-125	4.5	AAAAGTGATCTCTTTCATAGTT
Shewanella halifaxensis HAW-EB4	Shal_1103	-96	4.3	TAAGGTGATCTCTTTCATGTTT
Shewanella piezotolerans WP3	swp_3762	-42	4.4	TAAGGTGATCTCTTTCATAGTT
Shewanella sediminis HAW-EB3	Ssed_1165	-170	3.4	TAATGCAATTGGTATTATAATT
Shewanella woodyi ATCC 51908	Swoo_1260	-125	4.2	GAATTTGATCTGTCTCAAACTT

Position: -76 Score: 4.6 Sequence: AAACGTGATTTAGATCACGACT Locus tag: Shal_1108
	Shal_1108	-76	4.6	AAACGTGATTTAGATCACGACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiA-2
Ortholog function: Ribosome hibernation protein YfiA
Shewanella oneidensis MR-1	SO3422	-78	4.7	AAGTGTGATTTAACTCTCGTTT
Shewanella putrefaciens CN-32	Sputcn32_2740	-77	5.1	TTTTGTGATTTAGATCTCGTTT
Shewanella sp W3-18-1	Sputw3181_1272	-77	5.1	TTTTGTGATTTAGATCTCGTTT
Shewanella sp ANA-3	Shewana3_1133	-78	5.1	AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-4	Shewmr4_1132	-78	5.1	AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-7	Shewmr7_1203	-78	5.1	AAATGTGATTTAGATCTCGTTT
Shewanella baltica OS155	Sbal_1221	-77	5.2	AAATGTGATCTAGATCTCGTTT
Shewanella denitrificans OS217	Sden_2746	-77	4.8	AAGTGTGACTTTGATCACGCTT
		-38	4.1	TAATCTGAAGTTAAGCACATAA
Shewanella frigidimarina NCIMB 400	Sfri_2912	-77	5	AAGTGTGATGCAGATCACTATT
Shewanella amazonensis SB2B	Sama_0899	-78	4.3	AAACGTGATTTTACTCACGACT
Shewanella loihica PV-4	Shew_1073	-76	4.6	AAAGTTGATCTAGATCACGTTT
Shewanella pealeana ATCC 700345	Spea_1060	-76	4.6	AAACGTGATTTAGATCACGACT
Shewanella halifaxensis HAW-EB4	Shal_4284	-83	4.6	AAACATGACCTAGATCACACTA
		-58	3.8	TAATGTGATTGGACTATTGTAA
Shewanella halifaxensis HAW-EB4	Shal_1108	-76	4.6	AAACGTGATTTAGATCACGACT
Shewanella piezotolerans WP3	swp_3757	-76	4.6	AAACGTGATTTAGATCACGACT
Shewanella sediminis HAW-EB3	Ssed_1169	-222	3.8	TTTTGAGAGGCAAATAAAAAAA
		-76	4.6	AAACGTGATTTAGATCACGACT
Shewanella woodyi ATCC 51908	Swoo_1264	-76	4.5	AAACGTGATCAAGATCACGACT

Position: -255 Score: 4.9 Sequence: AGTCGTGATCTAAATCACGTTT Locus tag: Shal_1109
	Shal_1109	-255	4.9	AGTCGTGATCTAAATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3421
Ortholog function: b-type cytochrome, putative
Shewanella oneidensis MR-1	SO3421	-244	4.2	AAACGAGAGTTAAATCACACTT
Shewanella putrefaciens CN-32	Sputcn32_2739	-242	4.8	AAACGAGATCTAAATCACAAAA
Shewanella sp W3-18-1	Sputw3181_1273	-242	4.8	AAACGAGATCTAAATCACAAAA
Shewanella sp ANA-3	Shewana3_1134	-241	4.9	AAACGAGATCTAAATCACATTT
Shewanella sp MR-4	Shewmr4_1133	-241	4.9	AAACGAGATCTAAATCACATTT
Shewanella sp MR-7	Shewmr7_1204	-241	4.9	AAACGAGATCTAAATCACATTT
Shewanella baltica OS155	Sbal_1222	-244	5	AAACGAGATCTAGATCACATTT
Shewanella denitrificans OS217	Sden_2745	-291	4.7	AAGCGTGATCAAAGTCACACTT
Shewanella frigidimarina NCIMB 400	Sfri_2911	-383	5.2	AATAGTGATCTGCATCACACTT
Shewanella amazonensis SB2B	Sama_0900	-234	4.2	AGTCGTGAGTAAAATCACGTTT
Shewanella loihica PV-4	Shew_1074	-208	4.9	AAACGTGATCTAGATCAACTTT
Shewanella pealeana ATCC 700345	Spea_1061	-255	4.9	AGTCGTGATCTAAATCACGTTT
Shewanella halifaxensis HAW-EB4	Shal_1109	-255	4.9	AGTCGTGATCTAAATCACGTTT
Shewanella piezotolerans WP3	swp_3756	-366	4.9	AGTCGTGATCTAAATCACGTTT
Shewanella sediminis HAW-EB3	Ssed_1170	-236	4.9	AGTCGTGATCTAAATCACGTTT
Shewanella woodyi ATCC 51908	Swoo_1265	-234	4.9	AGTCGTGATCTTGATCACGTTT

Position: -77 Score: 3.8 Sequence: CGGTGCGATCTGTATCACTATT Locus tag: Shal_1117
	Shal_1117	-77	3.8	CGGTGCGATCTGTATCACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_3747
Ortholog function: hypothetical protein
Shewanella sp ANA-3	Shewana3_1142	-85	4.4	GGATGTGAGTTGCTTCACAATT
Shewanella sp ANA-3	Shewana3_1142	-85	4.4	GGATGTGAGTTGCTTCACAATT
Shewanella sp MR-4	Shewmr4_1141	-85	5	AGATGTGACTTGCCTCACAATT
Shewanella sp MR-4	Shewmr4_1141	-85	5	AGATGTGACTTGCCTCACAATT
Shewanella sp MR-7	Shewmr7_1212	-85	4.4	GGATGTGACTTGCCTCACAATT
Shewanella sp MR-7	Shewmr7_1212	-85	4.4	GGATGTGACTTGCCTCACAATT
Shewanella baltica OS155	Sbal_1230	-78	5.5	AAATGTGATTAAGTTCACAATT
Shewanella baltica OS155	Sbal_1230	-78	5.5	AAATGTGATTAAGTTCACAATT
Shewanella pealeana ATCC 700345	Spea_1069	-77	4.4	CTGTGCGATCTGTGTCACAATT
Shewanella pealeana ATCC 700345	Spea_1069	-77	4.4	CTGTGCGATCTGTGTCACAATT
Shewanella halifaxensis HAW-EB4	Shal_1117	-77	3.8	CGGTGCGATCTGTATCACTATT
Shewanella halifaxensis HAW-EB4	Shal_1117	-77	3.8	CGGTGCGATCTGTATCACTATT

Position: -56 Score: 4.3 Sequence: TATAGTGAGTTATATAAAATTT Locus tag: Shal_1124
	Shal_1124	-56	4.3	TATAGTGAGTTATATAAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: phk
Ortholog function: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Shewanella oneidensis MR-1	SO3542	-95	4.2	AATTTGGATGCAGAACACATTT
Shewanella putrefaciens CN-32	Sputcn32_1051	-234	4	TCATGTGATCAAGCCTACATTT
		-95	4.1	AATTTGGATGTAGGGCACATTT
Shewanella sp W3-18-1	Sputw3181_3114	-234	4	TCATGTGATCAAGCCTACATTT
		-95	4.1	AATTTGGATGTAGGGCACATTT
Shewanella sp ANA-3	Shewana3_3145	-95	4	AATTTGGATGCAGGGCACATTT
Shewanella sp MR-4	Shewmr4_2965	-95	4.3	AATTTGGATGTAGAACACATTT
Shewanella sp MR-7	Shewmr7_3047	-95	4.3	AATTTGGATGTAGAACACATTT
Shewanella baltica OS155	Sbal_1046	-235	4.4	TCATGTGATCAAGCTCGCGTTT
		-96	4.1	AATTTGGATGTAGGGCACATTT
Shewanella denitrificans OS217	Sden_2731	-233	5	CTTAGTGATCCAGTTCACATTA
		-94	3.7	AAGTTAGATCGGGGACACATTT
Shewanella frigidimarina NCIMB 400	Sfri_2898	-233	4.5	ACAAGTGATATCCATCACACTT
		-95	3.8	AAATTAGATAAAGGCCACATTA
Shewanella amazonensis SB2B	Sama_0915	-240	4.1	ACTCGTGATCAAGCTCACGGTT
		-99	4.1	AATTTGGATGTGGGGCACATTT
Shewanella loihica PV-4	Shew_1091	-238	4.6	CCATGTGATACAGATCACAGTT
		-97	4	AAATAAGATATTGAACACATTT
Shewanella pealeana ATCC 700345	Spea_1076	-235	3.9	CTGAGCGATATAGATCACAGTT
Shewanella halifaxensis HAW-EB4	Shal_1124	-56	4.3	TATAGTGAGTTATATAAAATTT
Shewanella piezotolerans WP3	swp_3738	-237	4.5	CTGAGTGATACAGATCACACAT
		-96	3.8	AAATAAGATACAGGACACATTT
Shewanella sediminis HAW-EB3	Ssed_1186	-238	4.4	CCATGTGACGCAGATCACAGTT
		-97	4.2	AAATAAGATGTAGAACACATTT
Shewanella woodyi ATCC 51908	Swoo_1282	-238	4.4	TCGCGTGATCACGATCACACTT
		-97	3.8	AAACAAGATATAGAACACATTT

Position: -105 Score: 4.4 Sequence: AAATGTTACCTAGATCCCACAA Locus tag: Shal_1244
	Shal_1244	-105	4.4	AAATGTTACCTAGATCCCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3556
Ortholog function: cyclic nucleotide phosphodiesterase, putative
Shewanella putrefaciens CN-32	Sputcn32_1039	-81	4	ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32	Sputcn32_1039	-81	4	ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1	Sputw3181_3126	-81	4	ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1	Sputw3181_3126	-81	4	ATTTGCAATCATGATCACACAG
Shewanella baltica OS155	Sbal_1034	-139	3.8	TGATATGAAATTGTTCGCAGTT
		-95	4.1	TTTCGTTATATACTTAACAGAA
Shewanella denitrificans OS217	Sden_1222	-315	3.7	AATTCTGACTCATCTTAAATTA

Position: -269 Score: 4.4 Sequence: TTGTGGGATCTAGGTAACATTT Position: 25 Score: 3.9 Sequence: TAATGGGATCTGATTCAGATCT Locus tag: Shal_1245
	Shal_1245	-269	4.4	TTGTGGGATCTAGGTAACATTT
		25	3.9	TAATGGGATCTGATTCAGATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purE
Ortholog function: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Shewanella oneidensis MR-1	SO3554	-70	3.9	TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1	SO3554	-70	3.9	TTTTGCAACTATGATCACACAA
Shewanella putrefaciens CN-32	Sputcn32_1041	-81	4	ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32	Sputcn32_1041	-81	4	ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1	Sputw3181_3124	-81	4	ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1	Sputw3181_3124	-81	4	ATTTGCAATCATGATCACACAG
Shewanella sp ANA-3	Shewana3_3155	-70	3.9	TTTTGCAACTATGATCACACAA
Shewanella sp ANA-3	Shewana3_3155	-70	3.9	TTTTGCAACTATGATCACACAA
Shewanella sp MR-4	Shewmr4_2975	-70	4.5	TTTTGTAACTATGATCACACAA
Shewanella sp MR-4	Shewmr4_2975	-70	4.5	TTTTGTAACTATGATCACACAA
Shewanella sp MR-7	Shewmr7_3057	-70	4.5	TTTTGTAACTATGATCACACAA
Shewanella sp MR-7	Shewmr7_3057	-70	4.5	TTTTGTAACTATGATCACACAA
Shewanella baltica OS155	Sbal_1036	-139	3.8	TGATATGAAATTGTTCGCAGTT
		-95	4.1	TTTCGTTATATACTTAACAGAA
Shewanella denitrificans OS217	Sden_1224	-315	3.7	AATTCTGACTCATCTTAAATTA
Shewanella amazonensis SB2B	Sama_1064	-82	4.1	AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B	Sama_1064	-82	4.1	AAATTTGCCAAAGCTCACACAT
Shewanella halifaxensis HAW-EB4	Shal_1245	-269	4.4	TTGTGGGATCTAGGTAACATTT
Shewanella halifaxensis HAW-EB4	Shal_1245	-269	4.4	TTGTGGGATCTAGGTAACATTT
Shewanella halifaxensis HAW-EB4	Shal_1245	-269	4.4	TTGTGGGATCTAGGTAACATTT
Shewanella sediminis HAW-EB3	Ssed_1333	-217	3.8	TATTGTGAAGTCATCCGGATAT
Shewanella woodyi ATCC 51908	Swoo_3321	-288	3.7	TCCAGCGACTTAGATCACATTT

Position: -301 Score: 4 Sequence: TAGCTTGATTTTTATCACTCTT Position: -140 Score: 4.2 Sequence: ATTTGAGAGCTATATCGCAGTT Locus tag: Shal_1257
	Shal_1257	-301	4	TAGCTTGATTTTTATCACTCTT
		-140	4.2	ATTTGAGAGCTATATCGCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3406
Ortholog function: FIG024006: iron uptake protein
Shewanella pealeana ATCC 700345	Spea_1223	-248	3.8	TATTTTGATGTTTACCTCGCAT
Shewanella halifaxensis HAW-EB4	Shal_1257	-301	4	TAGCTTGATTTTTATCACTCTT
		-140	4.2	ATTTGAGAGCTATATCGCAGTT

Position: -319 Score: 3.9 Sequence: AAGAGTGATAAAAATCAAGCTA Locus tag: Shal_1258
	Shal_1258	-319	3.9	AAGAGTGATAAAAATCAAGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiA-1
Ortholog function: ribosomal subunit interface protein
Shewanella oneidensis MR-1	SO3403	-142	4.7	TTCTTTGATAGGTCTCACATTT
Shewanella putrefaciens CN-32	Sputcn32_2725	-145	4.9	TTCTTTGATGTAACTCACATTT
Shewanella sp W3-18-1	Sputw3181_1287	-145	4.9	TTCTTTGATGTAACTCACATTT
Shewanella sp ANA-3	Shewana3_1151	-142	4.6	TTCTTTGATAAGTCTCACATTT
Shewanella sp MR-4	Shewmr4_1150	-142	4.6	TTCTTTGATAAATCTCACATTT
Shewanella sp MR-7	Shewmr7_1221	-142	5	TTTTTTGATAAATCTCACATTT
Shewanella baltica OS155	Sbal_1239	-222	4.2	TTTTGTGATTGATTTATTATTA
		-144	4.3	CTTCTTGATGGCGGTCACATTT
Shewanella halifaxensis HAW-EB4	Shal_1258	-319	3.9	AAGAGTGATAAAAATCAAGCTA
		-230	3.8	TATCCTGATGAATGCCACAATT
Shewanella piezotolerans WP3	swp_3408	-177	4.1	TGATGTGATAAAAAGCACTCAT

Position: -67 Score: 4.4 Sequence: AAGTTTGATCTACAGCTCATTT Locus tag: Shal_1266
	Shal_1266	-67	4.4	AAGTTTGATCTACAGCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE
Ortholog function: acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella loihica PV-4	Shew_3003	-49	4.9	TTTTGTGACGTAATGCACACTA
Shewanella pealeana ATCC 700345	Spea_1234	-68	3.9	AAATTTGATCTATGCCTCGTTT
Shewanella halifaxensis HAW-EB4	Shal_1266	-67	4.4	AAGTTTGATCTACAGCTCATTT
Shewanella piezotolerans WP3	swp_3422	-67	4.4	AAATTTGATCTGCCGCTCAATT

Position: -340 Score: 3.7 Sequence: TTGATTGATTTGAATCAATTTT Position: -234 Score: 4.1 Sequence: ATTTGGGATGAGTATCACGGAA Locus tag: Shal_1381
	Shal_1381	-340	3.7	TTGATTGATTTGAATCAATTTT
		-234	4.1	ATTTGGGATGAGTATCACGGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: cytochrome d ubiquinol oxidase, subunit I, CydA
Shewanella oneidensis MR-1	SO3286	-203	4.2	TAGTGTGACTAGGGTCTCAGTA
Shewanella putrefaciens CN-32	Sputcn32_2641	-204	4.3	TAGTGTGACGCTTGTCCCAATA
Shewanella sp W3-18-1	Sputw3181_1366	-204	4.3	TAGTGTGACGCTTGTCCCAATA
Shewanella sp ANA-3	Shewana3_1241	-203	4.2	TAGTGTGACTAGGGTCTCAGTA
Shewanella sp MR-4	Shewmr4_1239	-203	4.2	TAGTGTGACTAGGGTCTCAGTA
Shewanella sp MR-7	Shewmr7_1310	-203	4.2	TAGTGTGACTAGGGTCTCAGTA
Shewanella baltica OS155	Sbal_2979	-207	4.4	TAGTGTGACTCGCGTCTCAATA
Shewanella denitrificans OS217	Sden_1274	-157	4.1	TAAATTGATCTAAATCAATTTA
Shewanella frigidimarina NCIMB 400	Sfri_1142	-240	4.2	AAATCTAATGCTGGTCACATAA
Shewanella loihica PV-4	Shew_1302	-206	4.7	TTTTGTGAGCCGCCTCTCAAAA
Shewanella pealeana ATCC 700345	Spea_1318	-235	4	ATTCGGGATGGGTGTCACAAAG
Shewanella halifaxensis HAW-EB4	Shal_1381	-234	4.1	ATTTGGGATGAGTATCACGGAA
Shewanella piezotolerans WP3	swp_1469	-231	4.2	AGGTGAGACGGTGATCACAATA
Shewanella sediminis HAW-EB3	Ssed_3118	-203	4	TAGTGTGAAGTTCGTCGTAAAA
Shewanella woodyi ATCC 51908	Swoo_1565	-204	3.8	TTTTGTGAGATCGGTCGGAAAG

Position: -86 Score: 4.7 Sequence: AACCGTGATCTAGTTAACAAAA Locus tag: Shal_1531
	Shal_1531	-86	4.7	AACCGTGATCTAGTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1	SO1666	-75	4.5	AACTGTGAGGGAGTTAACAAAA
Shewanella putrefaciens CN-32	Sputcn32_1386	-75	4.7	AAGTGTGAGGGAGTTAACAAAA
Shewanella sp W3-18-1	Sputw3181_2715	-75	4.7	AAGTGTGAGGGAGTTAACAAAA
Shewanella sp ANA-3	Shewana3_2781	-75	4.5	AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-4	Shewmr4_2607	-75	4.5	AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-7	Shewmr7_2674	-75	4.5	AACTGTGAGGGAGTTAACAAAA
Shewanella baltica OS155	Sbal_1484	-75	4.7	AAGTGTGAGGGAGTTAACAAAT
Shewanella denitrificans OS217	Sden_2595	-61	4.1	AATTGTGCGCCATGGCACACTA
Shewanella frigidimarina NCIMB 400	Sfri_1328	-74	4.5	AACTGTGAGGGAGTTAACAAAA
Shewanella amazonensis SB2B	Sama_2222	-76	4.6	AAACGTGAGGCAGTTAACAAAA
Shewanella loihica PV-4	Shew_1435	-40	4.7	AAGTGTGATCCTGTTAACAAAC
Shewanella pealeana ATCC 700345	Spea_1448	-126	4.9	AACTGTGATCGGGTTAACAATT
Shewanella halifaxensis HAW-EB4	Shal_1531	-86	4.7	AACCGTGATCTAGTTAACAAAA
Shewanella piezotolerans WP3	swp_1650	-76	5	AACTGTGATCTGGTTAACAAAA
Shewanella sediminis HAW-EB3	Ssed_2930	-75	4.8	AACTGTGATGGAGTTAACAAAA
Shewanella woodyi ATCC 51908	Swoo_1715	-74	4.7	AAGTGTGAAGTGGTTAACAAAA

Position: -144 Score: 4.5 Sequence: CAGTGTGATTTATCTCACGCTA Locus tag: Shal_1534
	Shal_1534	-144	4.5	CAGTGTGATTTATCTCACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fahA
Ortholog function: Fumarylacetoacetate hydrolase family protein
Shewanella oneidensis MR-1	SO1670	-200	5.1	AAATGTGATTTTGTTCACGCTA
Shewanella putrefaciens CN-32	Sputcn32_1389	-229	5	AAATGTGATTTGTGTCACGCTA
Shewanella sp W3-18-1	Sputw3181_2712	-229	5	AAATGTGATTTGTGTCACGCTA
Shewanella sp ANA-3	Shewana3_2778	-197	5.1	AAATGTGATTTTGCTCACGCTA
Shewanella sp MR-4	Shewmr4_2604	-196	5.1	AAATGTGATTTTGCTCACGCTA
Shewanella sp MR-7	Shewmr7_2671	-196	5.1	AAATGTGATTTTGCTCACGCTA
Shewanella baltica OS155	Sbal_1487	-235	5	AAATGTGATTTTGGTCACGCTA
Shewanella denitrificans OS217	Sden_2592	-107	4.7	AAATGTGATTTTGCGCACGCTA
Shewanella frigidimarina NCIMB 400	Sfri_1331	-116	4.1	AAATGTGATTTGGTACTTACTA
Shewanella amazonensis SB2B	Sama_2219	-111	5	AATTGTGATTTGAGTCACGCTA
Shewanella loihica PV-4	Shew_1438	-130	4.4	GAGTGTGATTTGTATCACGCTA
Shewanella pealeana ATCC 700345	Spea_1451	-158	5.3	AAGTGTGATTTCGTTCACACTA
Shewanella halifaxensis HAW-EB4	Shal_1534	-144	4.5	CAGTGTGATTTATCTCACGCTA
Shewanella piezotolerans WP3	swp_1653	-140	5	TAGTGTGATTTAGCTCACGCTA
Shewanella sediminis HAW-EB3	Ssed_2927	-116	4.1	GAGCGTGATTCATGTCACACTA
Shewanella woodyi ATCC 51908	Swoo_1718	-133	5	TATTGTGATTTGTGTCACGCTA

Position: -207 Score: 4 Sequence: AAACGCGATATAAATCACTTTC Locus tag: Shal_1548
	Shal_1548	-207	4	AAACGCGATATAAATCACTTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3120
Ortholog function: oxidoreductase, Gfo/Idh/MocA family
Shewanella oneidensis MR-1	SO3120	-186	4.3	AAACGCGATCTTTATCACTATT
Shewanella putrefaciens CN-32	Sputcn32_2490	-173	4.3	AAACGCGATCTTTATCACTATT
Shewanella sp W3-18-1	Sputw3181_1518	-173	4.3	AAACGCGATCTTTATCACTATT
Shewanella sp ANA-3	Shewana3_1428	-187	4.3	AAACGCGATCTTTATCACTATT
Shewanella sp MR-4	Shewmr4_1375	-186	4.3	AAACGCGATCTTTATCACTATT
Shewanella sp MR-7	Shewmr7_1440	-186	4.3	AAACGCGATCTTTATCACTATT
Shewanella baltica OS155	Sbal_2793	-202	4.3	AAACGCGATCTTTATCACTATT
Shewanella pealeana ATCC 700345	Spea_1465	-158	4	AAACGCGATATAAATCACTTTC
Shewanella halifaxensis HAW-EB4	Shal_1548	-207	4	AAACGCGATATAAATCACTTTC
Shewanella piezotolerans WP3	swp_1670	-185	3.7	AAACGCGATTTAAGTCACTTTC
Shewanella woodyi ATCC 51908	Swoo_1749	-214	4.2	AAACGCGATCTAAGTCACTTAA

Position: -148 Score: 4.1 Sequence: GAAAGTGATTTATATCGCGTTT Locus tag: Shal_1549
	Shal_1549	-148	4.1	GAAAGTGATTTATATCGCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3119
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO3119	-166	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella putrefaciens CN-32	Sputcn32_2489	-171	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella sp W3-18-1	Sputw3181_1519	-171	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella sp ANA-3	Shewana3_1429	-171	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella sp MR-4	Shewmr4_1376	-171	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella sp MR-7	Shewmr7_1441	-171	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella baltica OS155	Sbal_2792	-171	4.5	AATAGTGATAAAGATCGCGTTT
Shewanella amazonensis SB2B	Sama_2198	-151	4.4	AATAGTGATTAAGCTCGCGTTT
Shewanella pealeana ATCC 700345	Spea_1466	-148	4.1	GAAAGTGATTTATATCGCGTTT
Shewanella halifaxensis HAW-EB4	Shal_1549	-148	4.1	GAAAGTGATTTATATCGCGTTT
Shewanella piezotolerans WP3	swp_1671	-220	3.8	GAAAGTGACTTAAATCGCGTTT
Shewanella sediminis HAW-EB3	Ssed_2897	-173	4.7	TAAAGTGATTTAGATCGCGTTT
Shewanella woodyi ATCC 51908	Swoo_1750	-148	4.4	TTAAGTGACTTAGATCGCGTTT

Position: -84 Score: 4.7 Sequence: AATTGTGAACAACATCACACAG Locus tag: Shal_1567
	Shal_1567	-84	4.7	AATTGTGAACAACATCACACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2806
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO2806	-95	4.3	TCTTGTGAATTGAGTCACATAG
Shewanella putrefaciens CN-32	Sputcn32_1554	-95	4	TCTTGTGAATTGAGTCACAGAG
Shewanella sp W3-18-1	Sputw3181_2545	-95	4	TCTTGTGAATTGAGTCACAGAG
Shewanella sp ANA-3	Shewana3_2588	-95	4	TCTTGTGAATTGAGTCACAGAG
Shewanella sp MR-4	Shewmr4_2426	-95	4	TCTTGTGAATTGAGTCACAGAG
Shewanella sp MR-7	Shewmr7_2496	-95	4	TCTTGTGAATTGAGTCACAGAG
Shewanella baltica OS155	Sbal_1679	-94	4.2	ATCTGTGAATTAAGTCACACAG
Shewanella denitrificans OS217	Sden_1453	-35	3.9	ATATTTTATGCCGTTCACTCAT
Shewanella amazonensis SB2B	Sama_1287	-85	4	AATTGTGAAGCCAGTCACGGTG
Shewanella pealeana ATCC 700345	Spea_1483	-84	4.4	AATTGTGAATAACGTCACACAG
Shewanella halifaxensis HAW-EB4	Shal_1567	-84	4.7	AATTGTGAACAACATCACACAG
Shewanella piezotolerans WP3	swp_1689	27	4.3	AACTGTGAAAGGTATCACACAC
Shewanella sediminis HAW-EB3	Ssed_2877	-82	4.5	TAATGTGAATGGCGTCACACAG
Shewanella woodyi ATCC 51908	Swoo_1771	-81	4.6	TATTGTGAAAGTCATCACACAG

Position: -80 Score: 4 Sequence: TAGTGTGATTGATATCTATAAT Locus tag: Shal_1587
	Shal_1587	-80	4	TAGTGTGATTGATATCTATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2010
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO2010	-70	4.7	TTTTGTGATCTTCGTCACTGTA
Shewanella putrefaciens CN-32	Sputcn32_2305	-65	5.1	TTTTGTGATCTCCATCACCGTT
Shewanella sp W3-18-1	Sputw3181_1703	-65	5.1	TTTTGTGATCTCCATCACCGTT
Shewanella sp MR-4	Shewmr4_2257	-65	4.9	TTTTGTGATCTTAATCACTGTA
Shewanella sp MR-7	Shewmr7_2329	-65	4.9	TTTTGTGATCTTAATCACTGTA
Shewanella baltica OS155	Sbal_2577	-65	5	TTTTGTGATCTAAATCACTGTA
Shewanella denitrificans OS217	Sden_2384	-81	4.8	AAATGTGATCCAGCTCAGCTTT
Shewanella frigidimarina NCIMB 400	Sfri_2410	-116	4.8	TTTTGTGATCGACTTCACGTCT
Shewanella amazonensis SB2B	Sama_1307	-51	4.3	TTTTGTGAGCTGCATCACGGCA
Shewanella loihica PV-4	Shew_2238	-48	4.1	AAAATTGATCTAGATCAATAAA
Shewanella pealeana ATCC 700345	Spea_1505	-51	4.1	AAAATTGATCTAGATCAATAAA
Shewanella halifaxensis HAW-EB4	Shal_1587	-80	4	TAGTGTGATTGATATCTATAAT
Shewanella piezotolerans WP3	swp_1711	-21	4.1	AAAATTGATCTAGATCAATAAA
Shewanella sediminis HAW-EB3	Ssed_2855	-49	4.1	AAAATTGATCTAGATCAATAAA
Shewanella woodyi ATCC 51908	Swoo_1790	-48	4.1	TAAATTGATCTAGATCAATAAA

Position: -113 Score: 3.7 Sequence: AAACGTGATATTCATCGATATC Locus tag: Shal_1618
	Shal_1618	-113	3.7	AAACGTGATATTCATCGATATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3682
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO3682	-109	3.8	TTGCGTGATTTTGTGCAAGCAT
Shewanella putrefaciens CN-32	Sputcn32_2981	-76	3.8	ATTTTTGAGCAAGATCACGGCT
Shewanella sp W3-18-1	Sputw3181_0966	-76	3.8	ATTTTTGAGCAAGATCACGGCT
Shewanella sp MR-4	Shewmr4_0873	-166	3.7	TGACGTGATTTGTGGCGTATAA
Shewanella sp MR-7	Shewmr7_3149	-166	3.7	TGACGTGATTTGTGGCGTATAA
Shewanella baltica OS155	Sbal_3331	-76	3.7	ATTTTTGAGCAATATCACGGCT
Shewanella amazonensis SB2B	Sama_2854	-78	4	AAACTTGATCTGGATCACGAGT
Shewanella loihica PV-4	Shew_3102	-84	4.2	AAATGTGATCTGGATCAAGTGG
Shewanella pealeana ATCC 700345	Spea_3356	-102	4.7	AATTGTGAGCTAGATCAAACTC
Shewanella halifaxensis HAW-EB4	Shal_3428	-90	4.8	AATTGTGACTGAGATCAAATTC
Shewanella piezotolerans WP3	swp_1054	-79	4.3	TTTTGTGAGCAAGATCAACTTC
Shewanella sediminis HAW-EB3	Ssed_3715	-111	4.2	CAGTGTGATCTCGATCAACTTC

Position: -100 Score: 4.3 Sequence: ATGCTTGATCTAGCTCAAACTT Locus tag: Shal_1659
	Shal_1659	-100	4.3	ATGCTTGATCTAGCTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_2271
Ortholog function: permease of the major facilitator superfamily
Shewanella frigidimarina NCIMB 400	Sfri_2271	-125	4.1	TTTTATGACTTAGGTCAACTTA
Shewanella loihica PV-4	Shew_1497	-123	4.3	TAACTTGAACTGGCTCACGTAA
Shewanella pealeana ATCC 700345	Spea_1591	-100	4.8	ATATTTGATCCAGCTCAAACTT
Shewanella halifaxensis HAW-EB4	Shal_1659	-100	4.3	ATGCTTGATCTAGCTCAAACTT
Shewanella piezotolerans WP3	swp_1789	-100	4.1	CTCTATGATATAGCTCACAGAT
Shewanella sediminis HAW-EB3	Ssed_1826	-165	3.8	CAACTTGATTTCGCTCAAGTAT
Shewanella woodyi ATCC 51908	Swoo_2762	-220	4.1	AAACTTGATTTCGCTCAAGTAA

Position: -227 Score: 3.7 Sequence: CTATTTGATATCAATATCACTT Position: -225 Score: 3.9 Sequence: ATTTGATATCAATATCACTTTT Locus tag: Shal_1682
	Shal_1682	-227	3.7	CTATTTGATATCAATATCACTT
		-225	3.9	ATTTGATATCAATATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2757
Ortholog function: Histidine permease YuiF
Shewanella oneidensis MR-1	SO2757	-225	4.2	ATTTAAGACCAATATCACATTT
Shewanella putrefaciens CN-32	Sputcn32_1598	-225	4.2	ATTTAAGACCAATATCACATTT
Shewanella sp W3-18-1	Sputw3181_2424	-225	4.2	ATTTAAGACCAATATCACATTT
Shewanella sp ANA-3	Shewana3_2542	-225	4.2	ATTTAAGACCAATATCACATTT
Shewanella sp MR-4	Shewmr4_2377	-225	4.2	ATTTAAGACCAATATCACATTT
Shewanella sp MR-7	Shewmr7_2449	-225	4.2	ATTTAAGACCAATATCACATTT
Shewanella baltica OS155	Sbal_1737	-227	4.2	ATTTAAGACCAATATCACATTT
Shewanella denitrificans OS217	Sden_2092	-208	4.3	ATATGCGAGAGGGATCACAATC
Shewanella frigidimarina NCIMB 400	Sfri_1454	-191	3.5	TTAAATAATAAGTTTCAAATAT
Shewanella amazonensis SB2B	Sama_2095	-210	3.9	AATTTGGAGGAATATCACACAA
Shewanella loihica PV-4	Shew_1515	-230	4	ATTTGGGATCATTGTCACTTTT
Shewanella halifaxensis HAW-EB4	Shal_1682	-225	3.9	ATTTGATATCAATATCACTTTT
Shewanella piezotolerans WP3	swp_1820	-77	4.1	ATTTGAGAGCAATATCACTTTT
Shewanella sediminis HAW-EB3	Ssed_1847	-226	4.5	ATTTGGGATCAATATCACCTTT
Shewanella woodyi ATCC 51908	Swoo_2742	-155	4	TTTAGTGCTGTTATTTACACTT

Position: -108 Score: 4.4 Sequence: AAAAGTGATATTGATATCAAAT Locus tag: Shal_1683
	Shal_1683	-108	4.4	AAAAGTGATATTGATATCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Swoo_2741
Ortholog function: Alkyl hydroperoxide reductase subunit C-like protein
Shewanella putrefaciens CN-32	Sputcn32_1599	-183	4.6	AAATGTGATATTGGTCTTAAAT
Shewanella sp W3-18-1	Sputw3181_2423	-183	4.6	AAATGTGATATTGGTCTTAAAT
Shewanella sp ANA-3	Shewana3_2541	-167	4.6	AAATGTGATATTGGTCTTAAAT
Shewanella sp MR-4	Shewmr4_2376	-167	4.6	AAATGTGATATTGGTCTTAAAT
Shewanella sp MR-7	Shewmr7_2448	-167	4.6	AAATGTGATATTGGTCTTAAAT
Shewanella baltica OS155	Sbal_1738	-183	4.6	AAATGTGATATTGGTCTTAAAT
Shewanella denitrificans OS217	Sden_2091	-88	4.7	GATTGTGATCCCTCTCGCATAT
Shewanella amazonensis SB2B	Sama_2094	-115	4.3	TTGTGTGATATTCCTCCAAATT
Shewanella loihica PV-4	Shew_1516	-105	4.1	AAAAGTGACAATGATCCCAAAT
Shewanella halifaxensis HAW-EB4	Shal_1683	-108	4.4	AAAAGTGATATTGATATCAAAT
Shewanella piezotolerans WP3	swp_1821	-108	4.7	AAAAGTGATATTGCTCTCAAAT
Shewanella sediminis HAW-EB3	Ssed_1848	-106	4.4	AAAGGTGATATTGATCCCAAAT

Position: -266 Score: 3.6 Sequence: TATTGCGGGGTTTGTCACGTTT Position: -97 Score: 3.5 Sequence: TAAAGCGATAAAAATAAGATTA Locus tag: Shal_1686
	Shal_1686	-266	3.6	TATTGCGGGGTTTGTCACGTTT
		-97	3.5	TAAAGCGATAAAAATAAGATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2753
Ortholog function: prolyl endopeptidase (EC 3.4.21.26)
Shewanella oneidensis MR-1	SO2753	-235	4.7	TTAAGTGATCTGCCTCACTTAA
Shewanella putrefaciens CN-32	Sputcn32_1602	-234	4.8	TTAAGTGATCTAGCTCACTTAA
Shewanella sp W3-18-1	Sputw3181_2420	-234	4.8	TTAAGTGATCTAGCTCACTTAA
Shewanella sp ANA-3	Shewana3_2536	-234	4.8	TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-4	Shewmr4_2373	-234	4.8	TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-7	Shewmr7_2445	-234	4.8	TTAAGTGATCTGGCTCACTTAA
Shewanella baltica OS155	Sbal_1741	-233	4.7	AAAGGTGATCTATATCACTTAA
Shewanella amazonensis SB2B	Sama_2091	-226	4.7	TTGTGTGATCTTGCGCACGTTA
Shewanella loihica PV-4	Shew_1522	-276	3.5	ATTTGCGCTTGATTACGCAAAA
Shewanella pealeana ATCC 700345	Spea_2569	-251	3.9	TAGTGTGGGTTTAGTCACACTT
Shewanella halifaxensis HAW-EB4	Shal_1686	-266	3.6	TATTGCGGGGTTTGTCACGTTT
Shewanella piezotolerans WP3	swp_1825	-248	3.6	TTGTGAGTCCTTAATCACGTTT
Shewanella sediminis HAW-EB3	Ssed_1852	-257	3.8	AAGTGTGATCTTGGTCGGTAAA
Shewanella woodyi ATCC 51908	Swoo_2736	-259	3.7	TAGTGTGATCTAGGTTGGGTAA

Position: -140 Score: 4.1 Sequence: ATTTGTGAACTATCTGGCAATT Locus tag: Shal_1712
	Shal_1712	-140	4.1	ATTTGTGAACTATCTGGCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2637
Ortholog function: hypothetical protein
Shewanella amazonensis SB2B	Sama_2066	-139	4	ATTTGTGATCACTGTGGCAATT
Shewanella loihica PV-4	Shew_1556	-132	4.2	AATTGTGATCGGCGTGGCAATT
Shewanella pealeana ATCC 700345	Spea_2542	-138	4.3	ATTTGTGATTTGTCTGGCAATT
Shewanella halifaxensis HAW-EB4	Shal_1712	-140	4.1	ATTTGTGAACTATCTGGCAATT
Shewanella piezotolerans WP3	swp_1858	-143	4.3	ATTTGTGATCCATGTGGCAATT
Shewanella sediminis HAW-EB3	Ssed_1878	-136	4.4	AATTGTGATCTGCGTGGCAATT
Shewanella woodyi ATCC 51908	Swoo_2709	-136	4.4	AATTGTGATCTGTGTGGCAATT

Position: -84 Score: 4.4 Sequence: CAGCGTGATCTACGTCACATTG Locus tag: Shal_1764
	Shal_1764	-84	4.4	CAGCGTGATCTACGTCACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2589
Ortholog function: isopenicillin N synthase
Shewanella frigidimarina NCIMB 400	Sfri_1487	-55	4	AAGTGTGACTAAGGTTACCATT
Shewanella loihica PV-4	Shew_1590	-85	4.3	AAACGTGATTTTTATCACACCC
Shewanella pealeana ATCC 700345	Spea_2507	-84	4.2	AAGCGTGATCTAGCTCACTCAC
Shewanella halifaxensis HAW-EB4	Shal_1764	-84	4.4	CAGCGTGATCTACGTCACATTG
Shewanella piezotolerans WP3	swp_3059	-87	4.2	GAATGTGATCTAGCTCACAGGT
Shewanella sediminis HAW-EB3	Ssed_2637	-51	5.1	AAACGTGATTTCAATCACACTT
Shewanella woodyi ATCC 51908	Swoo_2030	-82	4.2	CAAGGTGATTTATCTCACACAG

Position: -174 Score: 4.7 Sequence: ATATTTGAGTTGATTCACAAAA Locus tag: Shal_1780
	Shal_1780	-174	4.7	ATATTTGAGTTGATTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2773
Ortholog function: hypothetical protein
Shewanella sp ANA-3	Shewana3_2556	-125	4.1	AATTGTGCCGGATATCACTTTC
Shewanella sp MR-4	Shewmr4_2393	-125	4.1	AATTGTGCCGGATATCACTTTC
Shewanella sp MR-7	Shewmr7_2463	-125	4.1	AATTGTGCCGGATATCACTTTC
Shewanella pealeana ATCC 700345	Spea_2491	-172	4.9	ATATTTGAAGTGTTTCACATAA
Shewanella halifaxensis HAW-EB4	Shal_1780	-174	4.7	ATATTTGAGTTGATTCACAAAA

Position: -81 Score: 3.9 Sequence: AACTGAGATCTTCATCTCATTC Locus tag: Shal_1783
	Shal_1783	-81	3.9	AACTGAGATCTTCATCTCATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase (EC 3.5.4.5)
Shewanella oneidensis MR-1	SO2791	-82	4.1	AAACGCGAACTAACTCGCATTT
Shewanella putrefaciens CN-32	Sputcn32_1568	-131	3.8	TATGGTGAAATCGGTCAAATAC
		-82	4.2	AAACGCGAGCTAACTCGCATTT
Shewanella sp W3-18-1	Sputw3181_2531	-131	3.8	TATGGTGAAATCGGTCAAATAC
		-82	4.2	AAACGCGAGCTAACTCGCATTT
Shewanella sp ANA-3	Shewana3_2573	-82	4.1	AAACGCGAACTAACTCGCATTT
Shewanella sp MR-4	Shewmr4_2411	-82	4.1	AAACGCGAACTAACTCGCATTT
Shewanella sp MR-7	Shewmr7_2481	-82	4.1	AAACGCGAACTAACTCGCATTT
Shewanella baltica OS155	Sbal_1694	-157	3.8	ATTCGTGAATAGACTCACTCTA
		-82	4.2	AAACGCGAGCTAACTCGCATTT
Shewanella frigidimarina NCIMB 400	Sfri_1637	-44	3.8	AAATTTTATTTTTATCCAATTT
Shewanella amazonensis SB2B	Sama_1974	-82	4	AAATGGGATTAGACTCCCATTA
Shewanella halifaxensis HAW-EB4	Shal_1783	-81	3.9	AACTGAGATCTTCATCTCATTC
Shewanella piezotolerans WP3	swp_3037	-82	4.1	AAGTGCGATCTCTGTCGCATTC
Shewanella sediminis HAW-EB3	Ssed_2618	-82	3.9	AAATGGGAGCTGGATCTCATCA
Shewanella woodyi ATCC 51908	Swoo_2048	-82	3.9	AAATGGGAGAAAGATCCCATTA

Position: -155 Score: 5 Sequence: TTATGTGATGATAATCAAAATT Locus tag: Shal_1832
	Shal_1832	-155	5	TTATGTGATGATAATCAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD1
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella oneidensis MR-1	SO2581	-155	5.1	TTATGTGATGATGATCAAAATT
Shewanella putrefaciens CN-32	Sputcn32_1761	-154	5.1	TTATGTGATGATGATCAAAATT
Shewanella sp W3-18-1	Sputw3181_2264	-154	5.1	TTATGTGATGATGATCAAAATT
Shewanella sp ANA-3	Shewana3_2386	-155	5.1	TTATGTGATGATGATCAAAATT
Shewanella sp MR-4	Shewmr4_2177	-155	5.1	TTATGTGATGATGATCAAAATT
Shewanella sp MR-7	Shewmr7_2254	-155	5.1	TTATGTGATGATGATCAAAATT
Shewanella baltica OS155	Sbal_1864	-156	5.1	TTATGTGATGATGATCAAAATT
Shewanella denitrificans OS217	Sden_1625	-189	4.1	TTATGTGATTATGGGCCCAAAT
Shewanella frigidimarina NCIMB 400	Sfri_1733	-165	4.7	TTATGTGATTATGATCGAAAAT
Shewanella amazonensis SB2B	Sama_1934	-140	4.8	TTATGTGATGATTGTCAAAAAT
Shewanella loihica PV-4	Shew_2188	-149	4.9	TTGTGTGATGATGTTCAAAATT
Shewanella pealeana ATCC 700345	Spea_2448	-156	5	TTATGTGATGATAATCAAAATT
Shewanella halifaxensis HAW-EB4	Shal_1832	-155	5	TTATGTGATGATAATCAAAATT
Shewanella piezotolerans WP3	swp_2289	-153	5	ATATGTGATGATAATCAAAATT
Shewanella sediminis HAW-EB3	Ssed_2523	-151	5	TTATGTGATGATGATCATAATT
Shewanella woodyi ATCC 51908	Swoo_2110	-153	5.1	TTATGTGATGATGTTCAAAATT

Position: -70 Score: 4.3 Sequence: AATTGTGAGATAAACCTCAAAA Position: -68 Score: 3.6 Sequence: TTGTGAGATAAACCTCAAAACA Locus tag: Shal_1890
	Shal_1890	-70	4.3	AATTGTGAGATAAACCTCAAAA
		-68	3.6	TTGTGAGATAAACCTCAAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE2
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella oneidensis MR-1	SO2536	-72	4.8	AATTGTGATCGCAATCAACAAA
Shewanella putrefaciens CN-32	Sputcn32_1791	-72	4.6	AATTGTGATCGCCATCAATAAA
Shewanella sp W3-18-1	Sputw3181_2234	-72	4.6	AATTGTGATCGCCATCAATAAA
Shewanella sp ANA-3	Shewana3_2323	-72	4.8	AATTGTGATCGCAATCAACAAA
Shewanella sp MR-4	Shewmr4_2146	-72	4.8	AATTGTGATCGCAATCAACAAA
Shewanella sp MR-7	Shewmr7_2223	-72	4.8	AATTGTGATCGCAATCAACAAA
Shewanella baltica OS155	Sbal_2306	-72	4.8	AATTGTGATCGCAATCAACAAA
Shewanella denitrificans OS217	Sden_1764	-66	3.8	ACTTGTGAATAGGATCATCATA
Shewanella frigidimarina NCIMB 400	Sfri_1869	-67	3.8	TCTTGTGAATGAGATCAATAAT
Shewanella amazonensis SB2B	Sama_1870	-64	4.3	ACTTGTGATCAGGATCGCTTAT
Shewanella loihica PV-4	Shew_2108	-71	4.9	AATTGTGATTATGGTCATATAA
Shewanella pealeana ATCC 700345	Spea_2393	-70	4.5	AATTGTGAGATAGAACTCAAAA
Shewanella halifaxensis HAW-EB4	Shal_1890	-70	4.3	AATTGTGAGATAAACCTCAAAA
Shewanella piezotolerans WP3	swp_2312	-97	3.5	AATTGTGACGTAGACCCGCAAA
Shewanella sediminis HAW-EB3	Ssed_1999	-71	4.5	AATTGTGATTATGATCAATAAA
Shewanella woodyi ATCC 51908	Swoo_2604	-73	4.8	AATTGTGATATCGATCAATATA

Position: -201 Score: 4 Sequence: TGTTTTGAGGTTTATCTCACAA Position: -199 Score: 4.2 Sequence: TTTTGAGGTTTATCTCACAATT Locus tag: Shal_1891
	Shal_1891	-201	4	TGTTTTGAGGTTTATCTCACAA
		-199	4.2	TTTTGAGGTTTATCTCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2535
Ortholog function: Predicted glutamine amidotransferase
Shewanella oneidensis MR-1	SO2535	-194	4.4	TTTGTTGATTGCGATCACAATT
Shewanella putrefaciens CN-32	Sputcn32_1792	-193	4.7	TTTATTGATGGCGATCACAATT
Shewanella sp W3-18-1	Sputw3181_2233	-193	4.7	TTTATTGATGGCGATCACAATT
Shewanella sp ANA-3	Shewana3_2322	-133	4.4	TTTGTTGATTGCGATCACAATT
Shewanella sp MR-4	Shewmr4_2145	-193	4.4	TTTGTTGATTGCGATCACAATT
Shewanella sp MR-7	Shewmr7_2222	-193	4.4	TTTGTTGATTGCGATCACAATT
Shewanella baltica OS155	Sbal_2305	-193	4.4	TTTGTTGATTGCGATCACAATT
Shewanella denitrificans OS217	Sden_1765	-204	3.7	TATGATGATCCTATTCACAAGT
Shewanella frigidimarina NCIMB 400	Sfri_1870	-203	3.9	ATTATTGATCTCATTCACAAGA
Shewanella amazonensis SB2B	Sama_1869	-195	3.9	ATAAGCGATCCTGATCACAAGT
Shewanella loihica PV-4	Shew_2107	-191	4.6	TTATATGACCATAATCACAATT
Shewanella pealeana ATCC 700345	Spea_2392	-196	4.4	TTTTGAGTTCTATCTCACAATT
Shewanella halifaxensis HAW-EB4	Shal_1891	-199	4.2	TTTTGAGGTTTATCTCACAATT
Shewanella sediminis HAW-EB3	Ssed_2000	-191	4.5	TTTATTGATCATAATCACAATT
Shewanella woodyi ATCC 51908	Swoo_2603	-190	4.8	TATATTGATCGATATCACAATT

Position: -306 Score: 5.5 Sequence: AATTGTGATGCGCGTCACAATT Locus tag: Shal_1923
	Shal_1923	-306	5.5	AATTGTGATGCGCGTCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2427
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1	SO2427	-319	5.1	AAGTGTGATTAAAATCACACTT
Shewanella putrefaciens CN-32	Sputcn32_1940	-318	5.7	TAGTGTGATCTACATCACATAA
		-274	4	AAATGTTATTTTATTAACAGAG
Shewanella sp W3-18-1	Sputw3181_2068	-318	4.6	GCGTGTGATCTATATCACATAA
Shewanella sp ANA-3	Shewana3_1958	-320	5.2	AAGTGTGACACACATCACATAT
		-276	4.4	AAATGTTATTTTCTTAACAGTT
Shewanella sp MR-4	Shewmr4_1903	-319	5.6	AAATGTGATGTGCGTCACATTT
		-275	3.9	AAATGTTATTTTATTAACAGCT
Shewanella sp MR-7	Shewmr7_2075	-319	5.2	AAGTGTGACGTGTGTCACATTT
		-275	4.3	AAATGTTATTTTATTAACAGTA
Shewanella baltica OS155	Sbal_2044	-317	5.1	AAGCGTGATCTGTGTCACATTT
Shewanella frigidimarina NCIMB 400	Sfri_2416	-149	5	AAATGTGATGTTGTTCACATGT
		-4	4.1	ATTCATGAGTTCAGTCACATTA
Shewanella amazonensis SB2B	Sama_1838	-324	3.8	TTAATCGATATGGGTCACAGAA
		-301	5.2	AAGTGTGATGCACGTCACAAAA
Shewanella loihica PV-4	Shew_2074	-308	5.1	TTTTGTGATAATGGTCACACTT
Shewanella halifaxensis HAW-EB4	Shal_1923	-306	5.5	AATTGTGATGCGCGTCACAATT
		-199	4.1	ACTTGTGCTGTTTGTCACAATG
Shewanella piezotolerans WP3	swp_2362	-310	4.7	AAGCGTGACCTGTGTCACACTT
Shewanella sediminis HAW-EB3	Ssed_2036	-316	4.6	TTTCGTGACGCGCGTCACAGTT
Shewanella woodyi ATCC 51908	Swoo_2565	-321	4.9	TTCTGTGACCTGTGTCACAAAA

Position: -95 Score: 4 Sequence: TAAATTGATCTCGCTCAATTTT Locus tag: Shal_1924
	Shal_1924	-95	4	TAAATTGATCTCGCTCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gloA
Ortholog function: lactoylglutathione lyase (EC 4.4.1.5)
Shewanella putrefaciens CN-32	Sputcn32_2101	-120	3.8	TTTTGTGAGCAACAACCAATTT
		-4	3.8	ATTAATGATCTCGTTAACGCAA
Shewanella sp W3-18-1	Sputw3181_1911	-120	3.8	TTTTGTGAGCAACAACCAATTT
		-4	3.8	ATTAATGATCTCGTTAACGCAA
Shewanella sp ANA-3	Shewana3_2232	-205	4	TTTTGTGAGCAAGAGCTAAATA
		-153	4.4	CAAAGTGACGTAGCTCACAAAG
Shewanella sp MR-4	Shewmr4_2107	-205	4	TTTTGTGAGCAAGAGCTAAATA
		-153	4.8	CAAAGTGATACAGCTCACATTA
Shewanella sp MR-7	Shewmr7_1867	-205	4	TTTTGTGAGCAAGAGCTAAATA
		-153	4.8	CAAAGTGATACAGCTCACATTA
Shewanella baltica OS155	Sbal_2269	-196	4	TTTTGTGAGCGACAGCCAATTT
Shewanella baltica OS155	Sbal_4555	-196	4	TTTTGTGAGCGACAGCCAATTT
Shewanella frigidimarina NCIMB 400	Sfri_2179	-101	4.6	AAATGTGAACTAAAGCAAAATT
Shewanella frigidimarina NCIMB 400	Sfri_2098	-213	3.8	AAACGTTAAATCCATTACATTA
		-41	3.7	TTTAATGATGCGATTCAGAGAT
Shewanella amazonensis SB2B	Sama_1837	-96	4.3	AACTGTGAGTTGCTTCAGATTT
Shewanella halifaxensis HAW-EB4	Shal_1924	-95	4	TAAATTGATCTCGCTCAATTTT
Shewanella sediminis HAW-EB3	Ssed_2709	-312	3.8	TTTTGTAATTTTTTAAACAGTA
Shewanella woodyi ATCC 51908	Swoo_2563	-243	3.8	TTTTATGACTCTATTAATATAA

Position: -182 Score: 4.5 Sequence: AATCGTGATAAACCACACAAAA Locus tag: Shal_2000
	Shal_2000	-182	4.5	AATCGTGATAAACCACACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_4302
Ortholog function: hypothetical protein
Shewanella pealeana ATCC 700345	Spea_2293	-183	4.4	AAGCGTGATTGACCACACAAAA
Shewanella halifaxensis HAW-EB4	Shal_2000	-182	4.5	AATCGTGATAAACCACACAAAA
Shewanella piezotolerans WP3	swp_4302	-180	4.3	TTTAGTGATAGAGCACACAGAA
Shewanella woodyi ATCC 51908	Swoo_2973	-185	4	TTCAGTGATGTAGAACTCAAAA

Position: -157 Score: 4.3 Sequence: TAATGTGATTTTCAGAATAATT Locus tag: Shal_2004
	Shal_2004	-157	4.3	TAATGTGATTTTCAGAATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_4060
Ortholog function: phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
Shewanella sp ANA-3	Shewana3_0861	-204	4	AAACTTGCATCAGCTCACATAA
Shewanella sp MR-4	Shewmr4_3074	-203	3.9	AAACTTGCGTCACCTCACATAA
Shewanella sp MR-7	Shewmr7_0898	-204	4	AAACTTGCATCAGCTCACATAA
Shewanella frigidimarina NCIMB 400	Sfri_3189	-251	4.5	ATATTTGACCATGTTCAAATAT
Shewanella loihica PV-4	Shew_0671	-217	4	AATAGTGATGAGGTTAATATAG
Shewanella pealeana ATCC 700345	Spea_0661	-283	4.1	TTATGTGCCATGCAACACATTG
Shewanella halifaxensis HAW-EB4	Shal_3535	-147	3.9	AAATATGAGCTTGTTCCAAATT
Shewanella halifaxensis HAW-EB4	Shal_2004	-157	4.3	TAATGTGATTTTCAGAATAATT
Shewanella piezotolerans WP3	swp_4060	-318	4.3	TGAGGTGATGCATATCATAAAA

Position: -95 Score: 4.4 Sequence: TTATTTGACGCAGTTAACACAA Locus tag: Shal_2063
	Shal_2063	-95	4.4	TTATTTGACGCAGTTAACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: apbE
Ortholog function: thiamin biosynthesis lipoprotein ApbE
Shewanella oneidensis MR-1	SO1418	-91	3.8	ATCTATGAGTTAGCTAACACTT
Shewanella loihica PV-4	Shew_1971	-99	4.9	TATTTTGATCTGCTTAACAAAA
Shewanella pealeana ATCC 700345	Spea_2090	-32	4.4	TTATTTGACACAGTTAACACTA
Shewanella halifaxensis HAW-EB4	Shal_2063	-95	4.4	TTATTTGACGCAGTTAACACAA
Shewanella piezotolerans WP3	swp_2515	-105	4.4	TTGTTTGACAGAGATAACATTT
Shewanella sediminis HAW-EB3	Ssed_2280	-209	4.5	ATATTTGACCCAGTTAACACAT

Position: -93 Score: 4.1 Sequence: TTGTGTTAACTGCGTCAAATAA Locus tag: Shal_2064
	Shal_2064	-93	4.1	TTGTGTTAACTGCGTCAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1419
Ortholog function: lipoprotein, putative
Shewanella oneidensis MR-1	SO1419	-117	3.9	AAGTGTTAGCTAACTCATAGAT
Shewanella loihica PV-4	Shew_1972	-120	4.5	TTTTGTTAAGCAGATCAAAATA
Shewanella pealeana ATCC 700345	Spea_2091	-120	4.2	TAGTGTTAACTGTGTCAAATAA
Shewanella halifaxensis HAW-EB4	Shal_2064	-93	4.1	TTGTGTTAACTGCGTCAAATAA
Shewanella piezotolerans WP3	swp_2516	-119	4.5	AAATGTTATCTCTGTCAAACAA
Shewanella sediminis HAW-EB3	Ssed_2279	-159	4.2	ATGTGTTAACTGGGTCAAATAT

Position: -221 Score: 4.5 Sequence: AGATTTGATCTAGATCAACTTT Position: -178 Score: 4.6 Sequence: TTTTTTGATATAGCTCAAGTAT Locus tag: Shal_2197
	Shal_2197	-221	4.5	AGATTTGATCTAGATCAACTTT
		-178	4.6	TTTTTTGATATAGCTCAAGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Shewanella oneidensis MR-1	SO2364	-173	4.3	TTTTTTGACATGGCTCAAGTAT
		-125	4.1	AAATGTGAAGGATAACGCATTG
Shewanella putrefaciens CN-32	Sputcn32_1959	-171	4.2	TTTTTTGACATTGCTCAAGTAT
Shewanella sp W3-18-1	Sputw3181_2046	-171	4.2	TTTTTTGACATTGCTCAAGTAT
Shewanella sp ANA-3	Shewana3_2107	-171	4.3	TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-4	Shewmr4_2006	-171	4.3	TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-7	Shewmr7_1969	-171	4.3	TTTTTTGACATGGCTCAAGTAT
Shewanella baltica OS155	Sbal_2201	-173	4.5	TTTTTTGATATTGCTCAAGTAT
Shewanella baltica OS155	Sbal_4487	-173	4.5	TTTTTTGATATTGCTCAAGTAT
Shewanella denitrificans OS217	Sden_1851	-182	4.7	TTTTTTGATGTAGCTCAAGTAT
Shewanella frigidimarina NCIMB 400	Sfri_2010	-186	4.4	TTTTTTGACTTAGCTCAAGTAT
Shewanella amazonensis SB2B	Sama_1791	-180	4.3	TTTTTTGACACAGCTCAAGTAT
Shewanella loihica PV-4	Shew_1985	-178	4.5	TTTTTTGATATTGCTCAAGTAT
Shewanella pealeana ATCC 700345	Spea_2214	-219	4.1	TACCTTGATCTAGATCAACTTA
		-176	4.6	TTTTTTGATATAGCTCAAGTAT
Shewanella halifaxensis HAW-EB4	Shal_2197	-221	4.5	AGATTTGATCTAGATCAACTTT
		-178	4.6	TTTTTTGATATAGCTCAAGTAT
Shewanella piezotolerans WP3	swp_2572	-221	4.3	TAGCTTGATCTAGATCAACTTT
		-178	4.4	TTTTTTGACATAGCTCAAGTAT
Shewanella sediminis HAW-EB3	Ssed_2211	-177	4.4	TTTTTTGACATAGCTCAAGTAT
Shewanella woodyi ATCC 51908	Swoo_2425	-220	4.3	TAGCTTGATCTAGATCAACTTT
		-177	4.4	TTTTTTGACATAGCTCAAGTAT

Position: -162 Score: 4.3 Sequence: AAATGTGATGTTTAACTCAAAC Locus tag: Shal_2256
	Shal_2256	-162	4.3	AAATGTGATGTTTAACTCAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fumB
Ortholog function: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Shewanella oneidensis MR-1	SO2222	-105	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella putrefaciens CN-32	Sputcn32_1807	-103	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella sp W3-18-1	Sputw3181_2218	-103	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella sp ANA-3	Shewana3_2302	-104	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella sp MR-4	Shewmr4_2124	-104	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella sp MR-7	Shewmr7_2200	-104	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella baltica OS155	Sbal_1918	-103	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella denitrificans OS217	Sden_1912	-131	3.9	AAATGTGATGTAGCCCCAAAAG
Shewanella frigidimarina NCIMB 400	Sfri_2156	-122	4.6	AAATGTGATGTAGCCCAAAAAG
Shewanella amazonensis SB2B	Sama_1688	-144	4.2	ACTTGTGATGTAGCCCAAAGAT
Shewanella loihica PV-4	Shew_1904	-111	3.9	AAATGTGATGTTCCCCTAAAAG
		-73	4.8	TATTGTGAACGGATTCAAAAAA
Shewanella pealeana ATCC 700345	Spea_2038	-162	4.3	AAATGTGATGTTTAACTCAAAC
Shewanella halifaxensis HAW-EB4	Shal_2256	-162	4.3	AAATGTGATGTTTAACTCAAAC
Shewanella piezotolerans WP3	swp_2633	-162	4.4	AAATGTGATGTTTAACTCAAAG
Shewanella sediminis HAW-EB3	Ssed_2358	-194	3.8	AAATGTGATATTCCCCTAAAAG

Position: -212 Score: 5 Sequence: TTACGTGATCTCCATCACCTTT Position: -91 Score: 3.6 Sequence: AAGCTTGACGCATATCAATAAT Locus tag: Shal_2261
	Shal_2261	-212	5	TTACGTGATCTCCATCACCTTT
		-91	3.6	AAGCTTGACGCATATCAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyaA
Ortholog function: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Shewanella oneidensis MR-1	SO2099	-105	4	ATTCTTGATATGCATCAATAAT
Shewanella putrefaciens CN-32	Sputcn32_2088	-167	3.7	AAATTAGATCTGCGTCATGTTA
		-107	4	ATTCTTGATATACATCAATAAT
Shewanella sp W3-18-1	Sputw3181_1924	-167	3.7	AAATTAGATCTGCGTCATGTTA
		-107	4	ATTCTTGATATACATCAATAAT
Shewanella sp ANA-3	Shewana3_1880	-166	3.9	AAATTAGATCTGCATCATGTTA
		-106	4.2	ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-4	Shewmr4_1822	-166	3.9	AAATTAGATCTGCATCATGTTA
		-106	4.2	ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-7	Shewmr7_2155	-166	3.9	AAATTAGATCTGCATCATGTTA
		-106	4.2	ATTCTTGATATGCATCAAGAAT
Shewanella baltica OS155	Sbal_1889	-229	3.9	TTAAGTGACCGATTTCATCCAA
		-167	3.7	AAATTAGATCTACGTCATGTTA
		-107	4.2	ATTCTTGATATACATCAAGAAT
Shewanella frigidimarina NCIMB 400	Sfri_2103	-174	3.8	TTTTGTTAACTTGATCAACATC
		-168	4.4	TAACTTGATCAACATCATAAAT
Shewanella amazonensis SB2B	Sama_1679	-172	3.4	AAGCATGACACACCTCATGTTA
Shewanella loihica PV-4	Shew_1765	-164	3.8	AAACTTGATCCAGCTCATAGCT
		-103	3.7	AATGTTGACATACATCAACATT
Shewanella pealeana ATCC 700345	Spea_2033	-211	4.6	TTACGTGACCACGATCACCTTT
Shewanella halifaxensis HAW-EB4	Shal_2261	-212	5	TTACGTGATCTCCATCACCTTT
Shewanella sediminis HAW-EB3	Ssed_1908	-162	4	AAAGATGATCTAGTTCATATTG

Position: -64 Score: 5.1 Sequence: ATTTGTGACTCTGGTCACAAAT Locus tag: Shal_2329
	Shal_2329	-64	5.1	ATTTGTGACTCTGGTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2871
Ortholog function: arsenate reductase (EC 1.20.4.1)
Shewanella loihica PV-4	Shew_1840	-51	3.8	CCCTGTGACTCGGCTCACCTTT
Shewanella pealeana ATCC 700345	Spea_1970	-64	4.8	CATTGTGACTATGATCACAAAA
Shewanella halifaxensis HAW-EB4	Shal_2329	-64	5.1	ATTTGTGACTCTGGTCACAAAT
Shewanella sediminis HAW-EB3	Ssed_2438	-64	5	TTTTGTGACTTTGCTCACCTTT
Shewanella woodyi ATCC 51908	Swoo_2168	-66	4.2	CCTTGTGACTTCGCTCACCTTT

Position: -196 Score: 3.6 Sequence: TTTTGTGCGTTCTTGCTCACTA Position: -154 Score: 3.9 Sequence: AGTTGTGAAGTGTATCATTGTT Locus tag: Shal_2335
	Shal_2335	-196	3.6	TTTTGTGCGTTCTTGCTCACTA
		-154	3.9	AGTTGTGAAGTGTATCATTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: Probable monothiol glutaredoxin ydhD
Shewanella oneidensis MR-1	SO2880	-157	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella putrefaciens CN-32	Sputcn32_1688	-156	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella sp W3-18-1	Sputw3181_2337	-156	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella sp ANA-3	Shewana3_1640	-157	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella sp MR-4	Shewmr4_1573	-157	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella sp MR-7	Shewmr7_1648	-157	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella baltica OS155	Sbal_1783	-156	4.5	ATTTGTGATGTGAATCATTGTT
Shewanella denitrificans OS217	Sden_1640	-137	4.5	TTTTGTGATGTGCATCATTGTT
Shewanella frigidimarina NCIMB 400	Sfri_1748	-155	4.5	TTTTGTGATGTGAATCATTGTT
Shewanella amazonensis SB2B	Sama_1919	-173	4.2	ATCTGTGATGTGAATCATTCTT
Shewanella loihica PV-4	Shew_1835	-164	4.2	AGTTGTGATGTGAATCATTGTT
Shewanella pealeana ATCC 700345	Spea_1964	-154	3.6	ACTTGTGAAGTGTATCATTGTT
Shewanella halifaxensis HAW-EB4	Shal_2335	-154	3.9	AGTTGTGAAGTGTATCATTGTT
Shewanella piezotolerans WP3	swp_2753	-153	3.6	ACTTGTGAAGTGTATCATTGTT

Position: -93 Score: 3.7 Sequence: AACAATGATACACTTCACAACT Locus tag: Shal_2336
	Shal_2336	-93	3.7	AACAATGATACACTTCACAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodB
Ortholog function: superoxide dismutase [Fe] (EC 1.15.1.1)
Shewanella oneidensis MR-1	SO2881	-91	4.3	AACAATGATTCACATCACAAAT
Shewanella putrefaciens CN-32	Sputcn32_1687	-91	4.3	AACAATGATTCACATCACAAAT
Shewanella sp W3-18-1	Sputw3181_2338	-91	4.3	AACAATGATTCACATCACAAAT
Shewanella sp ANA-3	Shewana3_1639	-91	4.3	AACAATGATTCACATCACAAAT
Shewanella sp MR-4	Shewmr4_1572	-91	4.3	AACAATGATTCACATCACAAAT
Shewanella sp MR-7	Shewmr7_1647	-91	4.3	AACAATGATTCACATCACAAAT
Shewanella baltica OS155	Sbal_1782	-90	4.3	AACAATGATTCACATCACAAAT
Shewanella denitrificans OS217	Sden_1639	-106	4.3	AACAATGATGCACATCACAAAA
Shewanella frigidimarina NCIMB 400	Sfri_1747	-102	4.2	AACAATGATTCACATCACAAAA
Shewanella amazonensis SB2B	Sama_1920	-91	4.2	AAGAATGATTCACATCACAGAT
Shewanella loihica PV-4	Shew_1834	-89	3.8	AACAATGATTCACATCACAACT
Shewanella halifaxensis HAW-EB4	Shal_2336	-93	3.7	AACAATGATACACTTCACAACT

Position: -62 Score: 4.1 Sequence: TATTTTGATATTGATGAAATAA Locus tag: Shal_2355
	Shal_2355	-62	4.1	TATTTTGATATTGATGAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycbW
Ortholog function: probable membrane protein YcbW
Shewanella oneidensis MR-1	SO2591	-63	3.8	TATTTTGATATTGAATAAAATA
		-34	3.8	TGATGTGCCAGTGTTCAAATAG
		-2	3.7	TTATGTTATTATTGCCGCAAAA
Shewanella putrefaciens CN-32	Sputcn32_2193	-63	3.8	TATTTTGATATTGAATAAAATA
		-34	4	TTATGTGCGAGTGTTCAAATAG
		-2	3.8	TTATGTTATTAATGCCGCAAAA
Shewanella sp W3-18-1	Sputw3181_1816	-63	3.8	TATTTTGATATTGAATAAAATA
		-34	3.7	TGATGTGCGAGTGTTCAAATAG
		-2	3.8	TTATGTTATTAATGCCGCAAAA
Shewanella sp ANA-3	Shewana3_1787	-63	3.8	TATTTTGATATTGAATAAAATA
		-34	3.7	TGATGTGCGAGTGTTCAAATAG
		-2	4	TTATGTTATTATTGCCACAAAA
Shewanella sp MR-4	Shewmr4_1682	-63	3.8	TATTTTGATATTGAATAAAATA
		-34	3.8	TGATGTGCCAGTGTTCAAATAG
		-2	4	TTATGTTATTATTGCCACAAAA
Shewanella sp MR-7	Shewmr7_1757	-63	3.8	TATTTTGATATTGAATAAAATA
		-34	3.7	TGATGTGCGAGTGTTCAAATAG
		-2	4	TTATGTTATTATTGCCACAAAA
Shewanella baltica OS155	Sbal_2438	-2	4.2	TTATGTTATTAATGCCACAAAA
Shewanella denitrificans OS217	Sden_1731	-139	4.2	ATTTATGAGTGCGATCAAAATT
Shewanella amazonensis SB2B	Sama_1594	-2	3.9	TTATGTTATTAATGCCACATAC
Shewanella loihica PV-4	Shew_1811	-94	4.6	TGTTGTAATCTATATCATATTT
Shewanella pealeana ATCC 700345	Spea_1944	-62	4.1	TATTTTGATATTGATGAAATTA
Shewanella halifaxensis HAW-EB4	Shal_2355	-62	4.1	TATTTTGATATTGATGAAATAA
Shewanella piezotolerans WP3	swp_2809	-239	3.8	TTTAATAATATAGATCATAAAA
		-143	4.1	TATTTTGATATTGATGAAATTA
		-2	4	ATATGGAATTTCTATCACCTTT
Shewanella sediminis HAW-EB3	Ssed_2474	-94	4.6	TATTGTTATTCAACTCATATTT
Shewanella woodyi ATCC 51908	Swoo_2142	-52	4	TACTTTGATATTGAACAAAATA

Position: -114 Score: 4.5 Sequence: TAATGTGATCTAGCTTTAATTT Locus tag: Shal_2408
	Shal_2408	-114	4.5	TAATGTGATCTAGCTTTAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgR
Ortholog function: Tyrosine degradation transcriptional regulator, LysR family
Shewanella oneidensis MR-1	SO1965	-148	4.4	TACTGTGATCTTCTTATCAATT
Shewanella putrefaciens CN-32	Sputcn32_1672	-148	4.8	TTATGTGATCTTGTTATCAATT
Shewanella sp W3-18-1	Sputw3181_2353	-148	4.8	TTATGTGATCTTGTTATCAATT
Shewanella sp ANA-3	Shewana3_2480	-148	4.6	TAGTGTGATCTTCTTATCAATT
		-92	3.9	ATCTGTTATCTCAATCTAAAAA
Shewanella sp MR-4	Shewmr4_2290	-148	4.6	TAGTGTGATCTTCTTATCAATT
		-92	3.9	ATCTGTTATCTCAATCTAAAAA
Shewanella sp MR-7	Shewmr7_2362	-148	4.6	TAGTGTGATCTTCTTATCAATT
		-92	3.9	ATCTGTTATCTCTATCTAAAAA
Shewanella baltica OS155	Sbal_2614	-148	4.7	TAGTGTGATCTTGTTATCAATT
Shewanella denitrificans OS217	Sden_2161	-146	4.3	CGTTGTGATCTAGCTATCAATT
Shewanella frigidimarina NCIMB 400	Sfri_2325	-135	5.1	ATATGTGATCTAACTTACAATT
Shewanella amazonensis SB2B	Sama_1570	-135	4.7	ATATGTGATCTGGGTATCAATT
Shewanella loihica PV-4	Shew_2153	-115	5.1	TTATGTGATCTAAGTAACAATT
Shewanella pealeana ATCC 700345	Spea_1875	-114	4.3	TAATGTGATCTAGGTTCAATTT
Shewanella halifaxensis HAW-EB4	Shal_2408	-114	4.5	TAATGTGATCTAGCTTTAATTT
Shewanella piezotolerans WP3	swp_2869	-115	4.9	TAATGTGATCTTGTTATCAATT
Shewanella sediminis HAW-EB3	Ssed_2686	-116	4.5	ATTTGTGACATACCTATCAATT
Shewanella woodyi ATCC 51908	Swoo_1933	-116	4.5	ATGTGTGATCTAAGTATCAATT

Position: -63 Score: 3.9 Sequence: AAATTAAAGCTAGATCACATTA Locus tag: Shal_2409
	Shal_2409	-63	3.9	AAATTAAAGCTAGATCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgA
Ortholog function: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Shewanella oneidensis MR-1	SO1963	-92	3.8	AATTGATAAGAAGATCACAGTA
Shewanella putrefaciens CN-32	Sputcn32_1671	-66	4.1	AATTGATAACAAGATCACATAA
Shewanella sp W3-18-1	Sputw3181_2354	-66	4.1	AATTGATAACAAGATCACATAA
Shewanella sp ANA-3	Shewana3_2481	-144	3.9	TTTTTAGATTGAGATAACAGAT
		-88	3.9	AATTGATAAGAAGATCACACTA
Shewanella sp MR-4	Shewmr4_2291	-144	3.9	TTTTTAGATTGAGATAACAGAT
		-88	3.9	AATTGATAAGAAGATCACACTA
Shewanella sp MR-7	Shewmr7_2363	-144	3.9	TTTTTAGATAGAGATAACAGAT
		-88	3.9	AATTGATAAGAAGATCACACTA
Shewanella baltica OS155	Sbal_2615	-144	3.5	TTTTTAGATTGAGATAACGGAT
		-88	4	AATTGATAACAAGATCACACTA
Shewanella denitrificans OS217	Sden_2162	-122	3.6	AATTGATAGCTAGATCACAACG
Shewanella frigidimarina NCIMB 400	Sfri_2326	-126	3.5	TTTGTTGATCTTTACCACTAAA
		-106	5	AATTGTAAGTTAGATCACATAT
Shewanella amazonensis SB2B	Sama_1569	-78	4.5	AATTGATACCCAGATCACATAT
Shewanella loihica PV-4	Shew_2154	-61	5.1	AATTGTTACTTAGATCACATAA
Shewanella pealeana ATCC 700345	Spea_1874	-63	4	AAATTGAACCTAGATCACATTA
Shewanella halifaxensis HAW-EB4	Shal_2409	-63	3.9	AAATTAAAGCTAGATCACATTA
Shewanella piezotolerans WP3	swp_2870	-84	3.5	TTTTTTGCTGTTGTTAGCAACT
		-61	4.1	AATTGATAACAAGATCACATTA

Position: -156 Score: 4.5 Sequence: TAATTTGACTGAGCGCACATTT Locus tag: Shal_2472
	Shal_2472	-156	4.5	TAATTTGACTGAGCGCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_1504
Ortholog function: cytochrome c3
Shewanella frigidimarina NCIMB 400	Sfri_1504	-250	4	TTACATGATATAGCGCACATCT
		-144	3.9	TAATTTGAGATTGTTTATAAAT
Shewanella pealeana ATCC 700345	Spea_1806	-155	4.5	TAATTTGATGGAGCGCACGTTT
Shewanella halifaxensis HAW-EB4	Shal_2472	-156	4.5	TAATTTGACTGAGCGCACATTT
Shewanella piezotolerans WP3	swp_2923	-184	4.3	TAGTTTGATGGAGCGCACGTTT

Position: -86 Score: 4.9 Sequence: ATCTGTGATCTGGATCACCGAT Locus tag: Shal_2493
	Shal_2493	-86	4.9	ATCTGTGATCTGGATCACCGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Shewanella putrefaciens CN-32	Sputcn32_2273	-66	3.8	TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1	Sputw3181_1735	-66	3.8	TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155	Sbal_2519	-66	3.8	TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217	Sden_2187	-274	3.7	TGGATTGATGCAAATTACAAAA
		-186	3.8	AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400	Sfri_2347	-74	4.1	ACGTGTGATGTAACTTACGTTA
		-19	3.7	AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B	Sama_1423	-80	3.7	TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345	Spea_1784	-86	4.4	AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4	Shal_2493	-86	4.9	ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3	swp_2955	-20	4.6	AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3	Ssed_2818	-86	4.2	GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908	Swoo_1833	-87	4.8	ATTTGTGATCTAAATCACGCCT

Position: -85 Score: 4.2 Sequence: CAGAGTGATTCAAGTCACACTT Locus tag: Shal_2568
	Shal_2568	-85	4.2	CAGAGTGATTCAAGTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rarD
Ortholog function: RarD protein
Shewanella pealeana ATCC 700345	Spea_1861	-85	3.9	CAAGGTGATTCAAGTCACACTC
Shewanella halifaxensis HAW-EB4	Shal_2568	-85	4.2	CAGAGTGATTCAAGTCACACTT
Shewanella sediminis HAW-EB3	Ssed_0706	-88	4.8	TAGAGTGATCCAGCTCACATAC
Shewanella woodyi ATCC 51908	Swoo_4258	-44	4.5	CATAGTGATCAATATCACATTC

Position: -312 Score: 4.2 Sequence: AGTTGTTAACTGGATCTCAAAT Locus tag: Shal_2591
	Shal_2591	-312	4.2	AGTTGTTAACTGGATCTCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_1673
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32	Sputcn32_2377	-298	3.8	AGTTGTTAAGTGCCTCCCAAAT
Shewanella sp W3-18-1	Sputw3181_1632	-298	3.8	AGTTGTTAAGTGCCTCCCAAAT
Shewanella frigidimarina NCIMB 400	Sfri_2472	-298	4.1	ACTTGTTATCCAGCTCTCACTT
Shewanella amazonensis SB2B	Sama_1499	-278	3.9	CTATGTTAGCTGTGTCGCAAAT
Shewanella loihica PV-4	Shew_2389	-301	4	AGATGTTAACTAGCTCCCAAAT
Shewanella pealeana ATCC 700345	Spea_1673	-311	4.2	AGTTGTTAACTGGATCTCAAAT
Shewanella halifaxensis HAW-EB4	Shal_2591	-312	4.2	AGTTGTTAACTGGATCTCAAAT
Shewanella piezotolerans WP3	swp_1953	-311	4	AGTTGTTAAGTCGCTCTCAATT
Shewanella sediminis HAW-EB3	Ssed_1709	-311	3.9	AGTTGTTAAGTGGCTCCCAATT
Shewanella woodyi ATCC 51908	Swoo_2882	-310	4.2	AGTTGTTAACTGGATCTCAAAT

Position: -119 Score: 3.9 Sequence: AAGTTAGAATCAGATCACACTT Locus tag: Shal_2671
	Shal_2671	-119	3.9	AAGTTAGAATCAGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Shewanella oneidensis MR-1	SO3089	-131	3.9	AAGTTAGAATCAGATCACACTT
Shewanella putrefaciens CN-32	Sputcn32_2460	-136	3.9	AAGTTAGAATCAGATCACACTT
Shewanella sp W3-18-1	Sputw3181_1548	-136	3.9	AAGTTAGAATCAGATCACACTT
Shewanella sp ANA-3	Shewana3_1460	-135	3.9	AAGTTAGAATCAGATCACACTT
Shewanella sp MR-4	Shewmr4_1407	-135	3.9	AAGTTAGAATCAGATCACACTT
Shewanella sp MR-7	Shewmr7_1472	-135	3.9	AAGTTAGAATCAGATCACACTT
Shewanella baltica OS155	Sbal_2761	-136	3.9	AAGTTAGAATCAGATCACACTT
Shewanella denitrificans OS217	Sden_1529	-109	3.9	AAGTTAGAATCAGATCACACTT
Shewanella frigidimarina NCIMB 400	Sfri_2677	-104	3.9	AAGTTAGAATCAGATCACACTT
Shewanella amazonensis SB2B	Sama_2168	-112	3.6	AAGTTAGAATCGGGTCACACTT
Shewanella loihica PV-4	Shew_2426	-134	3.9	AAGTTAGAATCAGATCACACTT
Shewanella pealeana ATCC 700345	Spea_2599	-116	3.9	AAGTTAGAATCAGATCACACTT
Shewanella halifaxensis HAW-EB4	Shal_2671	-119	3.9	AAGTTAGAATCAGATCACACTT
Shewanella piezotolerans WP3	swp_3140	-122	3.9	AAGTTAGAATCAGATCACACTT
Shewanella sediminis HAW-EB3	Ssed_1628	-151	3.9	AAGTTAGAATCAGATCACACTT
Shewanella woodyi ATCC 51908	Swoo_3027	-138	4.1	AAGTTAGAATCAGATCACATTT

Position: -319 Score: 4.6 Sequence: AAGTGTGATCTGATTCTAACTT Locus tag: Shal_2672
	Shal_2672	-319	4.6	AAGTGTGATCTGATTCTAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3090
Ortholog function: MoxR-like ATPase in aerotolerance operon
Shewanella oneidensis MR-1	SO3090	-165	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella putrefaciens CN-32	Sputcn32_2461	-97	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella sp W3-18-1	Sputw3181_1547	-97	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella sp ANA-3	Shewana3_1459	-160	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella sp MR-4	Shewmr4_1406	-160	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella sp MR-7	Shewmr7_1471	-160	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella baltica OS155	Sbal_2762	-148	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella denitrificans OS217	Sden_1528	-157	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella frigidimarina NCIMB 400	Sfri_2678	-167	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella amazonensis SB2B	Sama_2169	-137	4.2	AAGTGTGACCCGATTCTAACTT
Shewanella loihica PV-4	Shew_2427	-296	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella pealeana ATCC 700345	Spea_2600	-306	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella halifaxensis HAW-EB4	Shal_2672	-319	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella piezotolerans WP3	swp_3141	-97	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella sediminis HAW-EB3	Ssed_1627	-316	4.6	AAGTGTGATCTGATTCTAACTT
Shewanella woodyi ATCC 51908	Swoo_3028	-306	4.8	AAATGTGATCTGATTCTAACTT

Position: -74 Score: 3.7 Sequence: ATTTGAGCCTTGGCTCATAAAT Locus tag: Shal_2680
	Shal_2680	-74	3.7	ATTTGAGCCTTGGCTCATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
Shewanella putrefaciens CN-32	Sputcn32_2469	-60	4.2	AGGTTAGATTTTGATCACATTT
		-30	3.8	TAATGGGTTCTTGCTCAAACAT
Shewanella sp W3-18-1	Sputw3181_1539	-60	4.4	ATGTTAGATTTTGATCACATTT
		-30	3.8	TAATGGGTTCTTGCTCAAACAT
Shewanella sp ANA-3	Shewana3_1451	-73	3.8	TAATGGGTTCTTGCTCAAACAT
Shewanella sp MR-4	Shewmr4_1398	-73	3.8	TAATGGGTTCTTGCTCAAACAT
Shewanella sp MR-7	Shewmr7_1463	-73	3.8	TAATGGGTTCTTGCTCAAACAT
Shewanella baltica OS155	Sbal_2770	-102	3.8	AGGTTAGATTTTAATCACACTT
Shewanella frigidimarina NCIMB 400	Sfri_2686	-64	4.5	AAGTGTGAACTAGATCGAACTT
Shewanella amazonensis SB2B	Sama_2177	-77	3.8	AATTGGGATCCGACCCAAACTT
Shewanella pealeana ATCC 700345	Spea_2608	-104	3.8	TGGTTAGATCTTCATCACATTC
Shewanella halifaxensis HAW-EB4	Shal_2680	-74	3.7	ATTTGAGCCTTGGCTCATAAAT
Shewanella piezotolerans WP3	swp_3151	-72	3.7	ATTATTGAGCTATAGCTCAAAT
		-70	4.3	TATTGAGCTATAGCTCAAATAT
Shewanella sediminis HAW-EB3	Ssed_1619	-72	3.9	TATTGAGCTTCCTATCAAACAT
Shewanella woodyi ATCC 51908	Swoo_3036	-86	4.4	GTATATGACCCAGTTCACATTT

Position: -235 Score: 5.3 Sequence: AAGTGTGATATCGCTCACAAAA Locus tag: Shal_2707
	Shal_2707	-235	5.3	AAGTGTGATATCGCTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3719
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32	Sputcn32_3037	-207	4.5	TTTTGTGAGCAAGCTAAAATTA
		-135	3.9	AATTGATATTTAAATCACCTAG
Shewanella sp W3-18-1	Sputw3181_0908	-207	4.5	TTTTGTGAGCAAGCTAAAATTA
		-135	3.9	AATTGATATTTAAATCACCTAG
Shewanella sp ANA-3	Shewana3_0872	-317	4.1	TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-4	Shewmr4_3065	-320	4.1	TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-7	Shewmr7_0907	-318	4.1	TTTTGTGAGCAAGCTAGAATTA
Shewanella baltica OS155	Sbal_3399	-316	4.4	TTTTGTGAGACAGTTAAAACTA
Shewanella frigidimarina NCIMB 400	Sfri_0814	-144	4	TTTTGCGCGGCAGTTCACATTG
		-83	4.4	TGACGTGATCTGTTTCATGTAA
Shewanella amazonensis SB2B	Sama_2881	-130	3.9	AAATGTGAGGCAGTTGGAATTT
Shewanella loihica PV-4	Shew_0679	-126	4.1	ATTTGTGACATCGGTAAACTTA
Shewanella pealeana ATCC 700345	Spea_0674	-140	4	TTTTGTGAGGTAGGTAAAGCTA
		-98	3.8	CCTCGTGATCTGTTTCATGTAA
Shewanella halifaxensis HAW-EB4	Shal_3524	-139	4	TTTTGTGAGGTAGGTAAAGCTA
		-97	3.8	CCTCGTGATCTGTTTCATGTAA
Shewanella halifaxensis HAW-EB4	Shal_2707	-235	5.3	AAGTGTGATATCGCTCACAAAA
Shewanella piezotolerans WP3	swp_4045	-124	3.9	TTTTGTGAGGTAGGTAAAGGTA
		-77	3.7	TGATCTGATTCAATTAAAAATA
Shewanella sediminis HAW-EB3	Ssed_3789	-120	4.9	ATTTGTGATGCAGGTAAAATTT
		-78	4	TGCCGTGATCTGTTTCATGTAA
Shewanella woodyi ATCC 51908	Swoo_0794	-123	4.3	AATTGTGATATAGGTAAGAGTA

Position: -250 Score: 4.5 Sequence: TAAAGAGATCGAGATCACACTA Position: -140 Score: 3.8 Sequence: TTAAGAGATGTTTATCGCAATC Position: -111 Score: 3.7 Sequence: TTTCGGGACGGTTATCACAACT Locus tag: Shal_2750
	Shal_2750	-250	4.5	TAAAGAGATCGAGATCACACTA
		-140	3.8	TTAAGAGATGTTTATCGCAATC
		-111	3.7	TTTCGGGACGGTTATCACAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nadC
Ortholog function: di-and tricarboxylate transporter
Shewanella putrefaciens CN-32	Sputcn32_3393	-262	4.5	AAGCGTGATTAGTGTCACAGTT
		-154	4.1	TTTGGTGATTTTTGTCGCGTAA
		-125	3.9	TTTTGCGATTTTTATCGACAAA
		-92	3.8	TGATGTGATAAAGCTACAAAAT
		-57	4.4	ATGTGTGATCTATGCCATAAAT
Shewanella sp W3-18-1	Sputw3181_0550	-262	4.8	AAGTGTGATTAGTGTCACAGTT
		-154	4.1	TTTGGTGATTTTTGTCGCGTAA
		-125	3.9	TTTTGCGATTTTTATCGACAAA
		-92	3.8	TGATGTGATAAAGCTACAAAAT
		-57	3.8	GTGTGTGATCTATGCCATAAAT
Shewanella sp ANA-3	Shewana3_0451	-262	4.4	AAGTTTGACATGGGTCACAGTT
Shewanella baltica OS155	Sbal_0427	-57	3.8	AAGTGTGATCTATGCCCTAAAT
Shewanella pealeana ATCC 700345	Spea_2663	-262	4.3	TAAAGTGATCGCGATCACACCG
		-152	4.4	AATAGTGACAAACATCACATCA
Shewanella halifaxensis HAW-EB4	Shal_2750	-250	4.5	TAAAGAGATCGAGATCACACTA
		-140	3.8	TTAAGAGATGTTTATCGCAATC
Shewanella piezotolerans WP3	swp_3241	-123	3.8	TTATGCGCCCTTCATCACCCTA
Shewanella sediminis HAW-EB3	Ssed_1560	-127	3.9	AAAATAGATCTACTTCACCTAT

Position: -279 Score: 4.7 Sequence: AAGTGTGATCTGTGTCAAGTTT Position: -158 Score: 4.7 Sequence: AGTTGAGATATTTATCACATAA Locus tag: Shal_2777
	Shal_2777	-279	4.7	AAGTGTGATCTGTGTCAAGTTT
		-158	4.7	AGTTGAGATATTTATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Shewanella oneidensis MR-1	SO1783	-153	4	CATAGAGATTTTTGTCACATAA
Shewanella putrefaciens CN-32	Sputcn32_1480	-155	4.6	CATTGGGATTTTTATCACATAA
Shewanella sp W3-18-1	Sputw3181_2621	-155	4.6	CATTGGGATTTTTATCACATAA
Shewanella sp ANA-3	Shewana3_2671	-276	5	AAGTGTGATCTTGTTCTCACTT
		-153	4.4	CATTGAGATTTTTGTCACATAA
Shewanella sp MR-4	Shewmr4_2505	-276	5	AAGTGTGATCTTGTTCTCACTT
		-153	4.4	CATTGAGATTTTTGTCACATAA
Shewanella sp MR-7	Shewmr7_2573	-276	5	AAGTGTGATCTTGTTCTCACTT
		-153	4.4	CATTGAGATTTTTGTCACATAA
Shewanella baltica OS155	Sbal_1594	-276	5	AAGCGTGATGTTGATCACGTTT
Shewanella denitrificans OS217	Sden_2415	-148	3.9	ATCTGCGGTATTTATCACATAA
Shewanella amazonensis SB2B	Sama_1214	-228	3.8	AAGTGTGATGAGTGTCACGCCG
Shewanella loihica PV-4	Shew_2518	-245	5.2	ATATGTGATCTAGATCACGTTG
		-155	4.2	GATTGAGATATCTGTCACATAA
Shewanella pealeana ATCC 700345	Spea_2691	-247	5.5	TTATGTGATGCGTATCACACTT
		-158	4.2	AGTTGAGAGTTTTGTCACATAA
Shewanella halifaxensis HAW-EB4	Shal_2777	-279	4.7	AAGTGTGATCTGTGTCAAGTTT
		-158	4.7	AGTTGAGATATTTATCACATAA
Shewanella piezotolerans WP3	swp_3271	-280	4.6	AAGCGTGATCTACGTCACACTG
		-157	4.2	AGTTGAGAGATTTGTCACATAA
Shewanella sediminis HAW-EB3	Ssed_1531	-275	4.9	AAGTGTGATCTTGGTCACGCTA
		-158	4.3	AGTTGAGACTTTTGTCACATAA
Shewanella woodyi ATCC 51908	Swoo_3123	-272	4.7	AATCGTGACTTATATCACTTAA
		-157	4.2	AGTTGGGACTTTTGTCACATAA

Position: -305 Score: 4.5 Sequence: TTATGTGATAAATATCTCAACT Position: -184 Score: 4.6 Sequence: AAACTTGACACAGATCACACTT Locus tag: Shal_2778
	Shal_2778	-305	4.5	TTATGTGATAAATATCTCAACT
		-184	4.6	AAACTTGACACAGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrD
Ortholog function: periplasmic decaheme cytochrome c, MtrD
Shewanella oneidensis MR-1	SO1782	-339	3.8	TTATGTGACAAAAATCTCTATG
Shewanella sp ANA-3	Shewana3_2672	-295	4.4	TTATGTGACAAAAATCTCAATG
		-172	4.3	AAGTGAGAACAAGATCACACTT
Shewanella sp MR-4	Shewmr4_2506	-295	4.4	TTATGTGACAAAAATCTCAATG
		-172	4.3	AAGTGAGAACAAGATCACACTT
Shewanella sp MR-7	Shewmr7_2574	-295	4.4	TTATGTGACAAAAATCTCAATG
		-172	4.3	AAGTGAGAACAAGATCACACTT
Shewanella baltica OS155	Sbal_1593	-304	3.8	TTATGTGACAAAAATACCAATG
		-181	4.8	AAACGTGATCAACATCACGCTT
Shewanella amazonensis SB2B	Sama_1213	-189	3.9	CGGCGTGACACTCATCACACTT
Shewanella loihica PV-4	Shew_2519	-260	4.5	TTATGTGACAGATATCTCAATC
		-170	5.3	CAACGTGATCTAGATCACATAT
Shewanella pealeana ATCC 700345	Spea_2692	-286	4.1	TTATGTGACAAAACTCTCAACT
		-197	5.4	AAGTGTGATACGCATCACATAA
Shewanella halifaxensis HAW-EB4	Shal_2778	-305	4.5	TTATGTGATAAATATCTCAACT
		-184	4.6	AAACTTGACACAGATCACACTT
Shewanella piezotolerans WP3	swp_3272	-308	4.2	TTATGTGACAAATCTCTCAACT
		-185	4.6	CAGTGTGACGTAGATCACGCTT
Shewanella sediminis HAW-EB3	Ssed_1530	-291	4	TTATGTGACAAAAGTCTCAACT
		-174	4.8	TAGCGTGACCAAGATCACACTT

Position: -264 Score: 4 Sequence: TTTTATTACATTTATCACGTAT Locus tag: Shal_2784
	Shal_2784	-264	4	TTTTATTACATTTATCACGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1	SO1778	-248	3.7	TGTTGTTTTTTTGCTCTCAATT
		-190	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella putrefaciens CN-32	Sputcn32_1478	-190	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella sp W3-18-1	Sputw3181_2623	-190	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella sp ANA-3	Shewana3_2676	-189	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-4	Shewmr4_2510	-189	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-7	Shewmr7_2578	-189	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella baltica OS155	Sbal_1589	-190	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella frigidimarina NCIMB 400	Sfri_2637	-164	3.8	TAGGCTGATCATCATCACACAA
Shewanella amazonensis SB2B	Sama_1208	-230	3.9	TTTTTTGATCTGAAACAGCTTT
		-178	3.6	TAGCCGGATCCAGTTCACACAT
Shewanella loihica PV-4	Shew_2525	-179	3.6	TAGAAAGATCTCGGTCACACAT
Shewanella halifaxensis HAW-EB4	Shal_2784	-264	4	TTTTATTACATTTATCACGTAT
Shewanella sediminis HAW-EB3	Ssed_1525	-191	4	TAGGCTGATCTAGGTCACACAT
Shewanella woodyi ATCC 51908	Swoo_3125	-288	3.7	ATGAGTTACAACTTTCACACAT

Position: -7 Score: 3.9 Sequence: AGCTATTATGAAGATCACAAAA Locus tag: Shal_2785
	Shal_2785	-7	3.9	AGCTATTATGAAGATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrA
Ortholog function: periplasmic decaheme cytochrome c, MtrA
Shewanella oneidensis MR-1	SO1777	-248	3.7	TGTTGTTTTTTTGCTCTCAATT
		-190	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella putrefaciens CN-32	Sputcn32_1477	-190	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella sp W3-18-1	Sputw3181_2624	-190	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella sp ANA-3	Shewana3_2677	-189	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-4	Shewmr4_2511	-189	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-7	Shewmr7_2579	-189	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella baltica OS155	Sbal_1588	-190	3.5	TAGAAAGATCCAAGTCACACAT
Shewanella frigidimarina NCIMB 400	Sfri_2638	-164	3.8	TAGGCTGATCATCATCACACAA
Shewanella amazonensis SB2B	Sama_1207	-230	3.9	TTTTTTGATCTGAAACAGCTTT
		-178	3.6	TAGCCGGATCCAGTTCACACAT
Shewanella loihica PV-4	Shew_2526	-179	3.6	TAGAAAGATCTCGGTCACACAT
Shewanella halifaxensis HAW-EB4	Shal_2785	-264	4	TTTTATTACATTTATCACGTAT
Shewanella sediminis HAW-EB3	Ssed_1524	-191	4	TAGGCTGATCTAGGTCACACAT
Shewanella woodyi ATCC 51908	Swoo_3126	-288	3.7	ATGAGTTACAACTTTCACACAT

Position: -52 Score: 3.5 Sequence: TTGTTTGAAATTTTGCAGATAT Locus tag: Shal_2812
	Shal_2812	-52	3.5	TTGTTTGAAATTTTGCAGATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hydC
Ortholog function: Ni,Fe-hydrogenase I cytochrome b subunit
Shewanella oneidensis MR-1	SO2097	-105	4	ATTCTTGATATGCATCAATAAT
Shewanella putrefaciens CN-32	Sputcn32_2090	-167	3.7	AAATTAGATCTGCGTCATGTTA
		-107	4	ATTCTTGATATACATCAATAAT
Shewanella sp W3-18-1	Sputw3181_1922	-167	3.7	AAATTAGATCTGCGTCATGTTA
		-107	4	ATTCTTGATATACATCAATAAT
Shewanella sp ANA-3	Shewana3_1878	-166	3.9	AAATTAGATCTGCATCATGTTA
		-106	4.2	ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-4	Shewmr4_1820	-166	3.9	AAATTAGATCTGCATCATGTTA
		-106	4.2	ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-7	Shewmr7_2157	-166	3.9	AAATTAGATCTGCATCATGTTA
		-106	4.2	ATTCTTGATATGCATCAAGAAT
Shewanella baltica OS155	Sbal_1887	-229	3.9	TTAAGTGACCGATTTCATCCAA
		-167	3.7	AAATTAGATCTACGTCATGTTA
		-107	4.2	ATTCTTGATATACATCAAGAAT
Shewanella frigidimarina NCIMB 400	Sfri_2105	-174	3.8	TTTTGTTAACTTGATCAACATC
		-168	4.4	TAACTTGATCAACATCATAAAT
Shewanella amazonensis SB2B	Sama_1677	-172	3.4	AAGCATGACACACCTCATGTTA
Shewanella loihica PV-4	Shew_1763	-164	3.8	AAACTTGATCCAGCTCATAGCT
		-103	3.7	AATGTTGACATACATCAACATT
Shewanella pealeana ATCC 700345	Spea_2031	-211	4.6	TTACGTGACCACGATCACCTTT
Shewanella halifaxensis HAW-EB4	Shal_2263	-212	5	TTACGTGATCTCCATCACCTTT
Shewanella sediminis HAW-EB3	Ssed_1906	-162	4	AAAGATGATCTAGTTCATATTG

Position: -21 Score: 4.3 Sequence: AAAAGTGAGCCGGAGCAAATAA Locus tag: Shal_2873
	Shal_2873	-21	4.3	AAAAGTGAGCCGGAGCAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmsB
Ortholog function: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Shewanella amazonensis SB2B	Sama_1380	-67	4.1	AACCGCGACCGCCATCACATTT
Shewanella loihica PV-4	Shew_1672	-75	4.2	TTATTTGAACATGATCACGCTT
Shewanella pealeana ATCC 700345	Spea_2778	-138	4.5	AATATTGAGCAAGATCACATTT
Shewanella halifaxensis HAW-EB4	Shal_2873	-138	4.2	AATGTTGAGCAAGATCACACTT
Shewanella piezotolerans WP3	swp_3382	-175	4.4	AATGTTGAGCGAGATCACATTT
Shewanella sediminis HAW-EB3	Ssed_1478	-92	4.3	TTAATTGAGCAAGATCACACTT

Position: -138 Score: 4.2 Sequence: AATGTTGAGCAAGATCACACTT Locus tag: Shal_2878
	Shal_2878	-138	4.2	AATGTTGAGCAAGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atoB
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shewanella amazonensis SB2B	Sama_1375	-67	4.1	AACCGCGACCGCCATCACATTT
Shewanella loihica PV-4	Shew_1667	-75	4.2	TTATTTGAACATGATCACGCTT
Shewanella pealeana ATCC 700345	Spea_2783	-138	4.5	AATATTGAGCAAGATCACATTT
Shewanella halifaxensis HAW-EB4	Shal_2878	-138	4.2	AATGTTGAGCAAGATCACACTT
Shewanella piezotolerans WP3	swp_3387	-175	4.4	AATGTTGAGCGAGATCACATTT
Shewanella sediminis HAW-EB3	Ssed_1473	-92	4.3	TTAATTGAGCAAGATCACACTT

Position: -161 Score: 5.1 Sequence: AAATGTGATCTTCATCGCCTTT Position: -111 Score: 4.8 Sequence: ATTTTTGATTCAGGTCAAATTT Locus tag: Shal_2887
	Shal_2887	-161	5.1	AAATGTGATCTTCATCGCCTTT
		-111	4.8	ATTTTTGATTCAGGTCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W precursor
Shewanella oneidensis MR-1	SO1673	-161	4.4	TAGCGTGATTTGGATCTCAATG
		-110	4.4	AATTTTGATTTGGATCAATAAT
Shewanella putrefaciens CN-32	Sputcn32_1392	-211	4.2	ATAAATGCTGCGTATCACATAA
		-158	4	TTTCGTGATTAGGATCTCAAGT
Shewanella sp W3-18-1	Sputw3181_2709	-211	4.2	ATAAATGCTGCGTATCACATAA
Shewanella sp ANA-3	Shewana3_2775	-107	3.8	AATCTTGATTTGGATCAATAAG
Shewanella baltica OS155	Sbal_1490	-158	4	TTTCGTGATTCAGCTCCCATGT
Shewanella denitrificans OS217	Sden_2589	-157	4.2	TTTTGTGAATTAGATCAAGACT
Shewanella frigidimarina NCIMB 400	Sfri_1334	-232	3.9	TCGCTTGATCAACCTCACAAAA
		-170	3.9	TTTTGTGATCCAAATCAACAGC
Shewanella amazonensis SB2B	Sama_1371	-56	4	AATTGTTACGGACGTAACAGAA
Shewanella pealeana ATCC 700345	Spea_2787	-159	4.4	TATTGTGATCTAGATCCTTTTA
Shewanella halifaxensis HAW-EB4	Shal_2887	-161	5.1	AAATGTGATCTTCATCGCCTTT
		-111	4.8	ATTTTTGATTCAGGTCAAATTT
Shewanella piezotolerans WP3	swp_3395	-214	4	TTGCGTGTTGTATGTCACCAAA
		-161	4.4	AAATGTGATCGCGATCACTGCT
Shewanella sediminis HAW-EB3	Ssed_1469	-158	4.5	TTTTGTGAGCTTGGTCATGTAT
		-108	3.7	TTAATTGATCTGGATCAATAAG
Shewanella woodyi ATCC 51908	Swoo_3207	-211	4.3	AATTATGACGTCGCTCACTAAA
		-158	4.5	AAGTGTGAGTTCGATCAAGTAT
		-108	3.9	TTTATTGATTTGGATCAATAAA

Position: -284 Score: 3.6 Sequence: TATTTGGCTGAGGATCAAATAT Locus tag: Shal_2945
	Shal_2945	-284	3.6	TATTTGGCTGAGGATCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfB
Ortholog function: electron transfer flavoprotein, beta subunit
Shewanella denitrificans OS217	Sden_2539	-175	4.4	TCATATGATTTTCATCACACTT
Shewanella frigidimarina NCIMB 400	Sfri_2748	-153	4.2	TAGTTTGATTGCCACCACAATA
Shewanella pealeana ATCC 700345	Spea_2855	-283	4.1	TATTTGGATAAGGATCAAATAT
Shewanella piezotolerans WP3	swp_3472	-276	3.7	TATTTCAATAAGGATCAAATAT
Shewanella woodyi ATCC 51908	Swoo_3236	-214	4.5	ATTTGTGAATGTACTCATATAT

Position: -92 Score: 3.7 Sequence: TAATATGAAAAAAAGCACAAAC Locus tag: Shal_2982
	Shal_2982	-92	3.7	TAATATGAAAAAAAGCACAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: map
Ortholog function: methionine aminopeptidase (EC 3.4.11.18)
Shewanella pealeana ATCC 700345	Spea_2886	-104	4.2	TAATTTGAAAAAAAGCACAAAT
Shewanella halifaxensis HAW-EB4	Shal_2982	-92	3.7	TAATATGAAAAAAAGCACAAAC
Shewanella piezotolerans WP3	swp_3524	-93	4.2	TATTTTGAAAAAAAGCACAAAT
Shewanella sediminis HAW-EB3	Ssed_3162	-91	3.9	TATTGAGAGAGCAAACACAAAT

Position: -181 Score: 4.6 Sequence: TTCCTTGATCTAGATCACACTA Locus tag: Shal_2994
	Shal_2994	-181	4.6	TTCCTTGATCTAGATCACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1613
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO1613	-75	4	TTCCTTGATTTAGCTCACACTC
Shewanella putrefaciens CN-32	Sputcn32_1334	-142	4.1	TTCCTTGATTTAGATCACACTC
Shewanella sp W3-18-1	Sputw3181_2769	-142	4.1	TTCCTTGATTTAGATCACACTC
Shewanella sp ANA-3	Shewana3_2830	-136	4.1	TTCCTTGATTTAGATCACACTC
Shewanella sp MR-4	Shewmr4_2656	-136	4.1	TTCCTTGATTTAGATCACACTC
Shewanella sp MR-7	Shewmr7_2723	-136	4.1	TTCCTTGATTTAGATCACACTC
Shewanella baltica OS155	Sbal_1436	-138	4.1	TTCCTTGACTTAGCTCACACTT
Shewanella amazonensis SB2B	Sama_1125	-126	4.5	TTCCTTGATCCAGATCACACAT
Shewanella halifaxensis HAW-EB4	Shal_2994	-181	4.6	TTCCTTGATCTAGATCACACTA
Shewanella piezotolerans WP3	swp_3538	-271	4.4	TTCCTTGATCGAGATCACACAA

Position: -265 Score: 4.2 Sequence: ATGTTTGAGCTAGATCACTCTT Locus tag: Shal_3007
	Shal_3007	-265	4.2	ATGTTTGAGCTAGATCACTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1603
Ortholog function: putative transcriptional regulator, inferred for PFA pathway
Shewanella pealeana ATCC 700345	Spea_2906	-269	3.9	AAGCAAGATTTAGATCACACTT
Shewanella halifaxensis HAW-EB4	Shal_3007	-265	4.2	ATGTTTGAGCTAGATCACTCTT
Shewanella piezotolerans WP3	swp_3549	-268	4.5	ATATTAGATCTAAATCACACTT
		-238	3.9	TAACGTTAGTTACCACACAAAA
Shewanella sediminis HAW-EB3	Ssed_3201	-267	4.6	TTATTTGACCTGGATCACGCTT
Shewanella woodyi ATCC 51908	Swoo_1424	-228	4	AAATGAAACATCTATCACACAT

Position: -193 Score: 5.2 Sequence: ATTTGTGACGTTGATCACCTAT Locus tag: Shal_3021
	Shal_3021	-193	5.2	ATTTGTGACGTTGATCACCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1482
Ortholog function: tonB-dependent receptor, putative
Shewanella frigidimarina NCIMB 400	Sfri_2440	-90	4	TTTTTTGCCACATATAACAAAA
Shewanella pealeana ATCC 700345	Spea_2930	-193	5.2	TTTTGTGATCTTCGTCACCTAT
Shewanella halifaxensis HAW-EB4	Shal_3021	-193	5.2	ATTTGTGACGTTGATCACCTAT
Shewanella piezotolerans WP3	swp_3568	-184	4.4	AACTGTGATCTCTATCACCGAC

Position: -114 Score: 4.4 Sequence: AATAGTGAGCAATCTCACGTTT Locus tag: Shal_3068
	Shal_3068	-114	4.4	AATAGTGAGCAATCTCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1539
Ortholog function: Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Shewanella putrefaciens CN-32	Sputcn32_1287	-127	4.5	AATAGTGAGCGATATCACGATT
Shewanella sp W3-18-1	Sputw3181_2819	-127	4.5	AATAGTGAGCGATATCACGATT
Shewanella sp ANA-3	Shewana3_2889	-127	4.5	AATAGTGAGCAATATCACGATT
Shewanella sp MR-4	Shewmr4_2719	-127	4.5	AATAGTGAGCAATATCACGATT
Shewanella sp MR-7	Shewmr7_2790	-127	4.5	AATAGTGAGCAATATCACGATT
Shewanella baltica OS155	Sbal_1369	-128	4.5	AATAGTGAGCAATATCACGATT
Shewanella frigidimarina NCIMB 400	Sfri_2778	-313	4.7	AATAGTGAGTATTATCACATTA
Shewanella amazonensis SB2B	Sama_2422	-183	4.7	TTATGTGATTTATGTCTCGATT
Shewanella loihica PV-4	Shew_2759	-171	4.4	AATAGTGAGCAATCTCACGTTT
Shewanella pealeana ATCC 700345	Spea_2979	-113	4.3	AAGAGTGAGCGATCTCACGTTT
Shewanella halifaxensis HAW-EB4	Shal_3068	-114	4.4	AATAGTGAGCAATCTCACGTTT
Shewanella piezotolerans WP3	swp_3605	-144	4.2	AAAGGTGAGCAATCTCACGTTT
Shewanella sediminis HAW-EB3	Ssed_3317	-103	4.8	AATAGTGAGCAATCTCACATTT
Shewanella woodyi ATCC 51908	Swoo_3465	-159	4.4	AATAGTGAGCAGTCTCACGTTT

Position: -149 Score: 4.4 Sequence: AAACGTGAGATTGCTCACTATT Locus tag: Shal_3069
	Shal_3069	-149	4.4	AAACGTGAGATTGCTCACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Shewanella oneidensis MR-1	SO1538	-149	4.7	ATTCGTGATATTGCTCACTATT
Shewanella putrefaciens CN-32	Sputcn32_1286	-148	4.7	AATCGTGATATCGCTCACTATT
Shewanella sp W3-18-1	Sputw3181_2820	-148	4.7	AATCGTGATATCGCTCACTATT
Shewanella sp ANA-3	Shewana3_2890	-149	4.7	AATCGTGATATTGCTCACTATT
Shewanella sp MR-4	Shewmr4_2720	-149	4.7	AATCGTGATATTGCTCACTATT
Shewanella sp MR-7	Shewmr7_2791	-149	4.7	AATCGTGATATTGCTCACTATT
Shewanella baltica OS155	Sbal_1368	-149	4.7	AATCGTGATATTGCTCACTATT
Shewanella denitrificans OS217	Sden_2561	-143	3.8	AAAAGGGATATTTCTCACTAAT
Shewanella frigidimarina NCIMB 400	Sfri_2779	-148	4.7	TAATGTGATAATACTCACTATT
Shewanella amazonensis SB2B	Sama_2423	-89	4.5	AATCGAGACATAAATCACATAA
Shewanella loihica PV-4	Shew_2760	-150	4.4	AAACGTGAGATTGCTCACTATT
Shewanella pealeana ATCC 700345	Spea_2980	-146	4.2	AAACGTGAGATCGCTCACTCTT
Shewanella halifaxensis HAW-EB4	Shal_3069	-149	4.4	AAACGTGAGATTGCTCACTATT
Shewanella piezotolerans WP3	swp_3606	-293	4.6	AAACGTGAGATTGCTCACCTTT
Shewanella sediminis HAW-EB3	Ssed_3318	-151	4.7	AAATGTGAGATTGCTCACTATT
Shewanella woodyi ATCC 51908	Swoo_3466	-148	4.3	AAACGTGAGACTGCTCACTATT

Position: -300 Score: 4.5 Sequence: TTACGTGACACGGATCACAGAG Position: -265 Score: 4.5 Sequence: AACTGTGATCAGTCTCACTAAT Locus tag: Shal_3083
	Shal_3083	-300	4.5	TTACGTGACACGGATCACAGAG
		-265	4.5	AACTGTGATCAGTCTCACTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lldP
Ortholog function: L-lactate permease
Shewanella oneidensis MR-1	SO1522	-262	4.6	TTAAGTGACACCGATCACAGTT
		-180	4.2	CAAAATGATCTAGATCATATAA
Shewanella sp MR-4	Shewmr4_2734	-263	4.1	TCGAGTGACATAGATCACAGTT
		-181	4.2	CAAAATGATCTAGATCATATTA
Shewanella sp MR-7	Shewmr7_2807	-263	4.1	TCGAGTGACATAGATCACAGTT
		-181	4.2	CAAAATGATCTAGATCATATTA
Shewanella frigidimarina NCIMB 400	Sfri_2793	-298	4.3	TCTAGTGAGCCCCTTCACATTA
		-197	3.7	AAACGTGACCTCAAACACGCAC
Shewanella pealeana ATCC 700345	Spea_2994	-276	4	TTAGGTGACACAGGTCACACCA
		-241	4.1	AACCGTGACAGATCTCACAATC
Shewanella halifaxensis HAW-EB4	Shal_3083	-300	4.5	TTACGTGACACGGATCACAGAG
		-265	4.5	AACTGTGATCAGTCTCACTAAT

Position: -183 Score: 4.5 Sequence: AACTGTGAATTGCTTCACAAAC Locus tag: Shal_3127
	Shal_3127	-183	4.5	AACTGTGAATTGCTTCACAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: psrA
Ortholog function: polysulfide reductase, subunit A
Shewanella sp ANA-3	Shewana3_3619	-278	3.8	TCTATTGATCCTATTCACGAAT
Shewanella sp MR-4	Shewmr4_3444	-273	4	CTTATTGATCTTATTCACGATT
Shewanella sp MR-7	Shewmr7_0507	-273	4	CTTATTGATCTTATTCACGATT
Shewanella frigidimarina NCIMB 400	Sfri_1999	-181	3.8	AACCGTGACATCAATCAAATCA
Shewanella pealeana ATCC 700345	Spea_3039	-182	4.4	AACTGTGAATTGCCTCACAAAC
Shewanella halifaxensis HAW-EB4	Shal_3127	-183	4.5	AACTGTGAATTGCTTCACAAAC
Shewanella piezotolerans WP3	swp_1238	-191	4.4	AACTGTGAAACAACTCACAAAG
Shewanella sediminis HAW-EB3	Ssed_4047	-228	3.9	ACATTAGATAAATATCACATTT

Position: -138 Score: 4.8 Sequence: AAGTGTGATCTAAATCTAATTA Locus tag: Shal_3135
	Shal_3135	-138	4.8	AAGTGTGATCTAAATCTAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoA
Ortholog function: thymidine phosphorylase (EC 2.4.2.4)
Shewanella oneidensis MR-1	SO1218	-135	3.9	AAGTGTGACCTAAATCTAGTTG
Shewanella putrefaciens CN-32	Sputcn32_2821	-136	3.7	AAGTGTGACCTAAATCTATTTG
Shewanella sp W3-18-1	Sputw3181_1190	-136	3.7	AAGTGTGACCTAAATCTATTTG
Shewanella sp ANA-3	Shewana3_1042	-135	3.9	AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-4	Shewmr4_1038	-135	3.9	AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-7	Shewmr7_1103	-135	3.9	AAGTGTGACCTAAATCTAGTTG
Shewanella baltica OS155	Sbal_3226	-136	3.7	AAGTGTGACCTAAATCTATTTG
Shewanella amazonensis SB2B	Sama_0974	-135	3.9	ATTTGTGATCCGCGTCGAAACG
Shewanella loihica PV-4	Shew_2814	-133	4	AAGTGTGATCTAAATCTATTTG
Shewanella pealeana ATCC 700345	Spea_3047	-138	4.8	AAGTGTGATCTAAATCTAATTA
Shewanella halifaxensis HAW-EB4	Shal_3135	-138	4.8	AAGTGTGATCTAAATCTAATTA
Shewanella piezotolerans WP3	swp_1230	-139	4.8	AAGTGTGATCTAAATCTAATTA
Shewanella sediminis HAW-EB3	Ssed_3377	-134	4	AAGTGTGATCTAAATCTATTTG
Shewanella woodyi ATCC 51908	Swoo_3548	-157	4.2	AAGTGTGATCTAAATCTAGTTG

Position: -268 Score: 4.5 Sequence: TTCCGTGATCAATATCACCTTA Locus tag: Shal_3174
	Shal_3174	-268	4.5	TTCCGTGATCAATATCACCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3089
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32	Sputcn32_0956	-213	4.6	TTATGTGAAGCAGATCGCCATT
Shewanella sp W3-18-1	Sputw3181_3220	-213	4.6	TTATGTGAAGCAGATCGCCATT
Shewanella baltica OS155	Sbal_0942	-213	4.6	TTATGTGAAGCAGATCGCCATT
Shewanella frigidimarina NCIMB 400	Sfri_0964	-141	4.5	TTTTGTGAATTAAAGCAAATAA
Shewanella pealeana ATCC 700345	Spea_3089	-256	4.3	TTTTGCGATTCAGATCACTTTG
Shewanella halifaxensis HAW-EB4	Shal_3174	-268	4.5	TTCCGTGATCAATATCACCTTA
		-40	3.7	ATTTGAGATTCTATTTACAACT
Shewanella sediminis HAW-EB3	Ssed_3418	-227	3.8	TTTTGTACTGTTTTTAAAATAA
Shewanella sediminis HAW-EB3	Ssed_3419	-227	3.9	ATTTCAGATATAAATCAAAAAA

Position: -127 Score: 3.7 Sequence: CAGCGTGATTACAGTCGCACTT Locus tag: Shal_3187
	Shal_3187	-127	3.7	CAGCGTGATTACAGTCGCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA-2
Ortholog function: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Shewanella oneidensis MR-1	SO1103	-129	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella putrefaciens CN-32	Sputcn32_0940	-129	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella sp W3-18-1	Sputw3181_3236	-129	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella sp ANA-3	Shewana3_0938	-129	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella sp MR-4	Shewmr4_0936	-129	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella sp MR-7	Shewmr7_0974	-129	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella baltica OS155	Sbal_0924	-128	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella denitrificans OS217	Sden_0982	-128	4.3	CAGCGTGATTGCGATCGCATTA
Shewanella frigidimarina NCIMB 400	Sfri_0949	-127	4.3	CAGCGTGATTATGATCGCATTT
Shewanella amazonensis SB2B	Sama_2539	-127	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella loihica PV-4	Shew_2881	-131	4.3	CAGCGTGATTGCGATCGCATTT
		-73	4.1	ATGTTTGAAATCTATCTCATTT
Shewanella pealeana ATCC 700345	Spea_3103	-133	4.4	CAGCGTGATTCTGATCGCATTT
Shewanella halifaxensis HAW-EB4	Shal_3187	-127	3.7	CAGCGTGATTACAGTCGCACTT
Shewanella piezotolerans WP3	swp_1167	-132	4.3	CAGCGTGATTGCGATCGCATTT
Shewanella sediminis HAW-EB3	Ssed_3431	-130	4.1	CAGCGTGATTGCGGTCGCATTT
Shewanella woodyi ATCC 51908	Swoo_3617	-46	4	CAGCGTGATTGCGGTCGCAAAT

Position: -76 Score: 5.2 Sequence: AAATGTGATCCGTATTACATTT Locus tag: Shal_3240
	Shal_3240	-76	5.2	AAATGTGATCCGTATTACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lipB
Ortholog function: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Shewanella oneidensis MR-1	SO1162	-68	5.1	AAGTGTGATCTATCTTACATTT
Shewanella putrefaciens CN-32	Sputcn32_2875	-69	5.3	AAATGTGATCTATCTTACATTT
Shewanella sp W3-18-1	Sputw3181_1028	-75	5.3	AAATGTGATCTATCTTACATTT
Shewanella sp ANA-3	Shewana3_0989	-74	5.2	AAATGTGATCTGTCTTACATTT
Shewanella sp MR-4	Shewmr4_0985	-74	5.2	AAATGTGATCTGTCTTACATTT
Shewanella sp MR-7	Shewmr7_1050	-74	5.2	AAATGTGATCTGTCTTACATTT
Shewanella baltica OS155	Sbal_3281	-74	5.2	AAATGTGATCTGTCTTACATTT
Shewanella loihica PV-4	Shew_2941	-70	5.3	AAATGTGATCTACCTTACATTT
Shewanella pealeana ATCC 700345	Spea_3155	-76	5.2	AAATGTGATCCGTATTACATTT
Shewanella halifaxensis HAW-EB4	Shal_3240	-76	5.2	AAATGTGATCCGTATTACATTT
Shewanella piezotolerans WP3	swp_3928	-69	5.2	AAATGTGATCTGTCTTACATTT
Shewanella sediminis HAW-EB3	Ssed_3491	-75	5.3	AAATGTGATCTAGCTTACATTT
Shewanella woodyi ATCC 51908	Swoo_3714	-74	5.1	AAGTGTGATCTAGCTTACAATT

Position: -216 Score: 4.5 Sequence: TTAAGTGATTTGTATCGCCATA Position: -119 Score: 4.8 Sequence: AATAGTGAGGTGGGTCACAAAT Locus tag: Shal_3336
	Shal_3336	-216	4.5	TTAAGTGATTTGTATCGCCATA
		-119	4.8	AATAGTGAGGTGGGTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shew_1222
Ortholog function: hypothetical protein
Shewanella loihica PV-4	Shew_1222	-66	5	TAGTGTGATGCAGCTCTCAATA
Shewanella pealeana ATCC 700345	Spea_3260	-217	3.7	TTCAGTGATTTATATCGCCACT
		-121	4.4	AAAGGTGAGCTCGATCACAAAC
Shewanella halifaxensis HAW-EB4	Shal_3336	-216	4.5	TTAAGTGATTTGTATCGCCATA
		-119	4.8	AATAGTGAGGTGGGTCACAAAT
Shewanella piezotolerans WP3	swp_1085	-105	4.5	AAAGGTGAACTAGATCACAAAG
Shewanella sediminis HAW-EB3	Ssed_1323	-145	5.1	AAAGGTGATCGATATCACATAT
Shewanella woodyi ATCC 51908	Swoo_3332	-69	4	GAAGGTGATTAATATCACGTTA

Position: -90 Score: 4.8 Sequence: AATTGTGACTGAGATCAAATTC Locus tag: Shal_3428
	Shal_3428	-90	4.8	AATTGTGACTGAGATCAAATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3682
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO3682	-109	3.8	TTGCGTGATTTTGTGCAAGCAT
Shewanella putrefaciens CN-32	Sputcn32_2981	-76	3.8	ATTTTTGAGCAAGATCACGGCT
Shewanella sp W3-18-1	Sputw3181_0966	-76	3.8	ATTTTTGAGCAAGATCACGGCT
Shewanella sp MR-4	Shewmr4_0873	-166	3.7	TGACGTGATTTGTGGCGTATAA
Shewanella sp MR-7	Shewmr7_3149	-166	3.7	TGACGTGATTTGTGGCGTATAA
Shewanella baltica OS155	Sbal_3331	-76	3.7	ATTTTTGAGCAATATCACGGCT
Shewanella amazonensis SB2B	Sama_2854	-78	4	AAACTTGATCTGGATCACGAGT
Shewanella loihica PV-4	Shew_3102	-84	4.2	AAATGTGATCTGGATCAAGTGG
Shewanella pealeana ATCC 700345	Spea_3356	-102	4.7	AATTGTGAGCTAGATCAAACTC
Shewanella halifaxensis HAW-EB4	Shal_3428	-90	4.8	AATTGTGACTGAGATCAAATTC
Shewanella piezotolerans WP3	swp_1054	-79	4.3	TTTTGTGAGCAAGATCAACTTC
Shewanella sediminis HAW-EB3	Ssed_3715	-111	4.2	CAGTGTGATCTCGATCAACTTC

Position: -113 Score: 4.4 Sequence: GAATTTGATCTCAGTCACAATT Locus tag: Shal_3429
	Shal_3429	-113	4.4	GAATTTGATCTCAGTCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3683
Ortholog function: aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
Shewanella putrefaciens CN-32	Sputcn32_2982	-168	4.3	AGCCGTGATCTTGCTCAAAAAT
Shewanella sp W3-18-1	Sputw3181_0965	-168	4.3	AGCCGTGATCTTGCTCAAAAAT
Shewanella baltica OS155	Sbal_3332	-189	4.2	AGCCGTGATATTGCTCAAAAAT
Shewanella frigidimarina NCIMB 400	Sfri_0937	-146	3.9	CTTAGTGATCAAAATCAAATCA
Shewanella amazonensis SB2B	Sama_2855	-106	4.4	ACTCGTGATCCAGATCAAGTTT
Shewanella loihica PV-4	Shew_3103	-201	4.2	CCACTTGATCCAGATCACATTT
Shewanella pealeana ATCC 700345	Spea_3357	-113	4.6	GAGTTTGATCTAGCTCACAATT
Shewanella halifaxensis HAW-EB4	Shal_3429	-113	4.4	GAATTTGATCTCAGTCACAATT
Shewanella piezotolerans WP3	swp_1052	-113	4	GAAGTTGATCTTGCTCACAAAA

Position: -250 Score: 4.7 Sequence: TAATGTGCTATCGGTCACAGAA Locus tag: Shal_3518
	Shal_3518	-250	4.7	TAATGTGCTATCGGTCACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0939
Ortholog function: split-soret diheme cytochrome c
Shewanella frigidimarina NCIMB 400	Sfri_3633	-325	4.5	ATTTGTGAGCGATATCACGTCA
		-147	4.4	TTATCTGCTTTGAATCACATTT
Shewanella halifaxensis HAW-EB4	Shal_3518	-328	4.2	AAATGAGAGGTTAATCACACAG
		-250	4.7	TAATGTGCTATCGGTCACAGAA

Position: -227 Score: 4.6 Sequence: TTCTGTGACCGATAGCACATTA Position: -149 Score: 4.4 Sequence: CTGTGTGATTAACCTCTCATTT Position: 18 Score: 3.8 Sequence: AAATTTGATATTGATAAAGAAG Locus tag: Shal_3519
	Shal_3519	-227	4.6	TTCTGTGACCGATAGCACATTA
		-149	4.4	CTGTGTGATTAACCTCTCATTT
		18	3.8	AAATTTGATATTGATAAAGAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: cadC
Ortholog function: transcriptional regulator-related protein
Shewanella oneidensis MR-1	SO0940	-246	4.3	TAATGTGAGCGAAGGCACGATA
Shewanella sp MR-4	Shewmr4_0783	-246	3.8	CAATGTGCATCAACGCACATTA
Shewanella sp MR-7	Shewmr7_3240	-246	3.8	CAATGTGTGCCTGCGCACATTA
Shewanella baltica OS155	Sbal_0833	-75	4	TTGGGTTAGCAAGATCACATTA
Shewanella frigidimarina NCIMB 400	Sfri_3632	-334	4.6	AAATGTGATTCAAAGCAGATAA
		-234	4.3	TTTCATGATGTAAGTCTCATTA
		-156	5	TGACGTGATATCGCTCACAAAT
Shewanella loihica PV-4	Shew_0760	-234	3.9	CGATGTGAAGCTGATCACTCTA
Shewanella pealeana ATCC 700345	Spea_3438	-227	4.2	TTTCATGAACGATGTCACATTA
		-149	3.8	GAGTGTGACTAACGTCTCATTT
Shewanella halifaxensis HAW-EB4	Shal_3519	-227	4.6	TTCTGTGACCGATAGCACATTA
		-149	4.4	CTGTGTGATTAACCTCTCATTT
Shewanella piezotolerans WP3	swp_4010	-258	4.3	TTTATTGATCTAGATCTAATAA
Shewanella sediminis HAW-EB3	Ssed_0883	-147	4.7	CAGTGTGATTTTGTTCGCAAAA
Shewanella woodyi ATCC 51908	Swoo_0885	-232	4.2	AATGGTGAGCTGGATCATGTTA
		-145	4.5	CAATGTGATCCTCTTCGCAAAC

Position: -139 Score: 4 Sequence: TTTTGTGAGGTAGGTAAAGCTA Locus tag: Shal_3525
	Shal_3525	-139	4	TTTTGTGAGGTAGGTAAAGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemG
Ortholog function: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Shewanella putrefaciens CN-32	Sputcn32_3038	-207	4.5	TTTTGTGAGCAAGCTAAAATTA
		-135	3.9	AATTGATATTTAAATCACCTAG
Shewanella sp W3-18-1	Sputw3181_0907	-207	4.5	TTTTGTGAGCAAGCTAAAATTA
		-135	3.9	AATTGATATTTAAATCACCTAG
Shewanella sp ANA-3	Shewana3_0871	-317	4.1	TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-4	Shewmr4_3066	-320	4.1	TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-7	Shewmr7_0906	-318	4.1	TTTTGTGAGCAAGCTAGAATTA
Shewanella baltica OS155	Sbal_3400	-316	4.4	TTTTGTGAGACAGTTAAAACTA
Shewanella frigidimarina NCIMB 400	Sfri_0813	-144	4	TTTTGCGCGGCAGTTCACATTG
		-83	4.4	TGACGTGATCTGTTTCATGTAA
Shewanella amazonensis SB2B	Sama_2882	-130	3.9	AAATGTGAGGCAGTTGGAATTT
Shewanella loihica PV-4	Shew_0678	-126	4.1	ATTTGTGACATCGGTAAACTTA
Shewanella pealeana ATCC 700345	Spea_0673	-140	4	TTTTGTGAGGTAGGTAAAGCTA
		-98	3.8	CCTCGTGATCTGTTTCATGTAA
Shewanella halifaxensis HAW-EB4	Shal_3525	-139	4	TTTTGTGAGGTAGGTAAAGCTA
		-97	3.8	CCTCGTGATCTGTTTCATGTAA
Shewanella piezotolerans WP3	swp_4046	-124	3.9	TTTTGTGAGGTAGGTAAAGGTA
		-77	3.7	TGATCTGATTCAATTAAAAATA
Shewanella sediminis HAW-EB3	Ssed_3790	-120	4.9	ATTTGTGATGCAGGTAAAATTT
		-78	4	TGCCGTGATCTGTTTCATGTAA
Shewanella woodyi ATCC 51908	Swoo_0793	-123	4.3	AATTGTGATATAGGTAAGAGTA

Position: -147 Score: 3.9 Sequence: AAATATGAGCTTGTTCCAAATT Locus tag: Shal_3535
	Shal_3535	-147	3.9	AAATATGAGCTTGTTCCAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_4060
Ortholog function: phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
Shewanella sp ANA-3	Shewana3_0861	-204	4	AAACTTGCATCAGCTCACATAA
Shewanella sp MR-4	Shewmr4_3074	-203	3.9	AAACTTGCGTCACCTCACATAA
Shewanella sp MR-7	Shewmr7_0898	-204	4	AAACTTGCATCAGCTCACATAA
Shewanella frigidimarina NCIMB 400	Sfri_3189	-251	4.5	ATATTTGACCATGTTCAAATAT
Shewanella loihica PV-4	Shew_0671	-217	4	AATAGTGATGAGGTTAATATAG
Shewanella pealeana ATCC 700345	Spea_0661	-283	4.1	TTATGTGCCATGCAACACATTG
Shewanella halifaxensis HAW-EB4	Shal_3535	-147	3.9	AAATATGAGCTTGTTCCAAATT
Shewanella halifaxensis HAW-EB4	Shal_2004	-157	4.3	TAATGTGATTTTCAGAATAATT
Shewanella piezotolerans WP3	swp_4060	-318	4.3	TGAGGTGATGCATATCATAAAA

Position: -214 Score: 4.9 Sequence: TTTTGTGAGTCCGATAACATTT Locus tag: Shal_3589
	Shal_3589	-214	4.9	TTTTGTGAGTCCGATAACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydD
Ortholog function: Transport ATP-binding protein CydD
Shewanella oneidensis MR-1	SO3780	-191	4.4	TTTATTGATCAGCATCGCATTT
Shewanella putrefaciens CN-32	Sputcn32_3106	-169	4.7	TTTTGTGAATCGGTTAACAAAA
Shewanella sp W3-18-1	Sputw3181_0838	-169	4.7	TTTTGTGAATCGGTTAACAAAA
Shewanella sp ANA-3	Shewana3_0812	-187	4.4	TTTATTGATCTTTATCTCATTT
		-167	4.5	TTTTGTGAATAGGCTAACAAAA
Shewanella sp MR-4	Shewmr4_3127	-187	4.4	TTTATTGATCTTTATCTCATTT
		-167	4.5	TTTTGTGAATAGGCTAACAAAA
Shewanella sp MR-7	Shewmr7_0840	-187	4.4	TTTATTGATCTTTATCTCATTT
		-167	4.5	TTTTGTGAATAGGCTAACAAAA
Shewanella baltica OS155	Sbal_3463	-170	4.3	TTTTGTGAGTCTGCTAGCAAAA
Shewanella frigidimarina NCIMB 400	Sfri_3213	-214	4.2	TATTGTGTTGCAATTAACAATG
		-104	5	AAATGTGAATCAGATAACATTT
Shewanella amazonensis SB2B	Sama_2679	-137	4.2	TTTTTTGATCCAGCGCAAATTC
		-118	4.2	TTCTGTGAATCCCCTAACAAAT
Shewanella loihica PV-4	Shew_0613	-129	4.5	TTTTTTGATCTAGCTCAATTTT
		-110	4.8	TTTTGTGAGCCTAATAACAATT
Shewanella pealeana ATCC 700345	Spea_3494	-185	4.1	TTTATTGATCTAGCTCAATTTT
		-166	4.4	TTTTGTGAGTCCGATAGCAAAT
Shewanella halifaxensis HAW-EB4	Shal_3589	-233	4.1	TTTATTGATCTAGCTCAATTTT
		-214	4.9	TTTTGTGAGTCCGATAACATTT
Shewanella sediminis HAW-EB3	Ssed_3849	-139	4.1	AAAATTGATCTAGCTCAATTTT
		-120	4.7	TTTTGTGAATCCGTTAACAATT
Shewanella woodyi ATCC 51908	Swoo_0710	-149	4.1	TTTATTGATCTAGCTCAATTTT
		-130	4.7	TTTTGTGAATCTCTTAACATTT

Position: -319 Score: 3.4 Sequence: TTGTTTTACATCGATAATATTT Position: -226 Score: 3.5 Sequence: AGATGTGATACAAGCCTAATTG Locus tag: Shal_3603
	Shal_3603	-319	3.4	TTGTTTTACATCGATAATATTT
		-226	3.5	AGATGTGATACAAGCCTAATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: Cyclic AMP receptor protein Crp
Shewanella oneidensis MR-1	SO0624	-174	3.5	TTAGTTGACTAATATCACTAAA
Shewanella putrefaciens CN-32	Sputcn32_0652	-174	3.5	TTAGTTGACTAATATCACTAAA
Shewanella sp W3-18-1	Sputw3181_3522	-174	3.5	TTAGTTGACTAATATCACTAAA
Shewanella sp ANA-3	Shewana3_0617	-174	3.5	TTAGTTGACTAATATCACTAAA
Shewanella sp MR-4	Shewmr4_0618	-174	3.5	TTAGTTGACTAATATCACTAAA
Shewanella sp MR-7	Shewmr7_3412	-174	3.5	TTAGTTGACTAATATCACTAAA
Shewanella baltica OS155	Sbal_0578	-174	3.7	TTAGTTGACTTAAATCACTAAA
Shewanella denitrificans OS217	Sden_3190	-94	3.6	AAACACGATCTTGGTCAAAGTT
Shewanella frigidimarina NCIMB 400	Sfri_3292	-97	4	AAATACGATCTCTATCAAAGTT
Shewanella amazonensis SB2B	Sama_3004	-96	3.8	AATTTCGATCTGCATCATGGTT
Shewanella loihica PV-4	Shew_0585	-238	4	AGATGTGATATGGGCAACATTG
Shewanella pealeana ATCC 700345	Spea_3509	-225	3.6	AGATGTGATATAAGCCTAATTG
Shewanella halifaxensis HAW-EB4	Shal_3603	-226	3.5	AGATGTGATACAAGCCTAATTG
Shewanella piezotolerans WP3	swp_0755	-309	4.2	TTTATTGATAAGGTTCAAAAAA
Shewanella sediminis HAW-EB3	Ssed_3873	-173	3.8	TTAGTTGACTTATATCACTAAT
Shewanella woodyi ATCC 51908	Swoo_0662	-173	3.8	TTAGTTGACTTATATCACTAAT

Position: -138 Score: 3.7 Sequence: AACTGGCATTCTGATCACATTT Locus tag: Shal_3610
	Shal_3610	-138	3.7	AACTGGCATTCTGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Shewanella oneidensis MR-1	SO0617	-142	4	AACTGGTATTTTGATCACAATT
Shewanella putrefaciens CN-32	Sputcn32_0645	-142	4.1	AACTGGTATTTTGATCACATTT
Shewanella sp W3-18-1	Sputw3181_3529	-142	4.1	AACTGGTATTTTGATCACATTT
Shewanella sp ANA-3	Shewana3_0610	-142	4	AACTGGTATTTTGATCACAATT
Shewanella sp MR-4	Shewmr4_0611	-142	4	AACTGGTATTTTGATCACAATT
Shewanella sp MR-7	Shewmr7_3419	-308	3.8	AATTGTGTAGTTATTCATATTC
Shewanella baltica OS155	Sbal_0571	-142	4.1	AACTGGTATTTTGATCACATTT
Shewanella denitrificans OS217	Sden_3193	-136	4.1	AACTGGTATTTTGATCACATTT
Shewanella frigidimarina NCIMB 400	Sfri_3299	-137	4.1	AACTGGTATTTTGATCACATTT
Shewanella amazonensis SB2B	Sama_3011	-142	4	AACTGGTATTTCGATCACAATT
Shewanella loihica PV-4	Shew_0578	-140	3.8	AACTGGTATTTTGATCACGTTT
Shewanella pealeana ATCC 700345	Spea_3516	-138	4.1	AACTGGTATTTTGATCACATTT
Shewanella halifaxensis HAW-EB4	Shal_3610	-138	3.7	AACTGGCATTCTGATCACATTT
Shewanella piezotolerans WP3	swp_0747	-140	4.1	AACTGGTATTTTGATCACATTT
Shewanella sediminis HAW-EB3	Ssed_0809	-141	4.1	AACTGGTATTTTGATCACATTT
		-121	3.9	TTTCGTTATTAATGTCACTTAA
Shewanella woodyi ATCC 51908	Swoo_0655	-172	4.3	ATATGTGCTGCTGATCTTATTT

Position: -128 Score: 4.6 Sequence: AACTATGATCTGGCTCAAATTT Locus tag: Shal_3630
	Shal_3630	-128	4.6	AACTATGATCTGGCTCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: petA
Ortholog function: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Shewanella oneidensis MR-1	SO0608	-132	3.7	CACTATGATCTGCTTCTAATTT
		-103	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella putrefaciens CN-32	Sputcn32_3276	-130	3.7	CACTATGATCTGCTTCTAATTT
		-101	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella sp W3-18-1	Sputw3181_0665	-130	3.7	CACTATGATCTGCTTCTAATTT
		-101	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella sp ANA-3	Shewana3_0601	-132	3.7	CACTATGATCTGCTTCTAATTT
		-103	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-4	Shewmr4_0602	-132	3.7	CACTATGATCTGCTTCTAATTT
		-103	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-7	Shewmr7_3428	-132	3.7	CACTATGATCTGCTTCTAATTT
		-103	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella baltica OS155	Sbal_0562	-131	3.7	CACTATGATCTGCTTCTAATTT
		-102	3.7	TAATGAGCCCCGCTTCAAACTT
Shewanella frigidimarina NCIMB 400	Sfri_3307	-129	3.8	CACTATGATCTGGTTCTAATTT
Shewanella loihica PV-4	Shew_0570	-130	4.1	TACTATGATCTGCTTCTAATTT
		-101	3.9	TAATGAGCCCCGCCTCAAATTT
Shewanella pealeana ATCC 700345	Spea_3536	-78	4.2	AACTATGATCTGGTTCTAATTT
Shewanella halifaxensis HAW-EB4	Shal_3630	-128	4.6	AACTATGATCTGGCTCAAATTT
Shewanella piezotolerans WP3	swp_0793	-131	4.2	AACTATGATCTGGTTCTAATTT
Shewanella sediminis HAW-EB3	Ssed_0801	-132	4.4	TACTATGATCAAGCTCAAATTT
Shewanella woodyi ATCC 51908	Swoo_4166	-129	3.8	TACTATGATCTGCTTCTGATTT

Position: -104 Score: 4.3 Sequence: AAGTTTGACAGTGTTCAAATAT Locus tag: Shal_3640
	Shal_3640	-104	4.3	AAGTTTGACAGTGTTCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_3210
Ortholog function: hypothetical protein
Shewanella denitrificans OS217	Sden_3210	-122	4.3	AAGCGTGAACAGCATCACGTAA
Shewanella frigidimarina NCIMB 400	Sfri_3316	-160	4.3	ATAAGTGATCTAGTACTCACTT
		-99	4.2	AAACATGATCTGGTTCAAATCA
Shewanella amazonensis SB2B	Sama_3031	-165	3.9	TAGAGTGATCCTCTGCAAAGAA
		-104	4.8	AATTATGATGCAATTCAAATAA
Shewanella loihica PV-4	Shew_0560	-99	4.1	AACTATGACATTGTTCAAAAAA
Shewanella pealeana ATCC 700345	Spea_3546	-105	4.3	AAGTTTGACTGCGTTCAAATAA
Shewanella halifaxensis HAW-EB4	Shal_3640	-165	3.8	TTACGTGATCGAGCGCTAGTTT
		-104	4.3	AAGTTTGACAGTGTTCAAATAT
Shewanella sediminis HAW-EB3	Ssed_0791	-164	3.8	AAGTGTGATCTGACGCCGATTT
		-103	3.9	AACTTTGAACTTGTTCAAGTAT
Shewanella woodyi ATCC 51908	Swoo_4177	-44	4.5	AAGTTTGAGCTTGTTCAAATAT

Position: -102 Score: 4.3 Sequence: AAATGCGACCTAATTCAAGTAA Locus tag: Shal_3720
	Shal_3720	-102	4.3	AAATGCGACCTAATTCAAGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: modE
Ortholog function: molybdate-binding domain of ModE
Shewanella pealeana ATCC 700345	Spea_3636	-143	4.4	AAACATGATCCAGTTCACAACA
		-102	4	AAATGTGACTCAACCCAAGATA
Shewanella halifaxensis HAW-EB4	Shal_3720	-102	4.3	AAATGCGACCTAATTCAAGTAA
Shewanella piezotolerans WP3	swp_0644	-105	4.1	TTCTGCGACTTACTTCAAATAA

Position: -144 Score: 4.2 Sequence: AAATGTGGCGAAAATCACGTTA Locus tag: Shal_3735
	Shal_3735	-144	4.2	AAATGTGGCGAAAATCACGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrA
Ortholog function: aminotransferase class V
Shewanella pealeana ATCC 700345	Spea_3648	-143	4.2	AAGTGTGGTGATAATCACGTTA
Shewanella halifaxensis HAW-EB4	Shal_3735	-144	4.2	AAATGTGGCGAAAATCACGTTA
Shewanella woodyi ATCC 51908	Swoo_4279	-154	4.2	AACTGTGTTATTCATCACGATT

Position: -101 Score: 4.3 Sequence: AAGTGTGATCTTGGCTACAAAT Locus tag: Shal_3744
	Shal_3744	-101	4.3	AAGTGTGATCTTGGCTACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3654
Ortholog function: histidinol-phosphate aminotransferase (EC 2.6.1.9)
Shewanella pealeana ATCC 700345	Spea_3654	-101	4.9	ATTTGTGATCTTGATTGCAAAT
Shewanella halifaxensis HAW-EB4	Shal_3744	-101	4.3	AAGTGTGATCTTGGCTACAAAT
Shewanella woodyi ATCC 51908	Swoo_4751	-98	4.2	TTATGTGAACAACAGCTCAAAA

Position: -156 Score: 4.9 Sequence: AAGCGTGATCTGGTTCACGAAT Locus tag: Shal_3793
	Shal_3793	-156	4.9	AAGCGTGATCTGGTTCACGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_3134
Ortholog function: membrane protein
Shewanella loihica PV-4	Shew_0455	-94	4.9	CAATGTGATCTGCTTCACACTC
Shewanella pealeana ATCC 700345	Spea_3708	-85	4.7	AAGTGTGACCAGGTTCACGAAT
Shewanella halifaxensis HAW-EB4	Shal_3793	-156	4.9	AAGCGTGATCTGGTTCACGAAT
Shewanella piezotolerans WP3	swp_0564	-100	5.7	TTTTGTGATCTGCCTCACAAAT

Position: -297 Score: 3.8 Sequence: CACTTTGATATGATTAACAGTT Position: -110 Score: 3.9 Sequence: TAAAATGATGAGTGTCATAATT Locus tag: Shal_3794
	Shal_3794	-297	3.8	CACTTTGATATGATTAACAGTT
		-110	3.9	TAAAATGATGAGTGTCATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0572
Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17)
Shewanella oneidensis MR-1	SO0572	-102	4.4	TATTTTGACTCAAGTCAAAATT
Shewanella putrefaciens CN-32	Sputcn32_3304	-102	4.3	TATTTTGACTAAGGTCAAAATT
Shewanella sp W3-18-1	Sputw3181_0637	-102	4.3	TATTTTGACTAAGGTCAAAATT
Shewanella sp ANA-3	Shewana3_0572	-102	4.4	TATTTTGACTCATGTCAAAAAT
Shewanella sp MR-4	Shewmr4_0573	-102	4.5	TATTTTGACGCATGTCAAAATT
Shewanella sp MR-7	Shewmr7_3457	-102	4.5	TATTTTGACGCATGTCAAAATT
Shewanella baltica OS155	Sbal_0533	-102	4.3	TATTTTGACTCAAGTCAAAAAA
Shewanella denitrificans OS217	Sden_0534	-100	3.7	ATTTTTGACTAGGGTCAATATT
Shewanella frigidimarina NCIMB 400	Sfri_3510	-237	4.2	CATTGTGATCAATGTCATATCA
Shewanella loihica PV-4	Shew_0454	-124	4.3	TATTTTGACGCCAGTCAAAAAA
Shewanella pealeana ATCC 700345	Spea_3709	-110	3.7	AAAAATGACCAATGTCATAATT
Shewanella halifaxensis HAW-EB4	Shal_3794	-110	3.9	TAAAATGATGAGTGTCATAATT
Shewanella piezotolerans WP3	swp_0563	-110	3.6	TTTATTGACGATAGTCAAAAAA
Shewanella sediminis HAW-EB3	Ssed_0623	-108	4.1	TTTTTTGACTGAAGTCAAACTT

Position: -117 Score: 4.7 Sequence: TTAGGTGATCTGCCTCACAAAG Locus tag: Shal_3802
	Shal_3802	-117	4.7	TTAGGTGATCTGCCTCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3717
Ortholog function: hypothetical protein
Shewanella amazonensis SB2B	Sama_3143	-38	4.5	AAACTTGAGCCGCTTCACAAAT
Shewanella pealeana ATCC 700345	Spea_3717	-117	4.7	TTAGGTGATCTGCTTCACAAAC
Shewanella halifaxensis HAW-EB4	Shal_3802	-117	4.7	TTAGGTGATCTGCCTCACAAAG

Position: -235 Score: 4.7 Sequence: TTTTGTTACATGGATCGCATAT Locus tag: Shal_3818
	Shal_3818	-235	4.7	TTTTGTTACATGGATCGCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0543
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1	SO0543	-192	3.7	CGTTATGCGCTAAATCACAAAA
Shewanella putrefaciens CN-32	Sputcn32_3331	-88	4.2	ATTTTTACTCTAATTCACAAAA
Shewanella sp W3-18-1	Sputw3181_0610	-88	4.2	ATTTTTACTCTAATTCACAAAA
Shewanella sp ANA-3	Shewana3_0541	-193	4.1	AGTTATGCGCTAAATCACAAAA
Shewanella sp MR-4	Shewmr4_0542	-192	4	AGTTATGCGCTTAATCACAAAA
Shewanella sp MR-7	Shewmr7_3488	-191	4	AGTTATGCGCTTAATCACAAAA
Shewanella baltica OS155	Sbal_0501	-201	4.8	TGTTGTGCTCTCAATCACAAAA
		-88	3.9	AATTTTACCCTGATTCACAAAA
Shewanella denitrificans OS217	Sden_0657	-34	3.9	TAATATGACTAGAGTCAAACAT
Shewanella frigidimarina NCIMB 400	Sfri_3534	-200	4	ATATTTGATCACAAGCACACTC
Shewanella amazonensis SB2B	Sama_3164	-240	3.9	CATTGTTACTCACTTCATACAT
		-126	3.9	ATTTATGACCATACTCACAGAG
Shewanella loihica PV-4	Shew_0428	-190	4.2	TAGTGTTAACTCGATCAAACAA
Shewanella pealeana ATCC 700345	Spea_3733	-197	4.2	TTTTGCTACATAGATCGCATAT
Shewanella halifaxensis HAW-EB4	Shal_3818	-235	4.7	TTTTGTTACATGGATCGCATAT
Shewanella piezotolerans WP3	swp_0532	-156	4.6	TTTTGTTACACAGATCGCATAT
Shewanella sediminis HAW-EB3	Ssed_0598	-213	4.2	TAATGTTAAATCGATCTCACTT
Shewanella woodyi ATCC 51908	Swoo_4355	-215	3.8	AATTGCTAGATAGATCTCACTT

Position: -196 Score: 3.8 Sequence: TATAGCGATAAAGTTAAAAAAT Locus tag: Shal_3859
	Shal_3859	-196	3.8	TATAGCGATAAAGTTAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4118
Ortholog function: NADP-dependent malic enzyme (EC 1.1.1.40)
Shewanella oneidensis MR-1	SO4118	-318	4.4	TATTGTAATTTAGTCAACATTT
		-132	4.3	AAATGTGACCTAATTGACGTAT
Shewanella putrefaciens CN-32	Sputcn32_0554	-313	4	TATTGTAATTTAGCCAAAATTT
		-114	3.8	GAATATGACAGGTTTCACGTTT
Shewanella sp W3-18-1	Sputw3181_3618	-313	4	TATTGTAATTTAGCCAAAATTT
		-114	3.8	GAATATGACAGGTTTCACGTTT
Shewanella sp ANA-3	Shewana3_3669	-312	4.2	TATTGTAATTTAATCAACATTT
		-119	4.2	GGATATGATGGGTTTCACATTT
Shewanella sp MR-4	Shewmr4_3492	-312	4.2	TATTGTAATTTAATCAACATTT
Shewanella sp MR-7	Shewmr7_0460	-312	4.2	TATTGTAATTTAATCAACATTT
Shewanella denitrificans OS217	Sden_3353	-298	3.8	TCTTGTTATTTAAACAACATTT
		-197	4.2	TAATGTGATGCATAGCAGCCTT
Shewanella frigidimarina NCIMB 400	Sfri_3757	-303	4.1	TATTGTTATTTAGACAAAATAA
Shewanella pealeana ATCC 700345	Spea_3774	-196	3.8	TATAGCGATAAAGTTAAAAAAT
Shewanella halifaxensis HAW-EB4	Shal_3859	-196	3.8	TATAGCGATAAAGTTAAAAAAT
Shewanella piezotolerans WP3	swp_0481	-181	3.8	TATAGCGATAAAGTTAAAATTT
Shewanella woodyi ATCC 51908	Swoo_4423	-345	3.8	AAGTTTTATCTAGTTAACCCTT

Position: -94 Score: 4.1 Sequence: TTTGTTGATCTATCTCACGGTT Locus tag: Shal_3898
	Shal_3898	-94	4.1	TTTGTTGATCTATCTCACGGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdrC
Ortholog function: fumarate reductase cytochrome b subunit
Shewanella oneidensis MR-1	SO0397	-79	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella oneidensis MR-1	SO0397	-144	4	TTTTGTGATCATCTTCTAAGAG
		-79	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella putrefaciens CN-32	Sputcn32_3440	-67	4.1	ATTTGTGAGCGATATTAACTTT
Shewanella putrefaciens CN-32	Sputcn32_3440	-144	4.3	TTTTGTGATCTTCTTCTAAGAG
		-67	4.1	ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1	Sputw3181_0499	-67	4.1	ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1	Sputw3181_0499	-144	4.3	TTTTGTGATCTTCTTCTAAGAG
		-67	4.1	ATTTGTGAGCGATATTAACTTT
Shewanella sp ANA-3	Shewana3_0402	-77	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp ANA-3	Shewana3_0402	-144	4.2	TTTTGTGATCCTCTTCTAAGAG
		-77	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4	Shewmr4_0403	-77	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4	Shewmr4_0403	-144	4.2	TTTTGTGATCCTCTTCTAAGAG
		-77	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7	Shewmr7_3622	-76	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7	Shewmr7_3622	-144	4.2	TTTTGTGATCCTCTTCTAAGAG
		-76	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella baltica OS155	Sbal_3936	-105	4.1	TCAATTGATCTGGCTCACGTTT
Shewanella baltica OS155	Sbal_3936	-145	4.3	TTTTGTGATCTTCTTCTAAGAG
		-105	4.1	TCAATTGATCTGGCTCACGTTT
Shewanella amazonensis SB2B	Sama_3221	-144	4.1	GTTTGTGATCCGCTTCCAATAA
Shewanella loihica PV-4	Shew_0333	-98	4.4	TGTTTTGATCTATCTCACGGTT
Shewanella loihica PV-4	Shew_0333	-98	4.4	TGTTTTGATCTATCTCACGGTT
Shewanella pealeana ATCC 700345	Spea_0393	-138	4.7	ATTTGTGATCTTGATCTAATAG
		-106	4	AAGGGTGAGTTCCTTCACGAAA
		-94	4.1	TTTGTTGATCTATCTCACGGTT
Shewanella pealeana ATCC 700345	Spea_0393	-94	4.1	TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4	Shal_3898	-138	3.9	GTTTGTGATCTACGTCTAATAG
		-106	4.2	TGTAGTGACACTGATCACGAAA
		-94	4.1	TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4	Shal_3898	-94	4.1	TTTGTTGATCTATCTCACGGTT
Shewanella piezotolerans WP3	swp_0429	-106	3.8	TAGGGTGAGCAAAGTCACGATT
		-94	3.9	TTTGTTGATCTATCTCACTGTT
Shewanella piezotolerans WP3	swp_0429	-94	3.9	TTTGTTGATCTATCTCACTGTT
Shewanella sediminis HAW-EB3	Ssed_4115	-104	4.4	TGTTTTGATCTGCCTCACGGTT
		-74	3.9	ATATGTGAGCGACATTATGATT
Shewanella sediminis HAW-EB3	Ssed_4115	-104	4.4	TGTTTTGATCTGCCTCACGGTT
		-74	3.9	ATATGTGAGCGACATTATGATT
Shewanella woodyi ATCC 51908	Swoo_0508	-109	4.7	TGATTTGATCTGTCTCACAGTA
		-79	4	ATTTGTGAGCGACATTATCTAA
Shewanella woodyi ATCC 51908	Swoo_0508	-109	4.7	TGATTTGATCTGTCTCACAGTA
		-79	4	ATTTGTGAGCGACATTATCTAA

Position: -138 Score: 3.9 Sequence: GTTTGTGATCTACGTCTAATAG Position: -106 Score: 4.2 Sequence: TGTAGTGACACTGATCACGAAA Locus tag: Shal_3899
	Shal_3899	-138	3.9	GTTTGTGATCTACGTCTAATAG
		-106	4.2	TGTAGTGACACTGATCACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdC1
Ortholog function: Fumarate reductase cytochrome b subunit
Shewanella oneidensis MR-1	SO0396	-144	4	TTTTGTGATCATCTTCTAAGAG
		-79	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella putrefaciens CN-32	Sputcn32_3441	-144	4.3	TTTTGTGATCTTCTTCTAAGAG
		-67	4.1	ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1	Sputw3181_0498	-144	4.3	TTTTGTGATCTTCTTCTAAGAG
		-67	4.1	ATTTGTGAGCGATATTAACTTT
Shewanella sp ANA-3	Shewana3_0401	-144	4.2	TTTTGTGATCCTCTTCTAAGAG
		-77	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4	Shewmr4_0402	-144	4.2	TTTTGTGATCCTCTTCTAAGAG
		-77	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7	Shewmr7_3623	-144	4.2	TTTTGTGATCCTCTTCTAAGAG
		-76	3.9	ATTTGTGAGCGATATTAATTTT
Shewanella baltica OS155	Sbal_3937	-145	4.3	TTTTGTGATCTTCTTCTAAGAG
		-105	4.1	TCAATTGATCTGGCTCACGTTT
Shewanella frigidimarina NCIMB 400	Sfri_0456	-135	3.8	TTGTGTGACCCGCTTCTAACTC
		-103	3.8	ATAGGTGAACATTATCACGGTT
Shewanella frigidimarina NCIMB 400	Sfri_0456	-135	3.8	TTGTGTGACCCGCTTCTAACTC
		-103	3.8	ATAGGTGAACATTATCACGGTT
Shewanella amazonensis SB2B	Sama_3222	-144	4.1	GTTTGTGATCCGCTTCCAATAA
Shewanella pealeana ATCC 700345	Spea_0392	-138	4.7	ATTTGTGATCTTGATCTAATAG
		-106	4	AAGGGTGAGTTCCTTCACGAAA
		-94	4.1	TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4	Shal_3899	-138	3.9	GTTTGTGATCTACGTCTAATAG
		-106	4.2	TGTAGTGACACTGATCACGAAA
		-94	4.1	TTTGTTGATCTATCTCACGGTT
Shewanella piezotolerans WP3	swp_0428	-106	3.8	TAGGGTGAGCAAAGTCACGATT
		-94	3.9	TTTGTTGATCTATCTCACTGTT
Shewanella sediminis HAW-EB3	Ssed_4116	-126	4.5	GTTTGTGATCTGCTTCAAATAG
Shewanella woodyi ATCC 51908	Swoo_0507	-138	4.8	GTTTGTGATGTGGTTCAAAAAA

Position: -281 Score: 3.9 Sequence: TTTCGTGATCAGTGTCACTACA Locus tag: Shal_3900
	Shal_3900	-281	3.9	TTTCGTGATCAGTGTCACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: prmA
Ortholog function: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Shewanella loihica PV-4	Shew_0331	-274	3.8	AAGCGTGAGACACCTCACCCTG
		-242	4.1	ACATTTGACGTCGATCACAAAC
Shewanella pealeana ATCC 700345	Spea_0391	-283	4.3	TTTCGTGAAGGAACTCACCCTT
		-251	4.1	CTATTAGATCAAGATCACAAAT
Shewanella halifaxensis HAW-EB4	Shal_3900	-281	3.9	TTTCGTGATCAGTGTCACTACA
		-249	3.7	CTATTAGACGTAGATCACAAAC
Shewanella piezotolerans WP3	swp_0427	-286	4.5	AATCGTGACTTTGCTCACCCTA
Shewanella sediminis HAW-EB3	Ssed_4117	-53	5	TAATGTGATTGGTATTACAATA
Shewanella woodyi ATCC 51908	Swoo_0506	-233	4.5	TTTTTTGAACCACATCACAAAC

Position: -88 Score: 5.3 Sequence: AAGCGTGATGTTGATCACATTT Locus tag: Shal_3916
	Shal_3916	-88	5.3	AAGCGTGATGTTGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella oneidensis MR-1	SO4312	-91	5	AAGTGTGATGGACCTCTCATTT
Shewanella putrefaciens CN-32	Sputcn32_3586	-91	5.4	AAATGTGATGCAGATCTCATTT
		-51	3.8	AAGTGTTAACATAAGCACACTT
Shewanella sp W3-18-1	Sputw3181_3725	-91	5.4	AAATGTGATGCAGATCTCATTT
		-51	3.8	AAGTGTTAACATAAGCACACTT
Shewanella sp ANA-3	Shewana3_0387	-92	4.7	AAGTGTGACGAACTTCTCATTT
		-52	3.9	AAGTGTTAACATGAGCACACTT
Shewanella sp MR-4	Shewmr4_0389	-92	4.7	AAGTGTGACGAACTTCTCATTT
		-52	3.9	AAGTGTTAACATGAGCACACTT
Shewanella sp MR-7	Shewmr7_3637	-92	4.7	AAGTGTGACGAACTTCTCATTT
		-52	3.9	AAGTGTTAACATGAGCACACTT
Shewanella frigidimarina NCIMB 400	Sfri_0441	-129	3.8	AAATGCTACGATGATCACCATT
		-100	3.9	AAATGTGATCTTGATTGGCAAA
Shewanella amazonensis SB2B	Sama_3253	-90	5.4	AAATGTGATCTCTATCGCAAAT
Shewanella loihica PV-4	Shew_0319	-88	5.1	AAGTGTGATCCAGCTCTCAAAT
Shewanella pealeana ATCC 700345	Spea_0374	-87	5.3	AAGTGTGATCTTGATCGCATTT
Shewanella halifaxensis HAW-EB4	Shal_3916	-88	5.3	AAGCGTGATGTTGATCACATTT
Shewanella piezotolerans WP3	swp_0403	-106	5.5	AAATGTGATCGGAGTCACATTT
Shewanella sediminis HAW-EB3	Ssed_4132	-90	5.2	AAGTGTGATCTTGATCTCATTT
Shewanella woodyi ATCC 51908	Swoo_0484	-98	5	AAGTGTGATCTTGGTCTCATTT

Position: -133 Score: 5.1 Sequence: AAATGTGATCAACATCACGCTT Position: 8 Score: 4.1 Sequence: AAATCTGATCCGAATCGCAACT Locus tag: Shal_3917
	Shal_3917	-133	5.1	AAATGTGATCAACATCACGCTT
		8	4.1	AAATCTGATCCGAATCGCAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemC
Ortholog function: Porphobilinogen deaminase (EC 2.5.1.61)
Shewanella oneidensis MR-1	SO4313	-172	3.9	GATTGTGCTCATGTTAACACTT
		-132	4.5	AAATGAGAGGTCCATCACACTT
Shewanella putrefaciens CN-32	Sputcn32_3587	-173	4.1	AAGTGTGCTTATGTTAACACTT
		-133	5.2	AAATGAGATCTGCATCACATTT
Shewanella sp W3-18-1	Sputw3181_3726	-173	4.1	AAGTGTGCTTATGTTAACACTT
		-133	5.2	AAATGAGATCTGCATCACATTT
Shewanella sp ANA-3	Shewana3_0386	-172	4.2	AAGTGTGCTCATGTTAACACTT
		-132	4.3	AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-4	Shewmr4_0388	-172	4.2	AAGTGTGCTCATGTTAACACTT
		-132	4.3	AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-7	Shewmr7_3638	-172	4.2	AAGTGTGCTCATGTTAACACTT
		-132	4.3	AAATGAGAAGTTCGTCACACTT
Shewanella baltica OS155	Sbal_4000	-132	4.9	AAATGTGAAGTCCGTCACACTT
Shewanella denitrificans OS217	Sden_0388	-85	3.9	AAATCTGCTTTGCTTCAAACAT
Shewanella frigidimarina NCIMB 400	Sfri_0440	-167	4	AATGGTGATCATCGTAGCATTT
Shewanella amazonensis SB2B	Sama_3254	-89	5.1	ATTTGCGATAGAGATCACATTT
Shewanella loihica PV-4	Shew_0318	-119	4.7	ATTTGAGAGCTGGATCACACTT
Shewanella pealeana ATCC 700345	Spea_0373	-133	5	AAATGCGATCAAGATCACACTT
Shewanella halifaxensis HAW-EB4	Shal_3917	-133	5.1	AAATGTGATCAACATCACGCTT
Shewanella piezotolerans WP3	swp_0402	-40	4.3	AAATGTAATCCGTATCGCAACA
Shewanella sediminis HAW-EB3	Ssed_4133	-133	4.9	AAATGAGATCAAGATCACACTT
Shewanella woodyi ATCC 51908	Swoo_0483	-229	4.6	AAATGAGACCAAGATCACACTT

Position: -125 Score: 3.4 Sequence: CAACGTGACGTTTCGAATATAT Locus tag: Shal_3945
	Shal_3945	-125	3.4	CAACGTGACGTTTCGAATATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvC
Ortholog function: Ketol-acid reductoisomerase (EC 1.1.1.86)
Shewanella oneidensis MR-1	SO4349	-86	4	TATAGTGACTTCAATCACAACC
Shewanella putrefaciens CN-32	Sputcn32_3615	-86	4.3	TATAGTGATTTCAATCACAACC
Shewanella sp W3-18-1	Sputw3181_3755	-86	4.3	TATAGTGATTTCAATCACAACC
Shewanella sp ANA-3	Shewana3_0355	-86	4.3	TATAGTGATTTCAATCACAACC
Shewanella sp MR-4	Shewmr4_0361	-86	4.3	TATAGTGATTTCAATCACAACC
Shewanella sp MR-7	Shewmr7_3665	-86	4.3	TATAGTGATTTCAATCACAACC
Shewanella baltica OS155	Sbal_4032	-85	4.3	TATAGTGATTTCAATCACAACC
Shewanella frigidimarina NCIMB 400	Sfri_0421	-85	4.1	TATAGTGACTTCAATCACAACG
Shewanella amazonensis SB2B	Sama_3282	-88	4.4	TATAGTGAGTTCAATCACAATC
Shewanella loihica PV-4	Shew_0288	-126	3.7	CAATGTGACGTTTCGAATATAT
		-77	3.8	ATAGTTGATCTCATTCACAGCT
Shewanella piezotolerans WP3	swp_0358	-77	4.6	TATAGTGATCTCAATCACAGCT
Shewanella sediminis HAW-EB3	Ssed_4166	-78	4	TATAGTGATCTCAATCACTGCT
Shewanella woodyi ATCC 51908	Swoo_0441	-78	3.5	TATAGTGAATTCAATCACTGCT

Position: -247 Score: 4.2 Sequence: ATTCGTGAGGCAGCTCTCGAAT Position: -138 Score: 4.3 Sequence: TTGTATGACGTAACTCACAAAG Locus tag: Shal_3965
	Shal_3965	-247	4.2	ATTCGTGAGGCAGCTCTCGAAT
		-138	4.3	TTGTATGACGTAACTCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1415
Ortholog function: transcriptional regulator, TetR family
Shewanella oneidensis MR-1	SO1415	-135	3.8	GTATTTGAAGTAACTCACAAAG
		-94	4	AGGTGTGACCTTTATCCCGATT
Shewanella sp MR-4	Shewmr4_0298	-241	3.8	ATTCGTGAGTTATCTCGTGAAT
		-94	4	TGATGTGAGCTTAATCCCGATT
Shewanella loihica PV-4	Shew_0277	-137	4.4	TTGTTTGACGTAATTCACAAAG
Shewanella pealeana ATCC 700345	Spea_0326	-247	4.1	ATTCGTGAGTCAGCTCTCGAAT
		-138	4.5	TTATATGACGTAATTCACAAAG
Shewanella halifaxensis HAW-EB4	Shal_3965	-247	4.2	ATTCGTGAGGCAGCTCTCGAAT
		-138	4.3	TTGTATGACGTAACTCACAAAG
Shewanella sediminis HAW-EB3	Ssed_4183	-259	3.9	ATTCGTGAAGCAGATCTCGAAG
		-136	4.1	TTACATGAGGTAACTCACAAAG

Position: -269 Score: 4 Sequence: AATCGGGATTCACTTCACGCTA Position: -228 Score: 4.2 Sequence: CTTTGTGAGTTACGTCATACAA Position: -119 Score: 3.9 Sequence: ATTCGAGAGCTGCCTCACGAAT Position: -78 Score: 4.4 Sequence: TGGCGTGACTTAGTTCACCTTT Locus tag: Shal_3966
	Shal_3966	-269	4	AATCGGGATTCACTTCACGCTA
		-228	4.2	CTTTGTGAGTTACGTCATACAA
		-119	3.9	ATTCGAGAGCTGCCTCACGAAT
		-78	4.4	TGGCGTGACTTAGTTCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1414
Ortholog function: flavocytochrome c flavin subunit
Shewanella oneidensis MR-1	SO1414	-220	4.3	CTTTGTGAGTTACTTCAAATAC
Shewanella sp MR-4	Shewmr4_0299	-263	4	AATCGGGATTAAGCTCACATCA
Shewanella loihica PV-4	Shew_0276	-216	4.2	CTTTGTGAATTACGTCAAACAA
Shewanella pealeana ATCC 700345	Spea_0325	-228	4.3	CTTTGTGAATTACGTCATATAA
		-181	4.1	CAGATTGATTCCTTTCACATTT
		-78	4.4	TGGCGTGACTTAGTTCACCTTT
Shewanella halifaxensis HAW-EB4	Shal_3966	-269	4	AATCGGGATTCACTTCACGCTA
		-228	4.2	CTTTGTGAGTTACGTCATACAA
		-78	4.4	TGGCGTGACTTAGTTCACCTTT
Shewanella sediminis HAW-EB3	Ssed_4184	-280	3.8	AATCGGGATTAGCTTCACGCAA
		-239	4.1	CTTTGTGAGTTACCTCATGTAA
		-116	4	CTTCGAGATCTGCTTCACGAAT

Position: -156 Score: 4.1 Sequence: ATTCGCGACTTGGCTCACGAAT Position: -115 Score: 4.1 Sequence: CTGCGTGATCCAATTCAACTTT Locus tag: Shal_3970
	Shal_3970	-156	4.1	ATTCGCGACTTGGCTCACGAAT
		-115	4.1	CTGCGTGATCCAATTCAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1410
Ortholog function: conserved domain protein
Shewanella oneidensis MR-1	SO1410	-122	4.5	TGGCGTGATCCAATTCACCTTT
		-82	4.1	TATTGTTAGTCACGTAACAAAA
Shewanella sp MR-4	Shewmr4_0303	-108	4.4	TGCCGTGATCCAATTCACCTTT
		-68	4.1	TATTGTTAGTCACGTAACAATA
Shewanella loihica PV-4	Shew_0272	-151	3.9	ATTCGCGAGCCAAGTCACGAAT
		-110	4.6	TGGCGTGATCCATTTCACCTTT
Shewanella pealeana ATCC 700345	Spea_0321	-157	4.1	ATTCGCGACCGAGCTCACGAAT
		-116	4.1	CTGCGTGATCCATTTCAACTTT
Shewanella halifaxensis HAW-EB4	Shal_3970	-156	4.1	ATTCGCGACTTGGCTCACGAAT
		-115	4.1	CTGCGTGATCCAATTCAACTTT
Shewanella sediminis HAW-EB3	Ssed_4188	-154	3.9	ATTCGCGAGCTCTGTCACGAAT
		-113	4.2	GTGCGTGATCCAATTCACCTTT

Position: -294 Score: 3.4 Sequence: TAATGCATTCTCTCTCATAAAA Position: -96 Score: 4 Sequence: TTTTGTGCACATCTTCAAACTT Locus tag: Shal_3986
	Shal_3986	-294	3.4	TAATGCATTCTCTCTCATAAAA
		-96	4	TTTTGTGCACATCTTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbA
Ortholog function: nitrosative stress induced protein
Shewanella oneidensis MR-1	SO0324	-97	4.1	TTTTGTGCGCACCTTCATAAAT
Shewanella putrefaciens CN-32	Sputcn32_3663	-96	4.1	TTTTGTGCGCACCTTCATAAAT
Shewanella sp W3-18-1	Sputw3181_3804	-96	4.1	TTTTGTGCGCACCTTCATAAAT
Shewanella sp ANA-3	Shewana3_3845	-97	4.1	TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-4	Shewmr4_3649	-97	4.1	TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-7	Shewmr7_0295	-97	4.1	TTTTGTGCGCATCTTCATAAAT
Shewanella baltica OS155	Sbal_4067	-96	4.1	TTTTGTGCGCACCTTCATAAAT
Shewanella frigidimarina NCIMB 400	Sfri_0404	-142	4	TTTTGCGATCCCAACCTCAAAA
Shewanella amazonensis SB2B	Sama_3326	-94	3.6	TTTTGTGCGCATCTTCATGCTT
Shewanella loihica PV-4	Shew_0259	-96	4.1	TTTTGTGCGCATCTTCATAATT
Shewanella pealeana ATCC 700345	Spea_0303	-96	3.9	TTTTGTGCACATCTTCAAAGTT
Shewanella halifaxensis HAW-EB4	Shal_3986	-96	4	TTTTGTGCACATCTTCAAACTT
Shewanella piezotolerans WP3	swp_2171	-96	4	TTTTGTGCGCACCTTCAAACTT
Shewanella sediminis HAW-EB3	Ssed_4199	-187	3.9	TTTTGTGCACATCTTCATACTT
Shewanella woodyi ATCC 51908	Swoo_0395	-82	3.4	TTCTGTGCGCACCTTCATAGAT

Position: -133 Score: 4.3 Sequence: ATAGGTGATCTTTATCATAGTA Locus tag: Shal_4072
	Shal_4072	-133	4.3	ATAGGTGATCTTTATCATAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0296
Ortholog function: integral membrane domain protein
Shewanella frigidimarina NCIMB 400	Sfri_0385	-7	4.1	AAGTGTAATGAAATCCACAATA
Shewanella pealeana ATCC 700345	Spea_0248	-118	4.3	ATAGGTGATCTTTATCATAGTA
Shewanella halifaxensis HAW-EB4	Shal_4072	-133	4.3	ATAGGTGATCTTTATCATAGTA
Shewanella piezotolerans WP3	swp_2077	-120	4.3	ATGAGTGATCTTGTTCATAGTA

Position: -106 Score: 5 Sequence: AAAAGTGATATAGAGCACATTA Locus tag: Shal_4095
	Shal_4095	-106	5	AAAAGTGATATAGAGCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppc
Ortholog function: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Shewanella sp ANA-3	Shewana3_3906	-233	3.7	AATATTGCGTTAGCTCGCATTT
		-189	3.7	TATCGCGATTAGTTGCATATAA
Shewanella sp MR-4	Shewmr4_3710	-228	3.7	AATATTGCGTTAGCTCGCATTT
		-184	4.3	TATCGTGATTAGTTGCATATAA
Shewanella sp MR-7	Shewmr7_0235	-228	3.7	AATATTGCGTTAGCTCGCATTT
		-184	4.3	TATCGTGATTAGTTGCATATAA
Shewanella loihica PV-4	Shew_0200	-107	4.3	CAAGGTGATATAGAACACATAA
Shewanella halifaxensis HAW-EB4	Shal_4095	-106	5	AAAAGTGATATAGAGCACATTA
Shewanella piezotolerans WP3	swp_2053	-106	4.4	TAAAGTGAGGTAGAGCACATTC
Shewanella sediminis HAW-EB3	Ssed_4278	-111	3.9	CCGAGTGATGTAGAGCACATAA
Shewanella woodyi ATCC 51908	Swoo_0327	-111	4.7	AGAAGTGATGTAGAACACATAA

Position: -230 Score: 4.4 Sequence: CAATTTGATGTAGTTCGAATAT Locus tag: Shal_4103
	Shal_4103	-230	4.4	CAATTTGATGTAGTTCGAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: scyA
Ortholog function: cytochrome c-type protein
Shewanella oneidensis MR-1	SO0264	-234	4	CAATTTGATATGGTTCCAATAA
		-125	4.1	TGCTGAGATTCTAATCACAAAA
Shewanella putrefaciens CN-32	Sputcn32_3726	-229	4	CAATTTGATGTGGTTCCAATAA
		-129	3.7	CGCTGAGATTCTAATCACAAAA
Shewanella sp W3-18-1	Sputw3181_0189	-229	4	CAATTTGATGTGGTTCCAATAA
		-129	3.7	CGCTGAGATTCTAATCACAAAA
Shewanella sp ANA-3	Shewana3_0232	-234	4	CAATTTGATGTGGTTCCAATAA
		-125	4.1	TGCTGAGATTCTAATCACAAAA
Shewanella sp MR-4	Shewmr4_0232	-234	4	CAATTTGATGTGGTTCCAATAA
		-125	4.1	TGCTGAGATTCTAATCACAAAA
Shewanella sp MR-7	Shewmr7_0227	-234	4	CAATTTGATGTGGTTCCAATAA
		-125	3.7	CGCTGAGATTCTAATCACAAAA
Shewanella baltica OS155	Sbal_0229	-228	3.9	CAATATGATGTGGTTCCAATAA
		-128	4.5	TGTTGAGATTCTAATCACAAAA
Shewanella denitrificans OS217	Sden_3568	-131	3.8	AGCTGGGAGGCTTATCACAAAA
		-109	4.1	AGGTGTGATTTTATTAACTTTA
Shewanella frigidimarina NCIMB 400	Sfri_0180	-233	3.9	CAATTTGATATGGTTCCAAAAT
		-133	4.1	AGCTGAGATTGTTATCACAAAA
Shewanella amazonensis SB2B	Sama_0246	-225	4	CAATTTGATGCAGTTCCAATAA
Shewanella loihica PV-4	Shew_0191	-242	3.8	CAATTTGATATGCTTCCAAAAA
		-131	4.8	AATTCTGATATTAATCACAAAA
Shewanella pealeana ATCC 700345	Spea_0216	-230	4.4	CAATTTGATGTAGTTCGAATAT
		-130	4	TGGCGAGATTAATATCACAAAA
Shewanella halifaxensis HAW-EB4	Shal_4103	-230	4.4	CAATTTGATGTAGTTCGAATAT
Shewanella piezotolerans WP3	swp_2044	-231	4.4	CAATTTGATGTAGTTCGAATAT
		-131	4.8	TAACGCGATTTAAATCACAAAT
Shewanella sediminis HAW-EB3	Ssed_4286	-145	4.4	AGCTTTGATTGAAATCACAAAA
Shewanella woodyi ATCC 51908	Swoo_4658	-256	3.8	CAATTTGATATGCTTCCAAAAA
		-144	3.9	TACTTTGATTAAAGTCATAAAA

Position: -212 Score: 3.9 Sequence: TTTTGTGACATAAACCGTACTA Position: -112 Score: 3.8 Sequence: ATATTCGAACTACATCAAATTG Locus tag: Shal_4104
	Shal_4104	-212	3.9	TTTTGTGACATAAACCGTACTA
		-112	3.8	ATATTCGAACTACATCAAATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Shewanella oneidensis MR-1	SO0263	-222	4.2	TTTTGTGATTAGAATCTCAGCA
Shewanella putrefaciens CN-32	Sputcn32_3727	-213	3.9	TTTTGTGATTAGAATCTCAGCG
Shewanella sp W3-18-1	Sputw3181_0188	-213	3.9	TTTTGTGATTAGAATCTCAGCG
Shewanella sp ANA-3	Shewana3_0231	-222	4.2	TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-4	Shewmr4_0231	-222	4.2	TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-7	Shewmr7_0226	-222	3.9	TTTTGTGATTAGAATCTCAGCG
Shewanella baltica OS155	Sbal_0228	-212	4.4	TTTTGTGATTAGAATCTCAACA
Shewanella denitrificans OS217	Sden_3569	-186	4	TTTTGTGATAAGCCTCCCAGCT
Shewanella frigidimarina NCIMB 400	Sfri_0179	-213	4.2	TTTTGTGATAACAATCTCAGCT
Shewanella amazonensis SB2B	Sama_0245	-207	3.8	TTTTGTGAGTTCCCTCCCAGCT
Shewanella loihica PV-4	Shew_0190	-223	4.8	TTTTGTGATTAATATCAGAATT
Shewanella pealeana ATCC 700345	Spea_0215	-212	4.1	TTTTGTGATATTAATCTCGCCA
		-112	3.8	ATATTCGAACTACATCAAATTG
Shewanella halifaxensis HAW-EB4	Shal_4104	-212	3.9	TTTTGTGACATAAACCGTACTA
		-112	3.8	ATATTCGAACTACATCAAATTG
Shewanella piezotolerans WP3	swp_2043	-212	5	ATTTGTGATTTAAATCGCGTTA
		-112	3.8	ATATTCGAACTACATCAAATTG
Shewanella sediminis HAW-EB3	Ssed_4287	-223	4.5	TTTTGTGATTTCAATCAAAGCT
Shewanella woodyi ATCC 51908	Swoo_4659	-224	4.2	TTTTATGACTTTAATCAAAGTA

Position: -112 Score: 4.8 Sequence: TTTTTTGATCTTGCCCACATAT Locus tag: Shal_4178
	Shal_4178	-112	4.8	TTTTTTGATCTTGCCCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Shewanella oneidensis MR-1	SO0162	-150	3.8	CTCAATGATCCAGCTCACACTT
Shewanella putrefaciens CN-32	Sputcn32_3571	-151	4	CACCATGATCCAGTTCACACTT
Shewanella sp W3-18-1	Sputw3181_3708	-151	4	CACCATGATCCAGTTCACACTT
Shewanella sp ANA-3	Shewana3_0147	-151	3.8	CTCAATGATCCAGCTCACACTT
Shewanella sp MR-4	Shewmr4_0152	-149	3.8	CTCAATGATCCAGCTCACACTT
Shewanella sp MR-7	Shewmr7_0147	-149	3.8	CTCAATGATCCAGCTCACACTT
Shewanella amazonensis SB2B	Sama_0165	-145	4.1	TTTTCAGATCCGGCTCACACAT
Shewanella loihica PV-4	Shew_3623	-128	4.6	TTTCGCGATCTTCCTCACACAT
Shewanella pealeana ATCC 700345	Spea_0140	-112	4.9	TTTTTTGATCTAGTACACATAT
Shewanella halifaxensis HAW-EB4	Shal_4178	-112	4.8	TTTTTTGATCTTGCCCACATAT
Shewanella piezotolerans WP3	swp_0182	-113	4.9	TTTTTTGATCTAGTCCACATAT
Shewanella sediminis HAW-EB3	Ssed_4362	-142	4.1	AAACACGATCTTCCTCACACAT
Shewanella woodyi ATCC 51908	Swoo_4740	-100	3.8	AATCGTGACATAGCGCAAAGAC

Position: -96 Score: 4.7 Sequence: TTATGTGATCGGGGTAATATTT Locus tag: Shal_4221
	Shal_4221	-96	4.7	TTATGTGATCGGGGTAATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: engB
Ortholog function: GTP-binding protein EngB
Shewanella oneidensis MR-1	SO4667	-96	4.7	TAATGTGATCGGGGTAATATTT
Shewanella putrefaciens CN-32	Sputcn32_3907	-96	4.6	TAATGTGATCGGAGTAATATTT
Shewanella sp W3-18-1	Sputw3181_0044	-96	4.6	TAATGTGATCGGAGTAATATTT
Shewanella sp ANA-3	Shewana3_4110	-96	4.7	TAATGTGATCGGGGTAATATTT
Shewanella sp MR-4	Shewmr4_3906	-96	4.7	TAATGTGATCGGGGTAATATTT
Shewanella sp MR-7	Shewmr7_3998	-96	4.7	TAATGTGATCGGGGTAATATTT
Shewanella baltica OS155	Sbal_0052	-95	4.6	TAATGTGATCGGAGTAATATTT
Shewanella denitrificans OS217	Sden_3621	-182	3.8	TATTATGCTCGAAATAATATTT
Shewanella frigidimarina NCIMB 400	Sfri_3944	-104	4.7	TAATGTGATCAGGCTAATATTT
Shewanella amazonensis SB2B	Sama_0092	-96	4.1	ATATGTGATCGGGGCAATATTT
Shewanella loihica PV-4	Shew_3715	-95	4.7	TTATGTGATCGGGGTAATATTT
Shewanella pealeana ATCC 700345	Spea_0101	-96	4.7	TTATGTGATCGGGGTAATATTT
Shewanella halifaxensis HAW-EB4	Shal_4221	-96	4.7	TTATGTGATCGGGGTAATATTT
Shewanella piezotolerans WP3	swp_5074a	-96	4.7	TTATGTGATCGGGGTAATATTT
Shewanella sediminis HAW-EB3	Ssed_0095	-95	4.7	TTATGTGATCGAGGTAATATTT
Shewanella woodyi ATCC 51908	Swoo_0058	-110	4.8	TATTGTGATCGAGGTAATATTT

Position: -95 Score: 4.4 Sequence: AAATATTACCCCGATCACATAA Locus tag: Shal_4222
	Shal_4222	-95	4.4	AAATATTACCCCGATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytcB
Ortholog function: Cytochrome c4
Shewanella oneidensis MR-1	SO4666	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella oneidensis MR-1	SO4666	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella putrefaciens CN-32	Sputcn32_3908	-95	4.3	AAATATTACTCCGATCACATTA
Shewanella putrefaciens CN-32	Sputcn32_3908	-95	4.3	AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1	Sputw3181_0043	-95	4.3	AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1	Sputw3181_0043	-95	4.3	AAATATTACTCCGATCACATTA
Shewanella sp ANA-3	Shewana3_4111	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella sp ANA-3	Shewana3_4111	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella sp MR-4	Shewmr4_3907	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella sp MR-4	Shewmr4_3907	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella sp MR-7	Shewmr7_3999	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella sp MR-7	Shewmr7_3999	-95	4.4	AAATATTACCCCGATCACATTA
Shewanella baltica OS155	Sbal_0051	-95	4.3	AAATATTACTCCGATCACATTA
Shewanella baltica OS155	Sbal_0051	-95	4.3	AAATATTACTCCGATCACATTA
Shewanella denitrificans OS217	Sden_3622	-94	3.7	AAATATTATTTCGAGCATAATA
Shewanella denitrificans OS217	Sden_3622	-94	3.7	AAATATTATTTCGAGCATAATA
Shewanella frigidimarina NCIMB 400	Sfri_3945	-181	4.3	AAATATTAGCCTGATCACATTA
Shewanella frigidimarina NCIMB 400	Sfri_3945	-181	4.3	AAATATTAGCCTGATCACATTA
Shewanella amazonensis SB2B	Sama_0091	-95	3.7	AAATATTGCCCCGATCACATAT
Shewanella loihica PV-4	Shew_3716	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella loihica PV-4	Shew_3716	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345	Spea_0100	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345	Spea_0100	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4	Shal_4222	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4	Shal_4222	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3	swp_5075	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3	swp_5075	-95	4.4	AAATATTACCCCGATCACATAA
Shewanella sediminis HAW-EB3	Ssed_0094	-96	4.5	AAATATTACCTCGATCACATAA
Shewanella sediminis HAW-EB3	Ssed_0094	-96	4.5	AAATATTACCTCGATCACATAA
Shewanella woodyi ATCC 51908	Swoo_0057	-157	4.2	AAATATGATGTTTTGCACTTTA
		-96	4.4	AAATATTACCTCGATCACAATA
Shewanella woodyi ATCC 51908	Swoo_0057	-157	4.2	AAATATGATGTTTTGCACTTTA
		-96	4.4	AAATATTACCTCGATCACAATA

Position: -83 Score: 4.6 Sequence: AAACATGACCTAGATCACACTA Locus tag: Shal_4284
	Shal_4284	-83	4.6	AAACATGACCTAGATCACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiA-2
Ortholog function: Ribosome hibernation protein YfiA
Shewanella oneidensis MR-1	SO3422	-78	4.7	AAGTGTGATTTAACTCTCGTTT
Shewanella putrefaciens CN-32	Sputcn32_2740	-77	5.1	TTTTGTGATTTAGATCTCGTTT
Shewanella sp W3-18-1	Sputw3181_1272	-77	5.1	TTTTGTGATTTAGATCTCGTTT
Shewanella sp ANA-3	Shewana3_1133	-78	5.1	AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-4	Shewmr4_1132	-78	5.1	AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-7	Shewmr7_1203	-78	5.1	AAATGTGATTTAGATCTCGTTT
Shewanella baltica OS155	Sbal_1221	-77	5.2	AAATGTGATCTAGATCTCGTTT
Shewanella denitrificans OS217	Sden_2746	-77	4.8	AAGTGTGACTTTGATCACGCTT
		-38	4.1	TAATCTGAAGTTAAGCACATAA
Shewanella frigidimarina NCIMB 400	Sfri_2912	-77	5	AAGTGTGATGCAGATCACTATT
Shewanella amazonensis SB2B	Sama_0899	-78	4.3	AAACGTGATTTTACTCACGACT
Shewanella loihica PV-4	Shew_1073	-76	4.6	AAAGTTGATCTAGATCACGTTT
Shewanella pealeana ATCC 700345	Spea_1060	-76	4.6	AAACGTGATTTAGATCACGACT
Shewanella halifaxensis HAW-EB4	Shal_4284	-83	4.6	AAACATGACCTAGATCACACTA
		-58	3.8	TAATGTGATTGGACTATTGTAA
Shewanella halifaxensis HAW-EB4	Shal_1108	-76	4.6	AAACGTGATTTAGATCACGACT
Shewanella piezotolerans WP3	swp_3757	-76	4.6	AAACGTGATTTAGATCACGACT
Shewanella sediminis HAW-EB3	Ssed_1169	-222	3.8	TTTTGAGAGGCAAATAAAAAAA
		-76	4.6	AAACGTGATTTAGATCACGACT
Shewanella woodyi ATCC 51908	Swoo_1264	-76	4.5	AAACGTGATCAAGATCACGACT

Position: -46 Score: 3.8 Sequence: TATTGCGACTCAATTAATACAT Locus tag: Shal_4287
	Shal_4287	-46	3.8	TATTGCGACTCAATTAATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4743
Ortholog function: ferrichrome-iron receptor
Shewanella oneidensis MR-1	SO4743	-164	4.9	AATTTTGATCTGTATCACGCAA
Shewanella putrefaciens CN-32	Sputcn32_3953	-116	4.7	TAATTTGATCGGTATCACACTC
Shewanella sp W3-18-1	Sputw3181_4050	-116	4.7	TAATTTGATCGGTATCACACTC
Shewanella sp MR-4	Shewmr4_3922	-116	4.3	AAACTTGATCTAAGTCACGCTA
Shewanella sp MR-7	Shewmr7_4014	-116	4.3	AAACTTGATCTAAGTCACGCTA
Shewanella frigidimarina NCIMB 400	Sfri_4042	-116	4.7	ATTTTTGATATATATCACAGTC
Shewanella halifaxensis HAW-EB4	Shal_4287	-46	3.8	TATTGCGACTCAATTAATACAT
Shewanella piezotolerans WP3	swp_5150	-117	4.3	TGTTGTGCGCGAGTTCACATTG
Shewanella woodyi ATCC 51908	Swoo_4894	-91	3.8	CTTTTTGATCTTTATCTAGTTT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Crp regulog to Shewanella halifaxensis HAW-EB4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --