Propagation of Crp regulog to Shewanella halifaxensis HAW-EB4
| Source regulog: | Crp - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Shewanella halifaxensis HAW-EB4 |
| Orthologous TF(s) | Shal_3603 |
| Regulated genes | 224 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -134
Score: 4.4 Sequence: TTTTGTGATTAGTCGCACACTG
Locus tag: Shal_0016
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| Shal_0016 | -134 | 4.4 | TTTTGTGATTAGTCGCACACTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadB | ||||
| Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) | ||||
| Shewanella oneidensis MR-1 | SO0021 | -210 | 4.1 | CTTTGTGCAGTGTATCACAAAG |
| Shewanella putrefaciens CN-32 | Sputcn32_0013 | -210 | 3.7 | CTCTGTGCAGTGTATCACAAAG |
| Shewanella sp W3-18-1 | Sputw3181_0013 | -210 | 3.7 | CTCTGTGCAGTGTATCACAAAG |
| Shewanella sp ANA-3 | Shewana3_0024 | -210 | 4.1 | CTTTGTGCAGTGTATCACAAAG |
| Shewanella sp MR-4 | Shewmr4_0018 | -210 | 4.1 | CTTTGTGCAGTGTATCACAAAG |
| Shewanella sp MR-7 | Shewmr7_0016 | -210 | 4.1 | CTTTGTGCAGTGTATCACAAAG |
| Shewanella baltica OS155 | Sbal_0021 | -210 | 3.7 | CTCTGTGCAGTGTATCACAAAG |
| Shewanella amazonensis SB2B | Sama_0032 | -193 | 3.8 | TGCTGTGCAGTGTATCACAAAG |
| Shewanella pealeana ATCC 700345 | Spea_0018 | -134 | 4.6 | TTTTGTGATTCGTCGCACACTG |
| Shewanella halifaxensis HAW-EB4 | Shal_0016 | -134 | 4.4 | TTTTGTGATTAGTCGCACACTG |
| Shewanella piezotolerans WP3 | swp_0035 | -127 | 4.4 | TTATGTGATTAGTCGCACACTG |
|
Position: -250
Score: 4 Sequence: CAGTGTGCGACTAATCACAAAA
Locus tag: Shal_0017
|
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| Shal_0017 | -250 | 4 | CAGTGTGCGACTAATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepQ | ||||
| Ortholog function: Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) | ||||
| Shewanella oneidensis MR-1 | SO0022 | -237 | 4.4 | CTTTGTGATACACTGCACAAAG |
| Shewanella putrefaciens CN-32 | Sputcn32_0014 | -302 | 4.2 | CTTTGTGATACACTGCACAGAG |
| Shewanella sp W3-18-1 | Sputw3181_0014 | -302 | 4.2 | CTTTGTGATACACTGCACAGAG |
| Shewanella sp ANA-3 | Shewana3_0025 | -255 | 4.4 | CTTTGTGATACACTGCACAAAG |
| Shewanella sp MR-4 | Shewmr4_0019 | -255 | 4.4 | CTTTGTGATACACTGCACAAAG |
| Shewanella sp MR-7 | Shewmr7_0017 | -255 | 4.4 | CTTTGTGATACACTGCACAAAG |
| Shewanella baltica OS155 | Sbal_0022 | -302 | 4.2 | CTTTGTGATACACTGCACAGAG |
| Shewanella amazonensis SB2B | Sama_0033 | -109 | 4 | CTTTGTGATACACTGCACAGCA |
| Shewanella pealeana ATCC 700345 | Spea_0019 | -252 | 4.1 | CAGTGTGCGACGAATCACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0017 | -250 | 4 | CAGTGTGCGACTAATCACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0024 | -48 | 3.8 | TTTTCTGATAGATTTTACATCA |
|
Position: -109
Score: 4.5 Sequence: TTTTGTGTTTGAGTTAACAAAA
Locus tag: Shal_0063
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| Shal_0063 | -109 | 4.5 | TTTTGTGTTTGAGTTAACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0075 | ||||
| Ortholog function: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3973 | -107 | 4 | AAACGTGACCGTAAGCTCAAAA |
| Shewanella loihica PV-4 | Shew_3776 | -110 | 4.7 | TTTTGTGCTCCAATTAACATTA |
| Shewanella pealeana ATCC 700345 | Spea_4186 | -109 | 4.3 | TTTTGTGTGTTAGTTAACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0063 | -109 | 4.5 | TTTTGTGTTTGAGTTAACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4860 | -110 | 4.6 | ATCTGTGATCGGTTTAACACTA |
|
Position: -106
Score: 3.9 Sequence: ATTTGTGAGCCCGCTTGTATTT
Locus tag: Shal_0072
|
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| Shal_0072 | -106 | 3.9 | ATTTGTGAGCCCGCTTGTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hutC | ||||
| Ortholog function: histidine utilization repressor | ||||
| Shewanella oneidensis MR-1 | SO0096 | -151 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0078 | -178 | 4.1 | TTATGTGAGCTGGCTTGTATTT |
| Shewanella sp W3-18-1 | Sputw3181_3999 | -178 | 4.1 | TTATGTGAGCTGGCTTGTATTT |
| Shewanella sp ANA-3 | Shewana3_0099 | -142 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella sp MR-4 | Shewmr4_0098 | -142 | 4.1 | TTATGTGAGCCAGCTTGTATTT |
| Shewanella sp MR-7 | Shewmr7_0093 | -142 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella baltica OS155 | Sbal_4253 | -177 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella loihica PV-4 | Shew_3758 | -138 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella pealeana ATCC 700345 | Spea_4170 | -106 | 3.8 | ATTTGTGAGCTAGCTTGTGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0072 | -106 | 3.9 | ATTTGTGAGCCCGCTTGTATTT |
| Shewanella piezotolerans WP3 | swp_0132 | -177 | 4.2 | ATTTGTGAGCTAGCTTGTATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4448 | -150 | 4.1 | AGTTGTGATCCAACTTGTATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4839 | -201 | 4.1 | AAGTGTGATCCAACTTGTATTT |
|
Position: -181
Score: 4.2 Sequence: TAGTTTGAACTAGATCAACTAT
Position: -85
Score: 4.5 Sequence: AAATGTGATCTACTACTAATTT
Locus tag: Shal_0099
|
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| Shal_0099 | -181 | 4.2 | TAGTTTGAACTAGATCAACTAT | |
| -85 | 4.5 | AAATGTGATCTACTACTAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4503 | ||||
| Ortholog function: formate dehydrogenase chain D (EC 1.2.1.2) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0343 | -187 | 4 | AAGTTTGAAGTAGATCATCAAA |
| -91 | 4.1 | AATTGCGATAGATCACGCATTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3865 | -131 | 4 | AAGTTTGAAGTAGATCATCAAA |
| -35 | 4.1 | AATTGCGATAGATCACGCATTT | ||
| Shewanella sp ANA-3 | Shewana3_3910 | -187 | 4 | TTGTTTGAGGTGGATCATCAAA |
| -91 | 4 | AATTGCGACGGATCACGCATTT | ||
| Shewanella sp MR-4 | Shewmr4_3714 | -187 | 4 | TTGTTTGAGGTGGATCATCAAA |
| -91 | 4 | AATTGCGACGGATCACGCATTT | ||
| Shewanella sp MR-7 | Shewmr7_3785 | -187 | 4 | TTGTTTGAGGTGGATCATCAAA |
| -91 | 4 | AATTGCGACGGATCACGCATTT | ||
| Shewanella baltica OS155 | Sbal_4130 | -187 | 4 | TAGTTTGAACTAGATCATCAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0051 | -139 | 3.7 | AGATTTGCGCCAGATCACGCTT |
| Shewanella amazonensis SB2B | Sama_3619 | -186 | 3.9 | AAGTTTGAAGTGGATCATCAAA |
| Shewanella loihica PV-4 | Shew_0053 | -190 | 4 | TAGTTTGAACTGGATCATCAAA |
| Shewanella pealeana ATCC 700345 | Spea_4143 | -183 | 4.2 | TAGTTTGAACTAGATCAACTAT |
| -87 | 3.9 | AAGTGTGATCGACCACTAACTT | ||
| -20 | 3.9 | TTGCGTGACAAGGATAAAAAAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0099 | -181 | 4.2 | TAGTTTGAACTAGATCAACTAT |
| -85 | 4.5 | AAATGTGATCTACTACTAATTT | ||
| Shewanella piezotolerans WP3 | swp_5036 | -86 | 4.2 | AAGTGTGATCTGCAGCTAACTT |
| -25 | 4 | AAAGGTAATTGAAATCTCATAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_4427 | -153 | 3.9 | TAACTTGAGCTGGATCATCAAT |
| -59 | 3.8 | TTAAATGAGAGAGATCACGCAT | ||
| Shewanella woodyi ATCC 51908 | Swoo_4819 | -163 | 4.3 | TTTTTTGAGCTAGATCATCAAA |
|
Position: -124
Score: 4.2 Sequence: ATAGTTGATCTAGTTCAAACTA
Locus tag: Shal_0100
|
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| Shal_0100 | -124 | 4.2 | ATAGTTGATCTAGTTCAAACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4504 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO4504 | -130 | 4 | TTTGATGATCCACTTCAAACTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0342 | -140 | 4.1 | TTTGATGATCTACTTCAAACTT |
| Shewanella sp W3-18-1 | Sputw3181_3866 | -140 | 4.1 | TTTGATGATCTACTTCAAACTT |
| Shewanella sp ANA-3 | Shewana3_3911 | -225 | 3.8 | ATGCGTGATCCGTCGCAATTAT |
| -131 | 3.9 | TTTGATGATCCACCTCAAACAA | ||
| Shewanella sp MR-4 | Shewmr4_3715 | -225 | 3.8 | ATGCGTGATCCGTCGCAATTAT |
| -131 | 3.9 | TTTGATGATCCACCTCAAACAA | ||
| Shewanella sp MR-7 | Shewmr7_3786 | -225 | 3.8 | ATGCGTGATCCGTCGCAATTAT |
| -131 | 3.9 | TTTGATGATCCACCTCAAACAA | ||
| Shewanella baltica OS155 | Sbal_4131 | -136 | 4.2 | TTTGATGATCTAGTTCAAACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0052 | -125 | 4.2 | TTTCGGGATCTAGTTCAAAGTT |
| Shewanella amazonensis SB2B | Sama_3618 | -113 | 4 | TTTGATGATCCACTTCAAACTT |
| Shewanella loihica PV-4 | Shew_0054 | -127 | 4.1 | TTTGATGATCCAGTTCAAACTA |
| Shewanella pealeana ATCC 700345 | Spea_4142 | -123 | 4.2 | ATAGTTGATCTAGTTCAAACTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0100 | -124 | 4.2 | ATAGTTGATCTAGTTCAAACTA |
| Shewanella piezotolerans WP3 | swp_5034 | -148 | 4 | TTATGAGATTTCAATTACCTTT |
| -87 | 3.8 | AAGTTAGCTGCAGATCACACTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4426 | -217 | 4.1 | ATGCGTGATCTCTCTCATTTAA |
| -123 | 3.9 | ATTGATGATCCAGCTCAAGTTA | ||
| Shewanella woodyi ATCC 51908 | Swoo_4818 | -148 | 4.2 | TTTGATGATCTAGCTCAAAAAA |
|
Position: -164
Score: 4.2 Sequence: AAGTATGACCCGCTTAACAAAA
Locus tag: Shal_0116
|
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| Shal_0116 | -164 | 4.2 | AAGTATGACCCGCTTAACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4520 | ||||
| Ortholog function: Oxygen-independent coproporphyrinogen III oxidase, putative | ||||
| Shewanella oneidensis MR-1 | SO4520 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3506 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0400 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella sp ANA-3 | Shewana3_3926 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella sp MR-4 | Shewmr4_3730 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella sp MR-7 | Shewmr7_3801 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella baltica OS155 | Sbal_0219 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0076 | -182 | 4.4 | AAACATGATCTGCTTAACAAAT |
| Shewanella amazonensis SB2B | Sama_3604 | -171 | 3.9 | AAATATGCGCTGCTTAACAAAA |
| Shewanella loihica PV-4 | Shew_0073 | -182 | 4.1 | AAACATGACATGCTTAACAATT |
| Shewanella pealeana ATCC 700345 | Spea_4126 | -164 | 4.4 | AAGTATGATCCGCTTAACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0116 | -164 | 4.2 | AAGTATGACCCGCTTAACAAAA |
| Shewanella piezotolerans WP3 | swp_5018 | -166 | 4.2 | AAGTATGACTTACTTAACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_4414 | -203 | 4 | AAACATGACTTGCTTAACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4806 | -184 | 4 | AAACATGACTCGCTTAACAAAA |
|
Position: -180
Score: 4.2 Sequence: TTTTGTGACAGTTATCACGCCA
Locus tag: Shal_0121
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| Shal_0121 | -180 | 4.2 | TTTTGTGACAGTTATCACGCCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfD | ||||
| Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) | ||||
| Shewanella oneidensis MR-1 | SO4453 | -171 | 4.3 | ATCTGTGACAGTGCTCACCCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0388 | -171 | 4.2 | ATCTGTGACAGTCCTCACCCAA |
| Shewanella sp W3-18-1 | Sputw3181_0242 | -171 | 4.2 | ATCTGTGACAGTCCTCACCCAA |
| Shewanella sp ANA-3 | Shewana3_0273 | -175 | 4.3 | ATCTGTGACAGTGCTCACCCAA |
| Shewanella sp MR-4 | Shewmr4_0272 | -175 | 4.3 | AACTGTGACAGCGCTCACCCAA |
| Shewanella sp MR-7 | Shewmr7_3749 | -175 | 4.3 | AACTGTGACAGCGCTCACCCAA |
| Shewanella baltica OS155 | Sbal_0283 | -170 | 4.4 | ATCTGTGACAGTCCTCACCTAA |
| Shewanella denitrificans OS217 | Sden_0100 | -130 | 4.6 | TTTTGTGACACAGCTCACCTCA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0081 | -159 | 4.7 | ATTTGTGACTCGACTCACGCTA |
| Shewanella amazonensis SB2B | Sama_3523 | -157 | 4.3 | AATTGTGACGCCGCTCACTCAG |
| Shewanella loihica PV-4 | Shew_0086 | -148 | 4.5 | TAATGTGACACCGCTCACGAAG |
| Shewanella pealeana ATCC 700345 | Spea_4121 | -181 | 4.1 | TTTTGTGACAGTTATCACGGCA |
| Shewanella halifaxensis HAW-EB4 | Shal_0121 | -180 | 4.2 | TTTTGTGACAGTTATCACGCCA |
| Shewanella piezotolerans WP3 | swp_5010 | -176 | 4.4 | TTTTGTGACACTAATCACCTCA |
| Shewanella sediminis HAW-EB3 | Ssed_4403 | -150 | 4.8 | TTTTGTGACACCCCTCACATAC |
| Shewanella woodyi ATCC 51908 | Swoo_4794 | -135 | 4.7 | TTTTGTGACGACACTCACATTC |
|
Position: -222
Score: 4.3 Sequence: TGGCGTGATAACTGTCACAAAA
Locus tag: Shal_0122
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| Shal_0122 | -222 | 4.3 | TGGCGTGATAACTGTCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: molybdenum cofactor biosynthesis protein MoaA | ||||
| Shewanella oneidensis MR-1 | SO4452 | -220 | 3.8 | TTGGGTGAGCACTGTCACAGAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0389 | -187 | 3.8 | TTGGGTGAGGACTGTCACAGAT |
| Shewanella sp W3-18-1 | Sputw3181_0243 | -187 | 3.8 | TTGGGTGAGGACTGTCACAGAT |
| Shewanella sp ANA-3 | Shewana3_0274 | -187 | 3.8 | TTGGGTGAGCACTGTCACAGAT |
| Shewanella sp MR-4 | Shewmr4_0273 | -187 | 3.9 | TTGGGTGAGCGCTGTCACAGTT |
| Shewanella sp MR-7 | Shewmr7_3748 | -187 | 3.9 | TTGGGTGAGCGCTGTCACAGTT |
| Shewanella baltica OS155 | Sbal_0284 | -187 | 4 | TTAGGTGAGGACTGTCACAGAT |
| Shewanella denitrificans OS217 | Sden_0101 | -186 | 4.3 | TGAGGTGAGCTGTGTCACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0082 | -186 | 4.5 | TAGCGTGAGTCGAGTCACAAAT |
| Shewanella amazonensis SB2B | Sama_3524 | -180 | 4 | CTGAGTGAGCGGCGTCACAATT |
| Shewanella loihica PV-4 | Shew_0087 | -189 | 4.4 | CTTCGTGAGCGGTGTCACATTA |
| Shewanella pealeana ATCC 700345 | Spea_4120 | -222 | 4.1 | TGCCGTGATAACTGTCACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0122 | -222 | 4.3 | TGGCGTGATAACTGTCACAAAA |
| Shewanella piezotolerans WP3 | swp_5009 | -222 | 4.3 | TGAGGTGATTAGTGTCACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_4402 | -221 | 4.4 | GTATGTGAGGGGTGTCACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4793 | -222 | 4.3 | GAATGTGAGTGTCGTCACAAAA |
|
Position: -261
Score: 4.8 Sequence: ATGTGAGATTTGCATCACAATT
Locus tag: Shal_0189
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| Shal_0189 | -261 | 4.8 | ATGTGAGATTTGCATCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Swoo_4104 | ||||
| Ortholog function: choline-glycine betaine transporter | ||||
| Shewanella pealeana ATCC 700345 | Spea_4071 | -261 | 4.6 | ATATGGGAGTTGTATCACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0189 | -261 | 4.8 | ATGTGAGATTTGCATCACAATT |
| Shewanella woodyi ATCC 51908 | Swoo_4104 | -268 | 4.2 | TAATCAGACGTGCATCACATTT |
|
Position: -155
Score: 3.9 Sequence: ATCTAGGATCTAGATCAAATTT
Position: -105
Score: 4.2 Sequence: TATTGTAAACCACGTCGCAAAT
Locus tag: Shal_0192
|
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| Shal_0192 | -155 | 3.9 | ATCTAGGATCTAGATCAAATTT | |
| -105 | 4.2 | TATTGTAAACCACGTCGCAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4700 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO4700 | -154 | 4.5 | AAAAGTGAGCCAGTTCTCAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_0086 | -153 | 4.5 | AAAAGTGAACTAGTTCTCAATT |
| Shewanella sp W3-18-1 | Sputw3181_3979 | -153 | 4.5 | AAAAGTGAACTAGTTCTCAATT |
| Shewanella sp ANA-3 | Shewana3_4052 | -154 | 4.3 | AAAAGCGAACCAGTTCACAATT |
| Shewanella sp MR-4 | Shewmr4_3843 | -95 | 4.4 | AAAAGCGACTCAGTTCACAATT |
| Shewanella sp MR-7 | Shewmr7_3936 | -95 | 4.4 | AAAAGCGACTCAGTTCACAATT |
| Shewanella baltica OS155 | Sbal_0123 | -154 | 4.6 | AAAAGTGAACTCGTTCGCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3875 | -148 | 4 | TAGAGTGACTAAGATCCCAATT |
| Shewanella loihica PV-4 | Shew_3658 | -101 | 3.6 | TATTGCCAAGCGGATCGCAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_0192 | -105 | 4.2 | TATTGTAAACCACGTCGCAAAT |
| Shewanella piezotolerans WP3 | swp_4927 | -104 | 3.7 | TATTGCAAAGCGCCTCGCAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_0144 | -115 | 4.2 | TATTGAGAATTACTTCTCAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_0123 | -153 | 4.3 | TACTTTGACCCAGCTCAAAAAA |
| -78 | 3.9 | AAGCGTTATCATTTACACATTA | ||
|
Position: -192
Score: 4.4 Sequence: ATTTGCGACGTGGTTTACAATA
Position: -142
Score: 4.2 Sequence: AAATTTGATCTAGATCCTAGAT
Locus tag: Shal_0193
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| Shal_0193 | -192 | 4.4 | ATTTGCGACGTGGTTTACAATA | |
| -142 | 4.2 | AAATTTGATCTAGATCCTAGAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: prlC | ||||
| Ortholog function: Oligopeptidase A (EC 3.4.24.70) | ||||
| Shewanella oneidensis MR-1 | SO4699 | -136 | 4.2 | AATTGAGAACTGGCTCACTTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0087 | -178 | 4.3 | AATTGAGAACTAGTTCACTTTT |
| Shewanella sp W3-18-1 | Sputw3181_3978 | -178 | 4.3 | AATTGAGAACTAGTTCACTTTT |
| Shewanella sp ANA-3 | Shewana3_4051 | -136 | 4.6 | AATTGTGAACTGGTTCGCTTTT |
| Shewanella sp MR-4 | Shewmr4_3842 | -136 | 4.3 | AATTGTGAACTGAGTCGCTTTT |
| Shewanella sp MR-7 | Shewmr7_3935 | -136 | 4.3 | AATTGTGAACTGAGTCGCTTTT |
| Shewanella baltica OS155 | Sbal_0124 | -136 | 4.3 | AAATGCGAACGAGTTCACTTTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3874 | -226 | 4 | AATTGGGATCTTAGTCACTCTA |
| Shewanella loihica PV-4 | Shew_3657 | -247 | 3.8 | ATTTGCGATCCGCTTGGCAATA |
| Shewanella pealeana ATCC 700345 | Spea_4065 | -143 | 3.9 | AAACTTGATTAAGATCGCGGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_0193 | -192 | 4.4 | ATTTGCGACGTGGTTTACAATA |
| -142 | 4.2 | AAATTTGATCTAGATCCTAGAT | ||
| Shewanella piezotolerans WP3 | swp_4926 | -311 | 3.7 | ATTTGCGAGGCGCTTTGCAATA |
| -261 | 3.6 | AAAATTGACTTTAGTCAAAGAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0145 | -210 | 4.1 | ATTTGAGAAGTAATTCTCAATA |
| Shewanella woodyi ATCC 51908 | Swoo_0124 | -172 | 4.2 | TTTTTTGAGCTGGGTCAAAGTA |
|
Position: -274
Score: 4.8 Sequence: AAGTGTGACACACATAACATTA
Locus tag: Shal_0219
|
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| Shal_0219 | -274 | 4.8 | AAGTGTGACACACATAACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fixA | ||||
| Ortholog function: electron transfer flavoprotein, beta subunit FixA | ||||
| Shewanella loihica PV-4 | Shew_2677 | -234 | 4.2 | AAATGTGAAGCGTGTAACATCA |
| Shewanella pealeana ATCC 700345 | Spea_4039 | -267 | 5.2 | TTGTGTGATCTGTATAACATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0219 | -274 | 4.8 | AAGTGTGACACACATAACATTA |
| Shewanella piezotolerans WP3 | swp_4939 | -269 | 4.7 | AAGTGTGACGAACATAACATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3230 | -306 | 4.8 | AAGTGTGACCCGCCTAACATTA |
|
Position: -141
Score: 4.1 Sequence: TTTCGTGAGCTTGTTCGAAGAA
Position: -81
Score: 4.3 Sequence: TATTGTGCTCACAGTTACATTT
Locus tag: Shal_0228
|
||||
| Shal_0228 | -141 | 4.1 | TTTCGTGAGCTTGTTCGAAGAA | |
| -81 | 4.3 | TATTGTGCTCACAGTTACATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: swp_4930 | ||||
| Ortholog function: transcriptional regulator, LysR family | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_2509 | -114 | 3.9 | TATTGTGACATATAGATAATAT |
| Shewanella pealeana ATCC 700345 | Spea_4030 | -80 | 3.8 | TATTGTGGCCATAGTTACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0228 | -81 | 4.3 | TATTGTGCTCACAGTTACATTT |
| Shewanella piezotolerans WP3 | swp_4930 | -80 | 4.3 | TAATGTGCCCCAAGTTACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_3221 | -77 | 4.4 | TATTGTGCGCCTGATTACATAT |
|
Position: -177
Score: 5 Sequence: TTTTGTTATACCAATCACATAT
Locus tag: Shal_0297
|
||||
| Shal_0297 | -177 | 5 | TTTTGTTATACCAATCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: menD | ||||
| Ortholog function: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0310 | -90 | 4.2 | ACTTGGGATTAGTTTCACATTA |
| Shewanella sp W3-18-1 | Sputw3181_3898 | -90 | 4.2 | ACTTGGGATTAGTTTCACATTA |
| Shewanella sp ANA-3 | Shewana3_3965 | -287 | 3.8 | AGTTAAGATACAGAGCACATTA |
| -92 | 4.1 | ACTTGAGACTGGTTTCACATTA | ||
| Shewanella sp MR-4 | Shewmr4_3767 | -287 | 3.7 | AGTTAAGATACAGAACACATTA |
| -92 | 4.1 | ACTTGAGACTGGTTTCACATTA | ||
| Shewanella sp MR-7 | Shewmr7_3840 | -287 | 3.8 | AGTTAAGATACAGAGCACATTA |
| -92 | 4 | ACTTGAGACTAGTTTCACATTA | ||
| Shewanella baltica OS155 | Sbal_0178 | -173 | 4 | CAAATTTATCTTTATCACATTT |
| -89 | 4.7 | AGTTGAGATATGTTTCACATTA | ||
| Shewanella pealeana ATCC 700345 | Spea_3971 | -149 | 4 | TTTTGCTACCCTTATCACATAC |
| Shewanella halifaxensis HAW-EB4 | Shal_0297 | -177 | 5 | TTTTGTTATACCAATCACATAT |
| Shewanella piezotolerans WP3 | swp_4792 | -74 | 4.3 | ATATTTGATTCATCTCATATAC |
| Shewanella sediminis HAW-EB3 | Ssed_0226 | -302 | 4.4 | TAAAGTGATCTACAACTCAAAT |
|
Position: -100
Score: 3.6 Sequence: ATAATTGATTTGTATCAATGTT
Locus tag: Shal_0300
|
||||
| Shal_0300 | -100 | 3.6 | ATAATTGATTTGTATCAATGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_0312 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella pealeana ATCC 700345 | Spea_3968 | -127 | 3.4 | TTTTATGATGAATAAAACGTTC |
| Shewanella halifaxensis HAW-EB4 | Shal_0300 | -100 | 3.6 | ATAATTGATTTGTATCAATGTT |
| Shewanella sediminis HAW-EB3 | Ssed_0240 | -100 | 4.1 | TTGTTTGATTTAAATCAAGGTT |
| Shewanella woodyi ATCC 51908 | Swoo_0239 | -92 | 4 | TAACTTGATTTGAATCAATATT |
|
Position: -195
Score: 4.3 Sequence: ATATTTGCTAGACATCACATTG
Position: -141
Score: 5 Sequence: ATTCGTGATGGAAATCAAATTA
Locus tag: Shal_0318
|
||||
| Shal_0318 | -195 | 4.3 | ATATTTGCTAGACATCACATTG | |
| -141 | 5 | ATTCGTGATGGAAATCAAATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pilZ | ||||
| Ortholog function: type IV pilus assembly PilZ | ||||
| Shewanella pealeana ATCC 700345 | Spea_3949 | -129 | 5.2 | AATTGTGATGAAAATCAAATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0318 | -195 | 4.3 | ATATTTGCTAGACATCACATTG |
| -141 | 5 | ATTCGTGATGGAAATCAAATTA | ||
| Shewanella piezotolerans WP3 | swp_4772 | -217 | 4.4 | ATTCGTGCTGAAAATCAAATTT |
|
Position: -42
Score: 5 Sequence: AAGTGTGACGCAGATCACCATT
Locus tag: Shal_0348
|
||||
| Shal_0348 | -42 | 5 | AAGTGTGACGCAGATCACCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Spea_3921 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella pealeana ATCC 700345 | Spea_3921 | -41 | 4.4 | AACTGTGACAAAGATCACTATT |
| Shewanella halifaxensis HAW-EB4 | Shal_0348 | -42 | 5 | AAGTGTGACGCAGATCACCATT |
| Shewanella sediminis HAW-EB3 | Ssed_0288 | -42 | 5 | TCTTGTGATACAGGTCACATTA |
| Shewanella woodyi ATCC 51908 | Swoo_3910 | -48 | 5.2 | AAGTGTGACTTAGATCACACAA |
|
Position: -124
Score: 4.3 Sequence: AAGTTTGTCTTAGATCACATTT
Locus tag: Shal_0387
|
||||
| Shal_0387 | -124 | 4.3 | AAGTTTGTCTTAGATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0355 | ||||
| Ortholog function: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Shewanella oneidensis MR-1 | SO0355 | -84 | 4.4 | TTATTTGCGCTACATCACAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3634 | -84 | 3.8 | CTATTTGCGCAGCATCACAAAA |
| -45 | 3.9 | TAAAGTGATGGGGTAAAAATAA | ||
| Shewanella sp W3-18-1 | Sputw3181_3774 | -84 | 3.8 | CTATTTGCGCAGCATCACAAAA |
| -45 | 3.9 | TAAAGTGATGGGGTAAAAATAA | ||
| Shewanella baltica OS155 | Sbal_0351 | -73 | 3.8 | CTATTTGCGCGGGCTCACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0361 | -51 | 4.3 | TTGTGTTACCTAGCACACATAT |
| Shewanella pealeana ATCC 700345 | Spea_3882 | -124 | 4.3 | AAGTTTGTCTTAGATCACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0387 | -124 | 4.3 | AAGTTTGTCTTAGATCACATTT |
| Shewanella piezotolerans WP3 | swp_0315 | -127 | 3.9 | AAAGTTGTCATAGATCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0331 | -110 | 3.9 | GAATTTGTCATAGATCACATTT |
|
Position: -114
Score: 3.8 Sequence: TTTTGTGCTGTTTTTTATAAAG
Locus tag: Shal_0442
|
||||
| Shal_0442 | -114 | 3.8 | TTTTGTGCTGTTTTTTATAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4232 | ||||
| Ortholog function: long-chain fatty acid transport protein | ||||
| Shewanella oneidensis MR-1 | SO4232 | -202 | 4.4 | AAAAGTGATTTTCGTCACTAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0475 | -195 | 4.6 | AAAAGTGATTTTTATCACTAAA |
| Shewanella sp W3-18-1 | Sputw3181_0378 | -195 | 4.6 | AAAAGTGATTTTTATCACTAAA |
| Shewanella sp ANA-3 | Shewana3_3757 | -201 | 4.6 | AAAAGTGATTTATCTCACTAAA |
| Shewanella sp MR-4 | Shewmr4_3584 | -201 | 4.6 | AAAAGTGATTTATCTCACTAAA |
| Shewanella sp MR-7 | Shewmr7_0372 | -201 | 4.6 | AAAAGTGATTTATCTCACTAAA |
| Shewanella baltica OS155 | Sbal_0390 | -207 | 4.3 | AATGGTGATATTGGTCACTAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3816 | -169 | 4.9 | AAGTTTGATCATGATCACAATT |
| Shewanella pealeana ATCC 700345 | Spea_3824 | -164 | 3.8 | AAGTGTGATCTACTCTGTATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0442 | -114 | 3.8 | TTTTGTGCTGTTTTTTATAAAG |
|
Position: -130
Score: 4.6 Sequence: GATTGTGATCCGTATCAAACAA
Locus tag: Shal_0478
|
||||
| Shal_0478 | -130 | 4.6 | GATTGTGATCCGTATCAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpdA | ||||
| Ortholog function: Dihydrolipoamide dehydrogenase (EC 1.8.1.4) | ||||
| Shewanella oneidensis MR-1 | SO0426 | -113 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella putrefaciens CN-32 | Sputcn32_3415 | -111 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella sp W3-18-1 | Sputw3181_0528 | -111 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella sp ANA-3 | Shewana3_0428 | -113 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella sp MR-4 | Shewmr4_0430 | -113 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella sp MR-7 | Shewmr7_3597 | -113 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella baltica OS155 | Sbal_3911 | -111 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_3775 | -168 | 5.1 | TATTGTGATCGGTTTCAAACAA |
| Shewanella pealeana ATCC 700345 | Spea_0421 | -128 | 4.5 | GATTGTGATCAGCATCAAACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0478 | -130 | 4.6 | GATTGTGATCCGTATCAAACAA |
| Shewanella piezotolerans WP3 | swp_4749 | -113 | 4.5 | GATTGTGATCAGTATCAAACAA |
|
Position: -286
Score: 4.5 Sequence: AAGTATGAATCCGATCACATTT
Locus tag: Shal_0481
|
||||
| Shal_0481 | -286 | 4.5 | AAGTATGAATCCGATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yniC | ||||
| Ortholog function: 2-deoxyglucose-6-phosphate hydrolase YniC | ||||
| Shewanella oneidensis MR-1 | SO0431 | -302 | 3.9 | AAGTATGAATCAGGTCACACTC |
| -118 | 3.8 | TAACGAAATGCTTTTCACAGTA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3410 | -316 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_0533 | -316 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella sp ANA-3 | Shewana3_0432 | -315 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella sp MR-4 | Shewmr4_0436 | -315 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella sp MR-7 | Shewmr7_3593 | -315 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella baltica OS155 | Sbal_3906 | -315 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella denitrificans OS217 | Sden_3378 | -316 | 4 | AAGTATGAATCGGCTCACACTG |
| Shewanella frigidimarina NCIMB 400 | Sfri_3772 | -288 | 4.3 | AAGTATGAATCAGCTCACACTA |
| Shewanella amazonensis SB2B | Sama_0381 | -255 | 4 | AAGTATGAATCAGCTCACACTC |
| Shewanella loihica PV-4 | Shew_3425 | -295 | 4.1 | AAGTATGAATCAGATCACACTC |
| Shewanella pealeana ATCC 700345 | Spea_0424 | -286 | 4.3 | AAGTATGAATCCGATCACACTT |
| -178 | 4.1 | AAACTTGATCTAAATTATATAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0481 | -286 | 4.5 | AAGTATGAATCCGATCACATTT |
| -178 | 3.7 | AACCTTGATCTAAATTATATAA | ||
| Shewanella piezotolerans WP3 | swp_4741 | -283 | 4.4 | AAGTATGAATCAGATCACACTT |
| -177 | 3.7 | AACACTGAGATTAATCACATAA | ||
| -101 | 3.7 | TTTCGTAAAGCTAAACACAATA | ||
| Shewanella sediminis HAW-EB3 | Ssed_0437 | -296 | 4.2 | AAGTTTGAATCAGATCACACTC |
| Shewanella woodyi ATCC 51908 | Swoo_0284 | -296 | 4.2 | AAGTTTGAATCAGATCACACTC |
|
Position: -139
Score: 5 Sequence: AAATGTGATCGGATTCATACTT
Locus tag: Shal_0482
|
||||
| Shal_0482 | -139 | 5 | AAATGTGATCGGATTCATACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnB | ||||
| Ortholog function: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) | ||||
| Shewanella oneidensis MR-1 | SO0432 | -141 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3409 | -141 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella sp W3-18-1 | Sputw3181_0534 | -141 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella sp ANA-3 | Shewana3_0433 | -66 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella sp MR-4 | Shewmr4_0437 | -66 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella sp MR-7 | Shewmr7_3592 | -66 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella baltica OS155 | Sbal_3905 | -66 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella denitrificans OS217 | Sden_3377 | -139 | 4.1 | CAGTGTGAGCCGATTCATACTT |
| -67 | 3.9 | AATTGTTAGCCTTATCACTATG | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3771 | -139 | 4.6 | TAGTGTGAGCTGATTCATACTT |
| Shewanella amazonensis SB2B | Sama_0382 | -138 | 4 | GAGTGTGAGCTGATTCATACTT |
| Shewanella loihica PV-4 | Shew_3424 | -140 | 4.3 | GAGTGTGATCTGATTCATACTT |
| Shewanella pealeana ATCC 700345 | Spea_0425 | -268 | 4 | TTATATAATTTAGATCAAGTTT |
| -160 | 4.8 | AAGTGTGATCGGATTCATACTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0482 | -247 | 3.7 | TTATATAATTTAGATCAAGGTT |
| -139 | 5 | AAATGTGATCGGATTCATACTT | ||
| Shewanella piezotolerans WP3 | swp_4740 | -245 | 3.9 | TTATGTGATTAATCTCAGTGTT |
| -139 | 4.9 | AAGTGTGATCTGATTCATACTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0438 | -141 | 4.4 | GAGTGTGATCTGATTCAAACTT |
| Shewanella woodyi ATCC 51908 | Swoo_0285 | -139 | 4.4 | GAGTGTGATCTGATTCAAACTT |
|
Position: -138
Score: 4.7 Sequence: TTTTGTGACATAGGTAACACAA
Locus tag: Shal_0486
|
||||
| Shal_0486 | -138 | 4.7 | TTTTGTGACATAGGTAACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0439 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO0439 | -34 | 4.4 | ATACGTGATCTGACGCACATCA |
| Shewanella putrefaciens CN-32 | Sputcn32_3403 | -90 | 4.5 | AAATGTGAACCAGAGCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_0540 | -90 | 4.5 | AAATGTGAACCAGAGCACACTC |
| Shewanella sp ANA-3 | Shewana3_0438 | -78 | 4.2 | AAGCGTGAGCTAACGCACACAA |
| Shewanella sp MR-4 | Shewmr4_0442 | -77 | 3.8 | AAGCGTGAACTTAAGCACACTC |
| Shewanella sp MR-7 | Shewmr7_3587 | -77 | 3.8 | AAGCGTGAACTTAAGCACACTC |
| Shewanella baltica OS155 | Sbal_0417 | -93 | 4.8 | AAATGTGACCTAAAGCACATAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_0491 | -135 | 5.2 | TTTTATGATTTAGATCACAAAA |
| Shewanella pealeana ATCC 700345 | Spea_0430 | -137 | 4.8 | TTTTGTGATCTAAGTAGCAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0486 | -138 | 4.7 | TTTTGTGACATAGGTAACACAA |
| Shewanella sediminis HAW-EB3 | Ssed_3193 | -105 | 4.3 | ATTTGTGACCAAGTTCCCAAAC |
| Shewanella woodyi ATCC 51908 | Swoo_0294 | -78 | 3.9 | AAACAGGACGTAGATCACACTT |
|
Position: -50
Score: 3.6 Sequence: ATGTTTGATGCCGTTCAAGGAC
Locus tag: Shal_0487
|
||||
| Shal_0487 | -50 | 3.6 | ATGTTTGATGCCGTTCAAGGAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purD | ||||
| Ortholog function: Phosphoribosylamine--glycine ligase (EC 6.3.4.13) | ||||
| Shewanella oneidensis MR-1 | SO0441 | -180 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3402 | -193 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0541 | -193 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella sp ANA-3 | Shewana3_0440 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sp MR-4 | Shewmr4_0444 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sp MR-7 | Shewmr7_3585 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella baltica OS155 | Sbal_0419 | -195 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0492 | -195 | 3.9 | TATTGTGAAATCACACAGAAAA |
| Shewanella amazonensis SB2B | Sama_0394 | -194 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella loihica PV-4 | Shew_3413 | -182 | 4 | TATTGTGAAATCGCACAGAAAA |
| Shewanella pealeana ATCC 700345 | Spea_0431 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0487 | -182 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella piezotolerans WP3 | swp_4725 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0443 | -282 | 4 | GAGTGTGACGCTCTGCACAAAT |
| -191 | 4.2 | TATTGTGAAATCGTGCAGAAAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0295 | -192 | 3.6 | TATTGTGAAATCACATATAAAT |
|
Position: -182
Score: 4.1 Sequence: TATTGTGAAATCGCGCAGAAAA
Locus tag: Shal_0488
|
||||
| Shal_0488 | -182 | 4.1 | TATTGTGAAATCGCGCAGAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purH | ||||
| Ortholog function: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) | ||||
| Shewanella oneidensis MR-1 | SO0442 | -180 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3401 | -193 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0542 | -193 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella sp ANA-3 | Shewana3_0441 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sp MR-4 | Shewmr4_0445 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sp MR-7 | Shewmr7_3584 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella baltica OS155 | Sbal_0420 | -195 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0493 | -195 | 3.9 | TATTGTGAAATCACACAGAAAA |
| Shewanella amazonensis SB2B | Sama_0395 | -194 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella loihica PV-4 | Shew_3412 | -182 | 4 | TATTGTGAAATCGCACAGAAAA |
| Shewanella pealeana ATCC 700345 | Spea_0432 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0488 | -182 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella piezotolerans WP3 | swp_4724 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0444 | -282 | 4 | GAGTGTGACGCTCTGCACAAAT |
| -191 | 4.2 | TATTGTGAAATCGTGCAGAAAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0296 | -192 | 3.6 | TATTGTGAAATCACATATAAAT |
|
Position: -137
Score: 4 Sequence: AAGCATGATCCCCTTCACGCTA
Locus tag: Shal_0532
|
||||
| Shal_0532 | -137 | 4 | AAGCATGATCCCCTTCACGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_0539 | ||||
| Ortholog function: mechanosensitive ion channel | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0539 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella putrefaciens CN-32 | Sputcn32_0539 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp W3-18-1 | Sputw3181_3633 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp W3-18-1 | Sputw3181_3633 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp ANA-3 | Shewana3_3684 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp ANA-3 | Shewana3_3684 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp MR-4 | Shewmr4_3509 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp MR-4 | Shewmr4_3509 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp MR-7 | Shewmr7_0443 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp MR-7 | Shewmr7_0443 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella baltica OS155 | Sbal_3856 | -95 | 4.5 | TTACATGATACGCTTCACACAT |
| Shewanella baltica OS155 | Sbal_3856 | -95 | 4.5 | TTACATGATACGCTTCACACAT |
| Shewanella loihica PV-4 | Shew_3394 | -144 | 4.1 | TTGCTTGATATGCTTCACGCTA |
| Shewanella loihica PV-4 | Shew_3394 | -144 | 4.1 | TTGCTTGATATGCTTCACGCTA |
| Shewanella pealeana ATCC 700345 | Spea_0457 | -138 | 4.1 | AAGCTTGATCCTCTTCACGCTA |
| Shewanella pealeana ATCC 700345 | Spea_0457 | -138 | 4.1 | AAGCTTGATCCTCTTCACGCTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0532 | -137 | 4 | AAGCATGATCCCCTTCACGCTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0532 | -137 | 4 | AAGCATGATCCCCTTCACGCTA |
| Shewanella sediminis HAW-EB3 | Ssed_0457 | -154 | 4.2 | ATTCATGATCCACTTCACCTAG |
| Shewanella sediminis HAW-EB3 | Ssed_0457 | -154 | 4.2 | ATTCATGATCCACTTCACCTAG |
| Shewanella woodyi ATCC 51908 | Swoo_4512 | -127 | 3.9 | ATTCATGATCCTCTTCACGCAG |
| Shewanella woodyi ATCC 51908 | Swoo_4512 | -127 | 3.9 | ATTCATGATCCTCTTCACGCAG |
|
Position: -96
Score: 3.8 Sequence: TAGCGTGAAGGGGATCATGCTT
Locus tag: Shal_0533
|
||||
| Shal_0533 | -96 | 3.8 | TAGCGTGAAGGGGATCATGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4138 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO4138 | -96 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0540 | -97 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella sp W3-18-1 | Sputw3181_3632 | -97 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella sp ANA-3 | Shewana3_3683 | -96 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella sp MR-4 | Shewmr4_3508 | -96 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella sp MR-7 | Shewmr7_0444 | -96 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella baltica OS155 | Sbal_3855 | -97 | 4.3 | ATGTGTGAAGCGTATCATGTAA |
| Shewanella loihica PV-4 | Shew_3393 | -109 | 3.9 | TAGCGTGAAGCATATCAAGCAA |
| Shewanella pealeana ATCC 700345 | Spea_0458 | -96 | 3.8 | TAGCGTGAAGAGGATCAAGCTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0533 | -96 | 3.8 | TAGCGTGAAGGGGATCATGCTT |
|
Position: -97
Score: 4.6 Sequence: CAATTTGATCGATATCACGTTT
Locus tag: Shal_0534
|
||||
| Shal_0534 | -97 | 4.6 | CAATTTGATCGATATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4134 | ||||
| Ortholog function: Protein of unknown function DUF465 | ||||
| Shewanella oneidensis MR-1 | SO4134 | -91 | 4.7 | AATATTGATCCAGATCACGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0542 | -89 | 4.7 | AATATTGATCTAAGTCACAATT |
| Shewanella sp W3-18-1 | Sputw3181_3630 | -89 | 4.7 | AATATTGATCTAAGTCACAATT |
| Shewanella sp ANA-3 | Shewana3_3681 | -91 | 4.6 | AATATTGATCCATATCACGTTT |
| Shewanella sp MR-4 | Shewmr4_3506 | -205 | 4 | AAGTGTGAGCCAGATCTAACTC |
| -91 | 4.6 | AATATTGATCCAAATCACGTTT | ||
| Shewanella sp MR-7 | Shewmr7_0446 | -205 | 4 | AAGTGTGAGCCAGATCTAACTC |
| -91 | 4.6 | AATATTGATCCAAATCACGTTT | ||
| Shewanella baltica OS155 | Sbal_3853 | -206 | 3.8 | AAGTGTGAACCAGATCCTAATC |
| -92 | 5 | AAGAGTGATCTAAGTCACATTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3404 | -219 | 4.7 | TAACGTGATTTACATCAAGTTA |
| -81 | 3.8 | CATTGTTATTGGAATAACATCT | ||
| Shewanella amazonensis SB2B | Sama_0411 | -89 | 4.5 | CTTAGTGATCCGGATCACTTTT |
| Shewanella pealeana ATCC 700345 | Spea_0459 | -99 | 4.9 | CTATTTGATCGATATCACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0534 | -97 | 4.6 | CAATTTGATCGATATCACGTTT |
| Shewanella piezotolerans WP3 | swp_4703 | -306 | 4 | TAAGGTTAACCTGATCACACTT |
| -88 | 4.8 | AAACATGATCTAACTCACAAAT | ||
|
Position: -92
Score: 4.6 Sequence: AAGTGTGATCAGTTTAACCTTT
Locus tag: Shal_0535
|
||||
| Shal_0535 | -92 | 4.6 | AAGTGTGATCAGTTTAACCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: udp | ||||
| Ortholog function: Uridine phosphorylase (EC 2.4.2.3) | ||||
| Shewanella oneidensis MR-1 | SO4133 | -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC |
| Shewanella putrefaciens CN-32 | Sputcn32_0543 | -230 | 4.4 | AAGTTAGATCTGGTTCACACTT |
| -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC | ||
| Shewanella sp W3-18-1 | Sputw3181_3629 | -230 | 4.4 | AAGTTAGATCTGGTTCACACTT |
| -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC | ||
| Shewanella sp ANA-3 | Shewana3_3680 | -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC |
| Shewanella sp MR-4 | Shewmr4_3505 | -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC |
| Shewanella sp MR-7 | Shewmr7_0447 | -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC |
| Shewanella baltica OS155 | Sbal_3852 | -229 | 3.8 | GATTAGGATCTGGTTCACACTT |
| -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC | ||
| Shewanella denitrificans OS217 | Sden_3074 | -92 | 4.4 | AACTGTGATGAAGTTAACCAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3403 | -244 | 4.7 | TAACTTGATGTAAATCACGTTA |
| -92 | 4.8 | ATATGTGATCAAGTTAACCTTA | ||
| Shewanella amazonensis SB2B | Sama_0412 | -92 | 4.7 | ATTCGTGATCCAGTTAACCTTA |
| Shewanella loihica PV-4 | Shew_3390 | -92 | 4.6 | AAGTGTGATCAGGTTAACCTTA |
| Shewanella pealeana ATCC 700345 | Spea_0460 | -92 | 4.7 | AAGTGTGATCGGCTTAACCTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0535 | -92 | 4.6 | AAGTGTGATCAGTTTAACCTTT |
| Shewanella piezotolerans WP3 | swp_4702 | -310 | 4.7 | ATTTGTGAGTTAGATCATGTTT |
| -92 | 4.6 | AAGTGTGATCAGGTTAACCTTA | ||
| Shewanella sediminis HAW-EB3 | Ssed_0461 | -92 | 4.7 | AAGTGTGATCGAGCTAACCTTT |
| Shewanella sediminis HAW-EB3 | Ssed_2504 | -84 | 3.9 | CAATGTAATATGCAAAACATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4509 | -272 | 4.9 | AAATGTGATGTGGGTCAACAAA |
| -92 | 4.7 | AAGTGTGATCAAGTTAACCTTA | ||
|
Position: -340
Score: 4.3 Sequence: TTTTGTGACCTCTCTAGCCTTT
Locus tag: Shal_0551
|
||||
| Shal_0551 | -340 | 4.3 | TTTTGTGACCTCTCTAGCCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mccA | ||||
| Ortholog function: cytochrome c, putative | ||||
| Shewanella pealeana ATCC 700345 | Spea_0479 | -341 | 4.2 | TTTTGTGACCTCTCTATCCTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0551 | -340 | 4.3 | TTTTGTGACCTCTCTAGCCTTT |
| Shewanella sediminis HAW-EB3 | Ssed_0482 | -331 | 4.3 | TTTTGTGACCCCGTTAGCCTTT |
| Shewanella woodyi ATCC 51908 | Swoo_4477 | -342 | 4.2 | TTTTGTGACCTCTCTATCCTTT |
| -87 | 3.9 | AATTGTTAAGTTGTTCAGCTAA | ||
|
Position: -262
Score: 3.9 Sequence: AGTTGTGATTTTTATATCTAAA
Position: -159
Score: 4.1 Sequence: AAGTGTGCTGTAGCGCAGATTT
Locus tag: Shal_0567
|
||||
| Shal_0567 | -262 | 3.9 | AGTTGTGATTTTTATATCTAAA | |
| -159 | 4.1 | AAGTGTGCTGTAGCGCAGATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mccA | ||||
| Ortholog function: cytochrome c, putative | ||||
| Shewanella pealeana ATCC 700345 | Spea_0503 | -286 | 3.9 | TTTTGCGATTTAAAAAACGTAA |
| -264 | 3.9 | AGTTGTGATTTTTATATCTAAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0567 | -284 | 3.8 | TTTTGCGATTCAAAAAACGTTA |
| -262 | 3.9 | AGTTGTGATTTTTATATCTAAA | ||
| -159 | 4.1 | AAGTGTGCTGTAGCGCAGATTT | ||
| Shewanella piezotolerans WP3 | swp_4657 | -246 | 4.1 | TTATGTGCTCTAGCGCATGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_0493 | -324 | 4 | TATTGTGACCCACTCAAGATTT |
| -233 | 3.7 | TTTTTTGAAATGTTTAACCTAC | ||
| -158 | 4.2 | AAGTGTGCTTTGAAGCAAATTT | ||
| Shewanella woodyi ATCC 51908 | Swoo_4456 | -160 | 4 | AAGTGTGCTTTAGCGCAGATTT |
|
Position: -289
Score: 3.8 Sequence: AAGTGTGATCTAGATCTGTTAC
Position: -134
Score: 3.7 Sequence: GAATATGATCAAGCTCAACAAT
Locus tag: Shal_0616
|
||||
| Shal_0616 | -289 | 3.8 | AAGTGTGATCTAGATCTGTTAC | |
| -134 | 3.7 | GAATATGATCAAGCTCAACAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4142 | ||||
| Ortholog function: cytochrome c family protein | ||||
| Shewanella oneidensis MR-1 | SO4142 | -121 | 3.9 | GAAAGTGACACACCTCAAATAA |
| Shewanella sp ANA-3 | Shewana3_3688 | -118 | 4.2 | GAAAGTGATACACCTCAAATAA |
| Shewanella sp MR-4 | Shewmr4_3511 | -118 | 4.2 | GAAAGTGATACACCTCAAATAA |
| Shewanella sp MR-7 | Shewmr7_0441 | -122 | 4 | GAAGGTGATACACCTCAAATAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3554 | -112 | 4 | GGATATGATCTACTTCAAATTA |
| Shewanella amazonensis SB2B | Sama_3178 | -268 | 3.9 | AAACGTCACATAGATCACACAC |
| Shewanella loihica PV-4 | Shew_0516 | -113 | 4.1 | GAAGGTGATCAACATCAAATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0616 | -289 | 3.8 | AAGTGTGATCTAGATCTGTTAC |
| Shewanella piezotolerans WP3 | swp_4577 | -133 | 4 | GAAAGTGATCGAGCTCAACTAT |
| Shewanella sediminis HAW-EB3 | Ssed_4058 | -112 | 4.7 | AAAGGTGATCAACATCAAATTT |
|
Position: -150
Score: 4.4 Sequence: AAACATGATCTAGTCCACAATT
Locus tag: Shal_0676
|
||||
| Shal_0676 | -150 | 4.4 | AAACATGATCTAGTCCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp35 | ||||
| Ortholog function: outer membrane porin | ||||
| Shewanella oneidensis MR-1 | SO3896 | -67 | 4.1 | AAATGTGTTAAACCACACAAAA |
| Shewanella sp ANA-3 | Shewana3_0733 | -67 | 4.1 | AAATGTGTTAAACCACACAAAA |
| Shewanella sp MR-4 | Shewmr4_3228 | -67 | 3.7 | AAATGTGTAAAACCACACAAAA |
| Shewanella sp MR-7 | Shewmr7_0761 | -67 | 3.7 | AAATGTGTAAAACCACACAAAA |
| Shewanella baltica OS155 | Sbal_3570 | -67 | 3.6 | AAATGCGTTAAACCACACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0503 | -145 | 4.5 | TTATTTGATCTAGGCCACACTA |
| Shewanella loihica PV-4 | Shew_3260 | -150 | 4.1 | AAATTTGATCTGCGCCACACTC |
| Shewanella pealeana ATCC 700345 | Spea_0589 | -150 | 4.4 | AAACATGATCTAGTCCACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_0676 | -150 | 4.4 | AAACATGATCTAGTCCACAATT |
| Shewanella piezotolerans WP3 | swp_4514 | -150 | 4.1 | AAACTTGATCTAGCCCACAATC |
| Shewanella sediminis HAW-EB3 | Ssed_4009 | -151 | 4.4 | AAACATGATCTAGTCCACAATT |
| Shewanella woodyi ATCC 51908 | Swoo_4152 | -241 | 3.3 | AATTATTAACTCTTTCTTAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_4151 | -149 | 4.3 | AAGTTTGATCTAGTCCACAATC |
|
Position: -253
Score: 4.8 Sequence: GTTTGTGATGTCTATCACGTTT
Locus tag: Shal_0678
|
||||
| Shal_0678 | -253 | 4.8 | GTTTGTGATGTCTATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3895 | ||||
| Ortholog function: HesA/MoeB/ThiF family protein related to EC-YgdL | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0780 | -317 | 4.9 | AAATGCGATATAGATCACAAAC |
| Shewanella sp W3-18-1 | Sputw3181_3395 | -317 | 4.9 | AAATGCGATATAGATCACAAAC |
| Shewanella sp ANA-3 | Shewana3_0735 | -308 | 4.5 | AAATGTGATCTTGATCACTTGA |
| Shewanella sp MR-4 | Shewmr4_3226 | -309 | 3.9 | AAATGTGATCTGGATCATTGGA |
| Shewanella sp MR-7 | Shewmr7_0763 | -309 | 3.9 | AAATGTGATCTGGATCATTGGA |
| Shewanella baltica OS155 | Sbal_3568 | -321 | 5 | AAGTGTGATCTGGATCAAGTTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0504 | -251 | 4 | TATCTTGATGAGTTTAACCAAT |
| Shewanella amazonensis SB2B | Sama_0546 | -214 | 4.8 | AAGTGTGATCACTATCACATCA |
| Shewanella loihica PV-4 | Shew_3251 | -226 | 4.6 | AGGTGTGATCCGTGTCGCAAAT |
| -196 | 3.8 | TTACGTGAGTTTTATCATGTTG | ||
| Shewanella pealeana ATCC 700345 | Spea_0591 | -259 | 4.3 | ATGTGTGACGCTTGTCACGGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0678 | -253 | 4.8 | GTTTGTGATGTCTATCACGTTT |
| Shewanella piezotolerans WP3 | swp_4512 | -245 | 3.8 | CGATGTGATCTTGATCTGGTTT |
| -215 | 3.9 | ATGTGTGATATTAATCATAGGT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4007 | -324 | 5 | TTTTGTGATTCTTATCACGCAT |
| -294 | 4.6 | TTGTGTGATATCAATCATCTTT | ||
| -200 | 3.8 | TTTTGTGAACTTGATTAACAAG | ||
| Shewanella woodyi ATCC 51908 | Swoo_4150 | -290 | 5.1 | CTTTGTGATATCAATCACAATA |
|
Position: -79
Score: 3.9 Sequence: GTTTTTGACTAAGATCAAAAAA
Locus tag: Shal_0680
|
||||
| Shal_0680 | -79 | 3.9 | GTTTTTGACTAAGATCAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_0777 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0777 | -140 | 4.5 | AAACTTGATTCGTGTCACACAA |
| Shewanella sp W3-18-1 | Sputw3181_3398 | -140 | 4.5 | AAACTTGATTCGTGTCACACAA |
| Shewanella sp ANA-3 | Shewana3_0738 | -140 | 4.4 | AAATTTGAACCACATCACACAG |
| Shewanella frigidimarina NCIMB 400 | Sfri_0507 | -129 | 4.2 | TTTTGTGAGCTAATTGGCAATT |
| Shewanella amazonensis SB2B | Sama_0549 | -139 | 4.3 | AAAGTTGATTCACATCAAATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0680 | -79 | 3.9 | GTTTTTGACTAAGATCAAAAAA |
| Shewanella piezotolerans WP3 | swp_4510 | -64 | 4.1 | AAACGTGATCAACAGCATCTTT |
| Shewanella woodyi ATCC 51908 | Swoo_4146 | -81 | 3.9 | TTTATTGATCGAGATCAGCTTA |
|
Position: -287
Score: 4.4 Sequence: TATTGTGACAAGACTCAACTTA
Locus tag: Shal_0693
|
||||
| Shal_0693 | -287 | 4.4 | TATTGTGACAAGACTCAACTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_1188 | ||||
| Ortholog function: iron-sulfur cluster-binding protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1188 | -111 | 4.4 | AAATGTGACGCAGGTTAAAAAT |
| Shewanella sp W3-18-1 | Sputw3181_2976 | -111 | 4.4 | AAATGTGACGCAGGTTAAAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_0693 | -287 | 4.4 | TATTGTGACAAGACTCAACTTA |
| -110 | 4 | AATTGTGACCACAATCAATTTG | ||
|
Position: -174
Score: 4.2 Sequence: ATCTGTGAATCAGATCACCATG
Locus tag: Shal_0716
|
||||
| Shal_0716 | -174 | 4.2 | ATCTGTGAATCAGATCACCATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napD | ||||
| Ortholog function: periplasmic nitrate reductase component NapD | ||||
| Shewanella oneidensis MR-1 | SO0849 | -260 | 3.9 | TAATGTGATTGGTATAAACCTC |
| -150 | 3.9 | AACTTTGATCCCGATCGACTAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3147 | -147 | 3.9 | AACTTTGATCCCGATCGACTAT |
| Shewanella sp W3-18-1 | Sputw3181_0796 | -147 | 3.9 | AACTTTGATCCCGATCGACTAT |
| Shewanella sp ANA-3 | Shewana3_3429 | -149 | 3.9 | AACTTTGATCCCGATCGACTAT |
| Shewanella sp MR-4 | Shewmr4_0705 | -149 | 3.9 | AACTTTGATCCCGATCGACTAT |
| Shewanella sp MR-7 | Shewmr7_3317 | -149 | 3.9 | AACTTTGATCCCGATCGACTAT |
| Shewanella baltica OS155 | Sbal_3510 | -150 | 4 | AACTTTGATCCGGATCGACTAT |
| Shewanella loihica PV-4 | Shew_3205 | -154 | 3.8 | AACTTTGATCTCGATCTACAAA |
| Shewanella pealeana ATCC 700345 | Spea_0624 | -173 | 4.3 | ATTTGTGAACTAGATCAACACT |
| Shewanella halifaxensis HAW-EB4 | Shal_0716 | -174 | 4.2 | ATCTGTGAATCAGATCACCATG |
| Shewanella sediminis HAW-EB3 | Ssed_3956 | -187 | 4.1 | ATCTGAGACATAGGTCACACAT |
| Shewanella woodyi ATCC 51908 | Swoo_4109 | -179 | 4.4 | AAATGTGAACTCCATCACGCAC |
| -155 | 3.9 | AATATTGATCTTGATCGACTAA | ||
|
Position: -146
Score: 4.1 Sequence: CGATATGATTTAGATCACTTTT
Position: -81
Score: 4.9 Sequence: AATAGTGATGCAGATCACACTG
Locus tag: Shal_0787
|
||||
| Shal_0787 | -146 | 4.1 | CGATATGATTTAGATCACTTTT | |
| -81 | 4.9 | AATAGTGATGCAGATCACACTG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3987 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3987 | -83 | 3.9 | TCTTGTGAGCGAGTTCACGCCT |
| Shewanella putrefaciens CN-32 | Sputcn32_0679 | -83 | 4 | TCTTGTGAGCCAGTTCACGCCT |
| Shewanella sp W3-18-1 | Sputw3181_3492 | -83 | 4 | TCTTGTGAGCCAGTTCACGCCT |
| Shewanella sp ANA-3 | Shewana3_0651 | -83 | 4 | TCTTGTGAGCCAGTTCACGCCT |
| Shewanella sp MR-4 | Shewmr4_0652 | -83 | 4.1 | TCTTGTGACCTAGTTCACGCCT |
| Shewanella sp MR-7 | Shewmr7_3370 | -83 | 4.1 | TCTTGTGACCTAGTTCACGCCT |
| Shewanella baltica OS155 | Sbal_0787 | -277 | 3.7 | TAAAGCGATATATGTAACAAAC |
| Shewanella amazonensis SB2B | Sama_0602 | -307 | 4.1 | AAATTGAATATGGATCACATTT |
| Shewanella loihica PV-4 | Shew_0778 | -147 | 5.1 | AGATTTGATGTAAATCACATTT |
| -82 | 4.4 | TAAAGTGACCTGTCTCACACCT | ||
| Shewanella pealeana ATCC 700345 | Spea_0734 | -147 | 4.1 | CGATATGATTTGGATCACTTTT |
| -82 | 4.2 | AATAGTGATATACATCACAAGG | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0787 | -81 | 4.9 | AATAGTGATGCAGATCACACTG |
| Shewanella piezotolerans WP3 | swp_4346 | -4 | 4.6 | TACTGTGATCGATATCACGTCT |
| Shewanella sediminis HAW-EB3 | Ssed_0816 | -321 | 3.9 | AAACTCAATATAGTTCACATTT |
| -147 | 3.9 | GGATATGATCTAAATCACACTG | ||
| Shewanella woodyi ATCC 51908 | Swoo_3763 | -82 | 4.3 | TTGTGTGACCTGCATCACGCCA |
|
Position: -248
Score: 3.8 Sequence: ATTTATAATGATAATCACAACT
Locus tag: Shal_0790
|
||||
| Shal_0790 | -248 | 3.8 | ATTTATAATGATAATCACAACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: asnC | ||||
| Ortholog function: regulatory protein AsnC | ||||
| Shewanella sp ANA-3 | Shewana3_0798 | -156 | 4.2 | AAAGGTGACGAGTATAACAAAA |
| Shewanella sp MR-4 | Shewmr4_3140 | -156 | 4.2 | AAAGGTGACGAGTATAACAAAA |
| Shewanella sp MR-7 | Shewmr7_0826 | -156 | 4.2 | AAAGGTGACGAGTATAACAAAA |
| Shewanella denitrificans OS217 | Sden_3049 | -175 | 4 | TAATGTGATTGGTATAAGAACA |
| Shewanella pealeana ATCC 700345 | Spea_0737 | -161 | 4.3 | TATCGATATCTGCCTCACATAT |
| -7 | 3.8 | ATTTATTATGGAAGTCCCATTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0790 | -248 | 3.8 | ATTTATAATGATAATCACAACT |
| Shewanella piezotolerans WP3 | swp_4340 | -322 | 3.9 | TAATGCAATTGGTATTACAATA |
| Shewanella woodyi ATCC 51908 | Swoo_0916 | -67 | 3.7 | TATTTTTACTTGCCTCAACTAA |
|
Position: -36
Score: 4.3 Sequence: AAATGGGATGTAAATAACGTAA
Locus tag: Shal_0814
|
||||
| Shal_0814 | -36 | 4.3 | AAATGGGATGTAAATAACGTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sden_0863 | ||||
| Ortholog function: Nitroreductase family protein | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_0814 | -36 | 4.3 | AAATGGGATGTAAATAACGTAA |
|
Position: -160
Score: 4.3 Sequence: TTAAGCGATCTAGCTCTCAATT
Locus tag: Shal_0823
|
||||
| Shal_0823 | -160 | 4.3 | TTAAGCGATCTAGCTCTCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0919 | ||||
| Ortholog function: Serine transporter, putative | ||||
| Shewanella baltica OS155 | Sbal_0765 | -280 | 4.1 | TTTTGTGATCTAGATCCAATCC |
| -139 | 4 | ATCAGCGATCTAGATCTCAATA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0688 | -146 | 4.1 | ATAGTTGATTCAGAACACATTA |
| Shewanella pealeana ATCC 700345 | Spea_0771 | -161 | 4.2 | TTAAGAGATCTAGCTCTCAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_0823 | -160 | 4.3 | TTAAGCGATCTAGCTCTCAATT |
|
Position: -215
Score: 4.1 Sequence: TGTTTTGAGCGGTTGCACATAA
Position: -117
Score: 4.4 Sequence: TAGTGTGCTAGACCTCACGAAA
Locus tag: Shal_0849
|
||||
| Shal_0849 | -215 | 4.1 | TGTTTTGAGCGGTTGCACATAA | |
| -117 | 4.4 | TAGTGTGCTAGACCTCACGAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cadC | ||||
| Ortholog function: transcriptional regulator-related protein | ||||
| Shewanella oneidensis MR-1 | SO0936 | -117 | 4.6 | TTTATTGATGTAATTCACAGAT |
| Shewanella sp ANA-3 | Shewana3_3347 | -118 | 4.6 | TTTATTGATGTGTTTCACAGAT |
| Shewanella sp MR-4 | Shewmr4_0779 | -118 | 4.5 | TTTATTGATGCATTTCACAGAT |
| Shewanella sp MR-7 | Shewmr7_3244 | -118 | 4.5 | TTTATTGATGCATTTCACAGAT |
| Shewanella loihica PV-4 | Shew_0757 | -115 | 4.3 | TTATGTGCTGATTGTCACGAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0849 | -117 | 4.4 | TAGTGTGCTAGACCTCACGAAA |
| Shewanella piezotolerans WP3 | swp_4239 | -248 | 4.2 | TAACGTGCTAAAGCTCACGAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0879 | -117 | 4.1 | TAACGTGTTCCTTGTCACGAAT |
| Shewanella woodyi ATCC 51908 | Swoo_0881 | -116 | 3.7 | ATATGAGCGCTAAATCACGCTT |
|
Position: -99
Score: 4.1 Sequence: TAATCTGATTGGAATAACCTAT
Locus tag: Shal_0881
|
||||
| Shal_0881 | -99 | 4.1 | TAATCTGATTGGAATAACCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fkpA | ||||
| Ortholog function: FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) | ||||
| Shewanella oneidensis MR-1 | SO1065 | -119 | 4.3 | TAGAGTGAAATTAATCACAGTT |
| Shewanella sp ANA-3 | Shewana3_0903 | -120 | 4.4 | TAGAGTGAGATTAATCACAGTT |
| Shewanella sp MR-4 | Shewmr4_3034 | -120 | 4.4 | TAGAGTGAGATTAATCACAGTT |
| Shewanella sp MR-7 | Shewmr7_0940 | -120 | 4.4 | TAGAGTGAGATTAATCACAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0881 | -99 | 4.1 | TAATCTGATTGGAATAACCTAT |
| Shewanella sediminis HAW-EB3 | Ssed_0918 | -96 | 3.9 | CAATGTAATTGGAATAACGTAT |
| Shewanella woodyi ATCC 51908 | Swoo_0968 | -95 | 4.2 | TAATGTAATTGGAATATCATAT |
|
Position: -111
Score: 4.3 Sequence: GAATGTGTTGTTGCTCACACTT
Locus tag: Shal_0885
|
||||
| Shal_0885 | -111 | 4.3 | GAATGTGTTGTTGCTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narQ | ||||
| Ortholog function: Nitrate/nitrite sensor protein (EC 2.7.3.-) | ||||
| Shewanella oneidensis MR-1 | SO3981 | -174 | 3.7 | AAGTTTGCGCTAGATCAAAATG |
| -151 | 4.5 | AATAGTGTTGTTGTTCACACTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0684 | -114 | 4.5 | AATAGTGTTGTTGTTCACACTT |
| Shewanella sp W3-18-1 | Sputw3181_3487 | -114 | 4.5 | AATAGTGTTGTTGTTCACACTT |
| Shewanella sp ANA-3 | Shewana3_0657 | -138 | 3.7 | AAGTTTGCGCTAGATCAAAATG |
| -115 | 4.5 | AATAGTGTTGTTGTTCACACTT | ||
| Shewanella sp MR-4 | Shewmr4_0658 | -139 | 3.7 | AAGTTTGCGCTAGATCAAAATG |
| -116 | 4.5 | AATAGTGTTGTTGTTCACACTT | ||
| Shewanella sp MR-7 | Shewmr7_3364 | -139 | 3.7 | AAGTTTGCGCTAGATCAAAATG |
| -116 | 4.5 | AATAGTGTTGTTGTTCACACTT | ||
| Shewanella baltica OS155 | Sbal_0793 | -121 | 3.7 | AAGTTTGCGCTAGATCAAAATG |
| -98 | 4.5 | AAAGGTGTTGTTGTTCACATTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0621 | -140 | 3.9 | AAACAGGATGTATCTCACAGTT |
| Shewanella amazonensis SB2B | Sama_0647 | -112 | 4 | GGATGTGTTATTGTTCACACTT |
| Shewanella loihica PV-4 | Shew_0843 | -136 | 3.9 | AAACTTGAGGCAGATCATAATG |
| -113 | 4.4 | GAATGTGTTGTTGGTCACATTT | ||
| Shewanella pealeana ATCC 700345 | Spea_0830 | -109 | 4 | GAACGTGTTGTTGCTCACACTT |
| -81 | 3.8 | ATTTGTTAATGTAATCAAGTAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0885 | -111 | 4.3 | GAATGTGTTGTTGCTCACACTT |
| Shewanella sediminis HAW-EB3 | Ssed_0930 | -113 | 4.8 | AAATGTGGTGTTGCTCACACTT |
| Shewanella woodyi ATCC 51908 | Swoo_0971 | -112 | 4.8 | AAACGTGTTGTTGCTCACATTT |
|
Position: -152
Score: 4.2 Sequence: AAGTGTGAGCAACAACACATTC
Locus tag: Shal_0886
|
||||
| Shal_0886 | -152 | 4.2 | AAGTGTGAGCAACAACACATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: cytochrome c552 precursor (EC 1.7.2.2) | ||||
| Shewanella oneidensis MR-1 | SO3980 | -149 | 3.9 | AAGTGTGAACAACAACACTATT |
| -126 | 4.1 | CATTTTGATCTAGCGCAAACTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0685 | -149 | 3.9 | AAGTGTGAACAACAACACTATT |
| -126 | 4.1 | CATTTTGATCTGGCGCAAACTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3486 | -149 | 3.9 | AAGTGTGAACAACAACACTATT |
| -126 | 4.1 | CATTTTGATCTGGCGCAAACTT | ||
| Shewanella sp ANA-3 | Shewana3_0658 | -131 | 3.9 | AAGTGTGAACAACAACACTATT |
| -108 | 4.1 | CATTTTGATCTAGCGCAAACTT | ||
| Shewanella sp MR-4 | Shewmr4_0659 | -131 | 3.9 | AAGTGTGAACAACAACACTATT |
| -108 | 4.1 | CATTTTGATCTAGCGCAAACTT | ||
| Shewanella sp MR-7 | Shewmr7_3363 | -131 | 3.9 | AAGTGTGAACAACAACACTATT |
| -108 | 4.1 | CATTTTGATCTAGCGCAAACTT | ||
| Shewanella baltica OS155 | Sbal_0794 | -149 | 4.4 | AAATGTGAACAACAACACCTTT |
| -126 | 4.1 | CATTTTGATCTAGCGCAAACTT | ||
| Shewanella loihica PV-4 | Shew_0844 | -156 | 4.5 | AAATGTGACCAACAACACATTC |
| -133 | 4.2 | CATTATGATCTGCCTCAAGTTT | ||
| Shewanella pealeana ATCC 700345 | Spea_0831 | -183 | 4 | ATACTTGATTACATTAACAAAT |
| -155 | 3.8 | AAGTGTGAGCAACAACACGTTC | ||
| -71 | 4.1 | ATAAGTGATTAAATTCAACCTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0886 | -152 | 4.2 | AAGTGTGAGCAACAACACATTC |
| Shewanella piezotolerans WP3 | swp_3958 | -150 | 4 | AAATGTGAGCAACAACACGTTC |
| Shewanella sediminis HAW-EB3 | Ssed_0931 | -154 | 4.6 | AAGTGTGAGCAACACCACATTT |
| -131 | 3.9 | CATTTTGATCTACCGCATACTT | ||
| Shewanella woodyi ATCC 51908 | Swoo_0972 | -154 | 4.4 | AAATGTGAGCAACAACACGTTT |
|
Position: -328
Score: 4 Sequence: TTTTGTGATTCAGATCCATCTT
Locus tag: Shal_0902
|
||||
| Shal_0902 | -328 | 4 | TTTTGTGATTCAGATCCATCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argR | ||||
| Ortholog function: arginine pathway regulatory protein ArgR, repressor of arg regulon | ||||
| Shewanella oneidensis MR-1 | SO0769 | -266 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3220 | -259 | 4.2 | ATGTGTGACATGGATCTAGTTT |
| Shewanella sp W3-18-1 | Sputw3181_0721 | -259 | 4.2 | ATGTGTGACATGGATCTAGTTT |
| Shewanella sp ANA-3 | Shewana3_3510 | -266 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella sp MR-4 | Shewmr4_3340 | -266 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella sp MR-7 | Shewmr7_0613 | -266 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella baltica OS155 | Sbal_0608 | -270 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella amazonensis SB2B | Sama_0671 | -262 | 4 | ATTTGTGAGGTAGATCCTCAAA |
| Shewanella loihica PV-4 | Shew_0866 | -282 | 4.6 | TTATGTGATATAGATCTAGATT |
| Shewanella piezotolerans WP3 | swp_4101 | -140 | 3.8 | ATTTATACTCTACATCATATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0951 | -254 | 3.8 | ATTTTTGTTCTACATCAATAAA |
| Shewanella woodyi ATCC 51908 | Swoo_1001 | -311 | 4.5 | TTTTGTGATGTAGGTCTACATT |
|
Position: -319
Score: 3.8 Sequence: TATCATGATTATTTTCGCCATT
Position: -46
Score: 3.9 Sequence: AAGATGGATCTGAATCACAAAA
Locus tag: Shal_0903
|
||||
| Shal_0903 | -319 | 3.8 | TATCATGATTATTTTCGCCATT | |
| -46 | 3.9 | AAGATGGATCTGAATCACAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mdh | ||||
| Ortholog function: malate dehydrogenase (EC 1.1.1.37) | ||||
| Shewanella oneidensis MR-1 | SO0770 | -47 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella putrefaciens CN-32 | Sputcn32_3219 | -46 | 4 | AAACTAGATCCATGTCACACAT |
| Shewanella sp W3-18-1 | Sputw3181_0722 | -46 | 4 | AAACTAGATCCATGTCACACAT |
| Shewanella sp ANA-3 | Shewana3_3509 | -46 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella sp MR-4 | Shewmr4_3339 | -46 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella sp MR-7 | Shewmr7_0614 | -46 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella baltica OS155 | Sbal_0609 | -46 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3173 | -45 | 4.2 | AATTTAGATCTATGTCACAAAC |
| Shewanella amazonensis SB2B | Sama_0672 | -46 | 3.8 | TTTGAGGATCTACCTCACAAAT |
| Shewanella loihica PV-4 | Shew_0867 | -47 | 4.5 | AATCTAGATCTATATCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0903 | -46 | 3.9 | AAGATGGATCTGAATCACAAAA |
| Shewanella piezotolerans WP3 | swp_4100 | -46 | 3.9 | AAAACAGATCTAAATCACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0952 | -136 | 4.1 | TTTATTGATGTAGAACAAAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_1002 | -47 | 3.8 | AATGTAGACCTACATCACAAAA |
|
Position: -169
Score: 4.5 Sequence: AGTAGTGATCTCGTGCACACAT
Locus tag: Shal_0924
|
||||
| Shal_0924 | -169 | 4.5 | AGTAGTGATCTCGTGCACACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purT | ||||
| Ortholog function: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) | ||||
| Shewanella oneidensis MR-1 | SO3613 | -161 | 3.8 | TAGCTTGATCAAAAACACAGTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1001 | -119 | 3.8 | TAGCTTGATCAAAAACACAGTT |
| Shewanella sp W3-18-1 | Sputw3181_3164 | -119 | 3.8 | TAGCTTGATCAAAAACACAGTT |
| Shewanella sp ANA-3 | Shewana3_3197 | -121 | 3.9 | TAGCTTGATCGAAAACACAGTT |
| Shewanella sp MR-4 | Shewmr4_3020 | -121 | 3.9 | TAGCTTGATCGAAAACACAGTT |
| Shewanella sp MR-7 | Shewmr7_3101 | -121 | 3.9 | TAGCTTGATCGAAAACACAGTT |
| Shewanella pealeana ATCC 700345 | Spea_0871 | -176 | 4.4 | AAGAGTGATCTCGCCCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0924 | -169 | 4.5 | AGTAGTGATCTCGTGCACACAT |
| Shewanella piezotolerans WP3 | swp_4077 | -147 | 4.1 | CAGCGTGATCTGCCGCACGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_0973 | -160 | 4.6 | TAAAGTGATCCACTACACACTT |
|
Position: -163
Score: 4.3 Sequence: ATCTGTGAACCTTGTCGCATTT
Locus tag: Shal_1059
|
||||
| Shal_1059 | -163 | 4.3 | ATCTGTGAACCTTGTCGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sbal_1323 | ||||
| Ortholog function: HTH-type transcriptional regulator BetI | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_1948 | -111 | 4.9 | TGTTGTGATCTATATCAAGTTA |
| Shewanella pealeana ATCC 700345 | Spea_1009 | -164 | 4.1 | ATGCGTGAGGTGAGTCACGCTT |
| -135 | 3.7 | AAGCTTGATCGTTATAACCCTA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1059 | -163 | 4.3 | ATCTGTGAACCTTGTCGCATTT |
| Shewanella piezotolerans WP3 | swp_3809 | -141 | 4.7 | TTCTGTGATTCAGGTCGCAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_1121 | -140 | 4.3 | ATCTGTGATGCAAGTCGCAATC |
|
Position: -210
Score: 4 Sequence: TAAAGTGATTTTTCTTGCAGAT
Position: -78
Score: 3.8 Sequence: TTATTTGAGCTAGCGCTAATTA
Locus tag: Shal_1062
|
||||
| Shal_1062 | -210 | 4 | TAAAGTGATTTTTCTTGCAGAT | |
| -78 | 3.8 | TTATTTGAGCTAGCGCTAATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1326 | ||||
| Ortholog function: COG1242: Predicted Fe-S oxidoreductase | ||||
| Shewanella oneidensis MR-1 | SO1326 | -294 | 4.3 | AATAGTGATTTTTATTGCAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1137 | -293 | 4.3 | AATAGTGATTTTTATTGCAAAT |
| -224 | 4.6 | ATTTGTGAGGTAGATCGCTAAA | ||
| Shewanella sp W3-18-1 | Sputw3181_3027 | -293 | 4.3 | AATAGTGATTTTTATTGCAAAT |
| -224 | 4.3 | GTTTGTGATGTAGATCGCTAAA | ||
| Shewanella sp ANA-3 | Shewana3_3048 | -294 | 4.3 | AATAGTGATTTTTATTGCAAAT |
| Shewanella sp MR-4 | Shewmr4_2870 | -55 | 4.3 | AATAGTGATTTTTATTGCAAAT |
| Shewanella sp MR-7 | Shewmr7_2952 | -55 | 4.3 | AATAGTGATTTTTATTGCAAAT |
| Shewanella baltica OS155 | Sbal_1179 | -293 | 3.9 | AATAGTGATTTTTATTGCAAAC |
| -225 | 4.2 | TGATGTGAGCAATATCTCAATG | ||
| -193 | 4.3 | TAATTTGAGGATGCGCACATTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2950 | -128 | 3.9 | TTTTTTGAGTTTGTGCACAACT |
| Shewanella loihica PV-4 | Shew_1033 | -148 | 4.4 | AAAAGTGATTTTTATTGCATAT |
| -127 | 4 | TACAGTGAATTATTTAACAAAT | ||
| Shewanella pealeana ATCC 700345 | Spea_1014 | -303 | 3.9 | TAAATTGACCTGTATAACCTTA |
| -201 | 4 | TAAAGTGATTTTTTTTGCAGAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1062 | -210 | 4 | TAAAGTGATTTTTCTTGCAGAT |
| Shewanella piezotolerans WP3 | swp_3802 | -111 | 3.8 | TTATTTGAGCTAGCGCTAATAA |
| Shewanella woodyi ATCC 51908 | Swoo_1222 | -229 | 3.8 | AAATATGAGTTCTATTGCAAAT |
|
Position: -89
Score: 4.6 Sequence: ATTTTTGATTCAGTTCACAGTC
Locus tag: Shal_1064
|
||||
| Shal_1064 | -89 | 4.6 | ATTTTTGATTCAGTTCACAGTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1328 | ||||
| Ortholog function: transcriptional regulator, LysR family | ||||
| Shewanella oneidensis MR-1 | SO1328 | -109 | 4 | AAAATCGATTTTGCTCACACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1139 | -109 | 3.8 | AATGGCGATTCTGCTCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_3025 | -109 | 3.9 | AATGGCGATTCGGCTCACACTC |
| Shewanella sp ANA-3 | Shewana3_3046 | -109 | 3.9 | AAAATCGATTTTGCTCACAGTA |
| Shewanella sp MR-4 | Shewmr4_2868 | -109 | 4 | AAAATCGATTTTGCTCACACTA |
| Shewanella sp MR-7 | Shewmr7_2950 | -109 | 4 | AAAATCGATTTTGCTCACACAA |
| Shewanella loihica PV-4 | Shew_1035 | -110 | 3.8 | TTTTGGGCAGCGCTTCACACTT |
| Shewanella pealeana ATCC 700345 | Spea_1016 | -89 | 4.8 | ATTTTTGATTCAGTTCACAAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1064 | -89 | 4.6 | ATTTTTGATTCAGTTCACAGTC |
| Shewanella woodyi ATCC 51908 | Swoo_1224 | -111 | 4.3 | ATTTTAGAGATAGCTCACATTT |
|
Position: -99
Score: 5.1 Sequence: TTATTTGACTTAGATCACAAAT
Locus tag: Shal_1065
|
||||
| Shal_1065 | -99 | 5.1 | TTATTTGACTTAGATCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyaC | ||||
| Ortholog function: Adenylate cyclase (EC 4.6.1.1) | ||||
| Shewanella oneidensis MR-1 | SO1329 | -162 | 4.7 | TGTATTGATCCAGATCACAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1140 | -101 | 4.7 | TGTATTGATCCAGATCACAAAT |
| Shewanella sp W3-18-1 | Sputw3181_3024 | -101 | 4.7 | TGTATTGATCCAGATCACAAAT |
| Shewanella sp ANA-3 | Shewana3_3045 | -162 | 4.4 | TGGATTGATCCAGATCACAAAT |
| Shewanella sp MR-4 | Shewmr4_2867 | -162 | 4.4 | TGGATTGATCCAGATCACAAAT |
| Shewanella sp MR-7 | Shewmr7_2949 | -162 | 4.4 | TGGATTGATCCAGATCACAAAT |
| Shewanella baltica OS155 | Sbal_1182 | -101 | 4.7 | TAGATTGATCCAGATCACAAAT |
| Shewanella denitrificans OS217 | Sden_2784 | -157 | 4.8 | TGAATTGATCTAGATCACATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2947 | -158 | 4.4 | TCTATTGATCTAAATCACAAAT |
| Shewanella amazonensis SB2B | Sama_0861 | -102 | 4.2 | TGAATTGATTCAGATCACGTTA |
| Shewanella loihica PV-4 | Shew_1036 | -162 | 4.6 | TCATTTGACTTAGATCACAAAT |
| Shewanella pealeana ATCC 700345 | Spea_1019 | -100 | 4.6 | TCATTTGACTTAGATCACAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1065 | -99 | 5.1 | TTATTTGACTTAGATCACAAAT |
| Shewanella piezotolerans WP3 | swp_3798 | -98 | 4.6 | TCATTTGACTTAGATCACAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_1130 | -103 | 4.3 | TCATTTGACAAAGATCACAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_1225 | -96 | 4.3 | TCATTTGACTAAGATCACAAAT |
|
Position: -96
Score: 4.3 Sequence: TAAGGTGATCTCTTTCATGTTT
Locus tag: Shal_1103
|
||||
| Shal_1103 | -96 | 4.3 | TAAGGTGATCTCTTTCATGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Shewanella oneidensis MR-1 | SO1363 | -124 | 4.2 | TAAAGTGATCTTTCTCTAAGAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1174 | -124 | 4.3 | TAAGGTGATAACCCTCGCAAAT |
| Shewanella sp W3-18-1 | Sputw3181_2990 | -124 | 4.3 | TAAGGTGATAACCCTCGCAAAT |
| Shewanella sp MR-4 | Shewmr4_2832 | -124 | 4 | TAAGGTGATCTCCCTCTAAGAT |
| Shewanella sp MR-7 | Shewmr7_2914 | -124 | 3.6 | CAAGGTGATCTCTCTCTAAGAT |
| Shewanella baltica OS155 | Sbal_1216 | -124 | 4.1 | TAAGGTGATCGTTCTCTAATAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3609 | -125 | 4 | GAAGGTGATGTGGCTCATAAAA |
| Shewanella amazonensis SB2B | Sama_0895 | -113 | 3.6 | TAAGATGATCTGCTTCAAGGAA |
| Shewanella loihica PV-4 | Shew_1069 | -125 | 4.5 | TAATTTGATCCGCTTCATAGTT |
| Shewanella pealeana ATCC 700345 | Spea_1055 | -125 | 4.5 | AAAAGTGATCTCTTTCATAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1103 | -96 | 4.3 | TAAGGTGATCTCTTTCATGTTT |
| Shewanella piezotolerans WP3 | swp_3762 | -42 | 4.4 | TAAGGTGATCTCTTTCATAGTT |
| Shewanella sediminis HAW-EB3 | Ssed_1165 | -170 | 3.4 | TAATGCAATTGGTATTATAATT |
| Shewanella woodyi ATCC 51908 | Swoo_1260 | -125 | 4.2 | GAATTTGATCTGTCTCAAACTT |
|
Position: -76
Score: 4.6 Sequence: AAACGTGATTTAGATCACGACT
Locus tag: Shal_1108
|
||||
| Shal_1108 | -76 | 4.6 | AAACGTGATTTAGATCACGACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiA-2 | ||||
| Ortholog function: Ribosome hibernation protein YfiA | ||||
| Shewanella oneidensis MR-1 | SO3422 | -78 | 4.7 | AAGTGTGATTTAACTCTCGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2740 | -77 | 5.1 | TTTTGTGATTTAGATCTCGTTT |
| Shewanella sp W3-18-1 | Sputw3181_1272 | -77 | 5.1 | TTTTGTGATTTAGATCTCGTTT |
| Shewanella sp ANA-3 | Shewana3_1133 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella sp MR-4 | Shewmr4_1132 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella sp MR-7 | Shewmr7_1203 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella baltica OS155 | Sbal_1221 | -77 | 5.2 | AAATGTGATCTAGATCTCGTTT |
| Shewanella denitrificans OS217 | Sden_2746 | -77 | 4.8 | AAGTGTGACTTTGATCACGCTT |
| -38 | 4.1 | TAATCTGAAGTTAAGCACATAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2912 | -77 | 5 | AAGTGTGATGCAGATCACTATT |
| Shewanella amazonensis SB2B | Sama_0899 | -78 | 4.3 | AAACGTGATTTTACTCACGACT |
| Shewanella loihica PV-4 | Shew_1073 | -76 | 4.6 | AAAGTTGATCTAGATCACGTTT |
| Shewanella pealeana ATCC 700345 | Spea_1060 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella halifaxensis HAW-EB4 | Shal_4284 | -83 | 4.6 | AAACATGACCTAGATCACACTA |
| -58 | 3.8 | TAATGTGATTGGACTATTGTAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1108 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella piezotolerans WP3 | swp_3757 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella sediminis HAW-EB3 | Ssed_1169 | -222 | 3.8 | TTTTGAGAGGCAAATAAAAAAA |
| -76 | 4.6 | AAACGTGATTTAGATCACGACT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1264 | -76 | 4.5 | AAACGTGATCAAGATCACGACT |
|
Position: -255
Score: 4.9 Sequence: AGTCGTGATCTAAATCACGTTT
Locus tag: Shal_1109
|
||||
| Shal_1109 | -255 | 4.9 | AGTCGTGATCTAAATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3421 | ||||
| Ortholog function: b-type cytochrome, putative | ||||
| Shewanella oneidensis MR-1 | SO3421 | -244 | 4.2 | AAACGAGAGTTAAATCACACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2739 | -242 | 4.8 | AAACGAGATCTAAATCACAAAA |
| Shewanella sp W3-18-1 | Sputw3181_1273 | -242 | 4.8 | AAACGAGATCTAAATCACAAAA |
| Shewanella sp ANA-3 | Shewana3_1134 | -241 | 4.9 | AAACGAGATCTAAATCACATTT |
| Shewanella sp MR-4 | Shewmr4_1133 | -241 | 4.9 | AAACGAGATCTAAATCACATTT |
| Shewanella sp MR-7 | Shewmr7_1204 | -241 | 4.9 | AAACGAGATCTAAATCACATTT |
| Shewanella baltica OS155 | Sbal_1222 | -244 | 5 | AAACGAGATCTAGATCACATTT |
| Shewanella denitrificans OS217 | Sden_2745 | -291 | 4.7 | AAGCGTGATCAAAGTCACACTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2911 | -383 | 5.2 | AATAGTGATCTGCATCACACTT |
| Shewanella amazonensis SB2B | Sama_0900 | -234 | 4.2 | AGTCGTGAGTAAAATCACGTTT |
| Shewanella loihica PV-4 | Shew_1074 | -208 | 4.9 | AAACGTGATCTAGATCAACTTT |
| Shewanella pealeana ATCC 700345 | Spea_1061 | -255 | 4.9 | AGTCGTGATCTAAATCACGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1109 | -255 | 4.9 | AGTCGTGATCTAAATCACGTTT |
| Shewanella piezotolerans WP3 | swp_3756 | -366 | 4.9 | AGTCGTGATCTAAATCACGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1170 | -236 | 4.9 | AGTCGTGATCTAAATCACGTTT |
| Shewanella woodyi ATCC 51908 | Swoo_1265 | -234 | 4.9 | AGTCGTGATCTTGATCACGTTT |
|
Position: -77
Score: 3.8 Sequence: CGGTGCGATCTGTATCACTATT
Locus tag: Shal_1117
|
||||
| Shal_1117 | -77 | 3.8 | CGGTGCGATCTGTATCACTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: swp_3747 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella sp ANA-3 | Shewana3_1142 | -85 | 4.4 | GGATGTGAGTTGCTTCACAATT |
| Shewanella sp ANA-3 | Shewana3_1142 | -85 | 4.4 | GGATGTGAGTTGCTTCACAATT |
| Shewanella sp MR-4 | Shewmr4_1141 | -85 | 5 | AGATGTGACTTGCCTCACAATT |
| Shewanella sp MR-4 | Shewmr4_1141 | -85 | 5 | AGATGTGACTTGCCTCACAATT |
| Shewanella sp MR-7 | Shewmr7_1212 | -85 | 4.4 | GGATGTGACTTGCCTCACAATT |
| Shewanella sp MR-7 | Shewmr7_1212 | -85 | 4.4 | GGATGTGACTTGCCTCACAATT |
| Shewanella baltica OS155 | Sbal_1230 | -78 | 5.5 | AAATGTGATTAAGTTCACAATT |
| Shewanella baltica OS155 | Sbal_1230 | -78 | 5.5 | AAATGTGATTAAGTTCACAATT |
| Shewanella pealeana ATCC 700345 | Spea_1069 | -77 | 4.4 | CTGTGCGATCTGTGTCACAATT |
| Shewanella pealeana ATCC 700345 | Spea_1069 | -77 | 4.4 | CTGTGCGATCTGTGTCACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1117 | -77 | 3.8 | CGGTGCGATCTGTATCACTATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1117 | -77 | 3.8 | CGGTGCGATCTGTATCACTATT |
|
Position: -56
Score: 4.3 Sequence: TATAGTGAGTTATATAAAATTT
Locus tag: Shal_1124
|
||||
| Shal_1124 | -56 | 4.3 | TATAGTGAGTTATATAAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phk | ||||
| Ortholog function: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) | ||||
| Shewanella oneidensis MR-1 | SO3542 | -95 | 4.2 | AATTTGGATGCAGAACACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1051 | -234 | 4 | TCATGTGATCAAGCCTACATTT |
| -95 | 4.1 | AATTTGGATGTAGGGCACATTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3114 | -234 | 4 | TCATGTGATCAAGCCTACATTT |
| -95 | 4.1 | AATTTGGATGTAGGGCACATTT | ||
| Shewanella sp ANA-3 | Shewana3_3145 | -95 | 4 | AATTTGGATGCAGGGCACATTT |
| Shewanella sp MR-4 | Shewmr4_2965 | -95 | 4.3 | AATTTGGATGTAGAACACATTT |
| Shewanella sp MR-7 | Shewmr7_3047 | -95 | 4.3 | AATTTGGATGTAGAACACATTT |
| Shewanella baltica OS155 | Sbal_1046 | -235 | 4.4 | TCATGTGATCAAGCTCGCGTTT |
| -96 | 4.1 | AATTTGGATGTAGGGCACATTT | ||
| Shewanella denitrificans OS217 | Sden_2731 | -233 | 5 | CTTAGTGATCCAGTTCACATTA |
| -94 | 3.7 | AAGTTAGATCGGGGACACATTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2898 | -233 | 4.5 | ACAAGTGATATCCATCACACTT |
| -95 | 3.8 | AAATTAGATAAAGGCCACATTA | ||
| Shewanella amazonensis SB2B | Sama_0915 | -240 | 4.1 | ACTCGTGATCAAGCTCACGGTT |
| -99 | 4.1 | AATTTGGATGTGGGGCACATTT | ||
| Shewanella loihica PV-4 | Shew_1091 | -238 | 4.6 | CCATGTGATACAGATCACAGTT |
| -97 | 4 | AAATAAGATATTGAACACATTT | ||
| Shewanella pealeana ATCC 700345 | Spea_1076 | -235 | 3.9 | CTGAGCGATATAGATCACAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1124 | -56 | 4.3 | TATAGTGAGTTATATAAAATTT |
| Shewanella piezotolerans WP3 | swp_3738 | -237 | 4.5 | CTGAGTGATACAGATCACACAT |
| -96 | 3.8 | AAATAAGATACAGGACACATTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1186 | -238 | 4.4 | CCATGTGACGCAGATCACAGTT |
| -97 | 4.2 | AAATAAGATGTAGAACACATTT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1282 | -238 | 4.4 | TCGCGTGATCACGATCACACTT |
| -97 | 3.8 | AAACAAGATATAGAACACATTT | ||
|
Position: -105
Score: 4.4 Sequence: AAATGTTACCTAGATCCCACAA
Locus tag: Shal_1244
|
||||
| Shal_1244 | -105 | 4.4 | AAATGTTACCTAGATCCCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3556 | ||||
| Ortholog function: cyclic nucleotide phosphodiesterase, putative | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1039 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1039 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella sp W3-18-1 | Sputw3181_3126 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella sp W3-18-1 | Sputw3181_3126 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella baltica OS155 | Sbal_1034 | -139 | 3.8 | TGATATGAAATTGTTCGCAGTT |
| -95 | 4.1 | TTTCGTTATATACTTAACAGAA | ||
| Shewanella denitrificans OS217 | Sden_1222 | -315 | 3.7 | AATTCTGACTCATCTTAAATTA |
|
Position: -269
Score: 4.4 Sequence: TTGTGGGATCTAGGTAACATTT
Position: 25
Score: 3.9 Sequence: TAATGGGATCTGATTCAGATCT
Locus tag: Shal_1245
|
||||
| Shal_1245 | -269 | 4.4 | TTGTGGGATCTAGGTAACATTT | |
| 25 | 3.9 | TAATGGGATCTGATTCAGATCT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purE | ||||
| Ortholog function: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) | ||||
| Shewanella oneidensis MR-1 | SO3554 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella oneidensis MR-1 | SO3554 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1041 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1041 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella sp W3-18-1 | Sputw3181_3124 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella sp W3-18-1 | Sputw3181_3124 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella sp ANA-3 | Shewana3_3155 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella sp ANA-3 | Shewana3_3155 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella sp MR-4 | Shewmr4_2975 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella sp MR-4 | Shewmr4_2975 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella sp MR-7 | Shewmr7_3057 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella sp MR-7 | Shewmr7_3057 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella baltica OS155 | Sbal_1036 | -139 | 3.8 | TGATATGAAATTGTTCGCAGTT |
| -95 | 4.1 | TTTCGTTATATACTTAACAGAA | ||
| Shewanella denitrificans OS217 | Sden_1224 | -315 | 3.7 | AATTCTGACTCATCTTAAATTA |
| Shewanella amazonensis SB2B | Sama_1064 | -82 | 4.1 | AAATTTGCCAAAGCTCACACAT |
| Shewanella amazonensis SB2B | Sama_1064 | -82 | 4.1 | AAATTTGCCAAAGCTCACACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1245 | -269 | 4.4 | TTGTGGGATCTAGGTAACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1245 | -269 | 4.4 | TTGTGGGATCTAGGTAACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1245 | -269 | 4.4 | TTGTGGGATCTAGGTAACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1333 | -217 | 3.8 | TATTGTGAAGTCATCCGGATAT |
| Shewanella woodyi ATCC 51908 | Swoo_3321 | -288 | 3.7 | TCCAGCGACTTAGATCACATTT |
|
Position: -301
Score: 4 Sequence: TAGCTTGATTTTTATCACTCTT
Position: -140
Score: 4.2 Sequence: ATTTGAGAGCTATATCGCAGTT
Locus tag: Shal_1257
|
||||
| Shal_1257 | -301 | 4 | TAGCTTGATTTTTATCACTCTT | |
| -140 | 4.2 | ATTTGAGAGCTATATCGCAGTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3406 | ||||
| Ortholog function: FIG024006: iron uptake protein | ||||
| Shewanella pealeana ATCC 700345 | Spea_1223 | -248 | 3.8 | TATTTTGATGTTTACCTCGCAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1257 | -301 | 4 | TAGCTTGATTTTTATCACTCTT |
| -140 | 4.2 | ATTTGAGAGCTATATCGCAGTT | ||
|
Position: -319
Score: 3.9 Sequence: AAGAGTGATAAAAATCAAGCTA
Locus tag: Shal_1258
|
||||
| Shal_1258 | -319 | 3.9 | AAGAGTGATAAAAATCAAGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiA-1 | ||||
| Ortholog function: ribosomal subunit interface protein | ||||
| Shewanella oneidensis MR-1 | SO3403 | -142 | 4.7 | TTCTTTGATAGGTCTCACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2725 | -145 | 4.9 | TTCTTTGATGTAACTCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_1287 | -145 | 4.9 | TTCTTTGATGTAACTCACATTT |
| Shewanella sp ANA-3 | Shewana3_1151 | -142 | 4.6 | TTCTTTGATAAGTCTCACATTT |
| Shewanella sp MR-4 | Shewmr4_1150 | -142 | 4.6 | TTCTTTGATAAATCTCACATTT |
| Shewanella sp MR-7 | Shewmr7_1221 | -142 | 5 | TTTTTTGATAAATCTCACATTT |
| Shewanella baltica OS155 | Sbal_1239 | -222 | 4.2 | TTTTGTGATTGATTTATTATTA |
| -144 | 4.3 | CTTCTTGATGGCGGTCACATTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1258 | -319 | 3.9 | AAGAGTGATAAAAATCAAGCTA |
| -230 | 3.8 | TATCCTGATGAATGCCACAATT | ||
| Shewanella piezotolerans WP3 | swp_3408 | -177 | 4.1 | TGATGTGATAAAAAGCACTCAT |
|
Position: -67
Score: 4.4 Sequence: AAGTTTGATCTACAGCTCATTT
Locus tag: Shal_1266
|
||||
| Shal_1266 | -67 | 4.4 | AAGTTTGATCTACAGCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadE | ||||
| Ortholog function: acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) | ||||
| Shewanella loihica PV-4 | Shew_3003 | -49 | 4.9 | TTTTGTGACGTAATGCACACTA |
| Shewanella pealeana ATCC 700345 | Spea_1234 | -68 | 3.9 | AAATTTGATCTATGCCTCGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1266 | -67 | 4.4 | AAGTTTGATCTACAGCTCATTT |
| Shewanella piezotolerans WP3 | swp_3422 | -67 | 4.4 | AAATTTGATCTGCCGCTCAATT |
|
Position: -340
Score: 3.7 Sequence: TTGATTGATTTGAATCAATTTT
Position: -234
Score: 4.1 Sequence: ATTTGGGATGAGTATCACGGAA
Locus tag: Shal_1381
|
||||
| Shal_1381 | -340 | 3.7 | TTGATTGATTTGAATCAATTTT | |
| -234 | 4.1 | ATTTGGGATGAGTATCACGGAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: cytochrome d ubiquinol oxidase, subunit I, CydA | ||||
| Shewanella oneidensis MR-1 | SO3286 | -203 | 4.2 | TAGTGTGACTAGGGTCTCAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_2641 | -204 | 4.3 | TAGTGTGACGCTTGTCCCAATA |
| Shewanella sp W3-18-1 | Sputw3181_1366 | -204 | 4.3 | TAGTGTGACGCTTGTCCCAATA |
| Shewanella sp ANA-3 | Shewana3_1241 | -203 | 4.2 | TAGTGTGACTAGGGTCTCAGTA |
| Shewanella sp MR-4 | Shewmr4_1239 | -203 | 4.2 | TAGTGTGACTAGGGTCTCAGTA |
| Shewanella sp MR-7 | Shewmr7_1310 | -203 | 4.2 | TAGTGTGACTAGGGTCTCAGTA |
| Shewanella baltica OS155 | Sbal_2979 | -207 | 4.4 | TAGTGTGACTCGCGTCTCAATA |
| Shewanella denitrificans OS217 | Sden_1274 | -157 | 4.1 | TAAATTGATCTAAATCAATTTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1142 | -240 | 4.2 | AAATCTAATGCTGGTCACATAA |
| Shewanella loihica PV-4 | Shew_1302 | -206 | 4.7 | TTTTGTGAGCCGCCTCTCAAAA |
| Shewanella pealeana ATCC 700345 | Spea_1318 | -235 | 4 | ATTCGGGATGGGTGTCACAAAG |
| Shewanella halifaxensis HAW-EB4 | Shal_1381 | -234 | 4.1 | ATTTGGGATGAGTATCACGGAA |
| Shewanella piezotolerans WP3 | swp_1469 | -231 | 4.2 | AGGTGAGACGGTGATCACAATA |
| Shewanella sediminis HAW-EB3 | Ssed_3118 | -203 | 4 | TAGTGTGAAGTTCGTCGTAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_1565 | -204 | 3.8 | TTTTGTGAGATCGGTCGGAAAG |
|
Position: -86
Score: 4.7 Sequence: AACCGTGATCTAGTTAACAAAA
Locus tag: Shal_1531
|
||||
| Shal_1531 | -86 | 4.7 | AACCGTGATCTAGTTAACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phhA | ||||
| Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1) | ||||
| Shewanella oneidensis MR-1 | SO1666 | -75 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1386 | -75 | 4.7 | AAGTGTGAGGGAGTTAACAAAA |
| Shewanella sp W3-18-1 | Sputw3181_2715 | -75 | 4.7 | AAGTGTGAGGGAGTTAACAAAA |
| Shewanella sp ANA-3 | Shewana3_2781 | -75 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella sp MR-4 | Shewmr4_2607 | -75 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella sp MR-7 | Shewmr7_2674 | -75 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella baltica OS155 | Sbal_1484 | -75 | 4.7 | AAGTGTGAGGGAGTTAACAAAT |
| Shewanella denitrificans OS217 | Sden_2595 | -61 | 4.1 | AATTGTGCGCCATGGCACACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1328 | -74 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella amazonensis SB2B | Sama_2222 | -76 | 4.6 | AAACGTGAGGCAGTTAACAAAA |
| Shewanella loihica PV-4 | Shew_1435 | -40 | 4.7 | AAGTGTGATCCTGTTAACAAAC |
| Shewanella pealeana ATCC 700345 | Spea_1448 | -126 | 4.9 | AACTGTGATCGGGTTAACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1531 | -86 | 4.7 | AACCGTGATCTAGTTAACAAAA |
| Shewanella piezotolerans WP3 | swp_1650 | -76 | 5 | AACTGTGATCTGGTTAACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_2930 | -75 | 4.8 | AACTGTGATGGAGTTAACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_1715 | -74 | 4.7 | AAGTGTGAAGTGGTTAACAAAA |
|
Position: -144
Score: 4.5 Sequence: CAGTGTGATTTATCTCACGCTA
Locus tag: Shal_1534
|
||||
| Shal_1534 | -144 | 4.5 | CAGTGTGATTTATCTCACGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fahA | ||||
| Ortholog function: Fumarylacetoacetate hydrolase family protein | ||||
| Shewanella oneidensis MR-1 | SO1670 | -200 | 5.1 | AAATGTGATTTTGTTCACGCTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1389 | -229 | 5 | AAATGTGATTTGTGTCACGCTA |
| Shewanella sp W3-18-1 | Sputw3181_2712 | -229 | 5 | AAATGTGATTTGTGTCACGCTA |
| Shewanella sp ANA-3 | Shewana3_2778 | -197 | 5.1 | AAATGTGATTTTGCTCACGCTA |
| Shewanella sp MR-4 | Shewmr4_2604 | -196 | 5.1 | AAATGTGATTTTGCTCACGCTA |
| Shewanella sp MR-7 | Shewmr7_2671 | -196 | 5.1 | AAATGTGATTTTGCTCACGCTA |
| Shewanella baltica OS155 | Sbal_1487 | -235 | 5 | AAATGTGATTTTGGTCACGCTA |
| Shewanella denitrificans OS217 | Sden_2592 | -107 | 4.7 | AAATGTGATTTTGCGCACGCTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1331 | -116 | 4.1 | AAATGTGATTTGGTACTTACTA |
| Shewanella amazonensis SB2B | Sama_2219 | -111 | 5 | AATTGTGATTTGAGTCACGCTA |
| Shewanella loihica PV-4 | Shew_1438 | -130 | 4.4 | GAGTGTGATTTGTATCACGCTA |
| Shewanella pealeana ATCC 700345 | Spea_1451 | -158 | 5.3 | AAGTGTGATTTCGTTCACACTA |
| Shewanella halifaxensis HAW-EB4 | Shal_1534 | -144 | 4.5 | CAGTGTGATTTATCTCACGCTA |
| Shewanella piezotolerans WP3 | swp_1653 | -140 | 5 | TAGTGTGATTTAGCTCACGCTA |
| Shewanella sediminis HAW-EB3 | Ssed_2927 | -116 | 4.1 | GAGCGTGATTCATGTCACACTA |
| Shewanella woodyi ATCC 51908 | Swoo_1718 | -133 | 5 | TATTGTGATTTGTGTCACGCTA |
|
Position: -207
Score: 4 Sequence: AAACGCGATATAAATCACTTTC
Locus tag: Shal_1548
|
||||
| Shal_1548 | -207 | 4 | AAACGCGATATAAATCACTTTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3120 | ||||
| Ortholog function: oxidoreductase, Gfo/Idh/MocA family | ||||
| Shewanella oneidensis MR-1 | SO3120 | -186 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella putrefaciens CN-32 | Sputcn32_2490 | -173 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella sp W3-18-1 | Sputw3181_1518 | -173 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella sp ANA-3 | Shewana3_1428 | -187 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella sp MR-4 | Shewmr4_1375 | -186 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella sp MR-7 | Shewmr7_1440 | -186 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella baltica OS155 | Sbal_2793 | -202 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella pealeana ATCC 700345 | Spea_1465 | -158 | 4 | AAACGCGATATAAATCACTTTC |
| Shewanella halifaxensis HAW-EB4 | Shal_1548 | -207 | 4 | AAACGCGATATAAATCACTTTC |
| Shewanella piezotolerans WP3 | swp_1670 | -185 | 3.7 | AAACGCGATTTAAGTCACTTTC |
| Shewanella woodyi ATCC 51908 | Swoo_1749 | -214 | 4.2 | AAACGCGATCTAAGTCACTTAA |
|
Position: -148
Score: 4.1 Sequence: GAAAGTGATTTATATCGCGTTT
Locus tag: Shal_1549
|
||||
| Shal_1549 | -148 | 4.1 | GAAAGTGATTTATATCGCGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3119 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3119 | -166 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2489 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella sp W3-18-1 | Sputw3181_1519 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella sp ANA-3 | Shewana3_1429 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella sp MR-4 | Shewmr4_1376 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella sp MR-7 | Shewmr7_1441 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella baltica OS155 | Sbal_2792 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella amazonensis SB2B | Sama_2198 | -151 | 4.4 | AATAGTGATTAAGCTCGCGTTT |
| Shewanella pealeana ATCC 700345 | Spea_1466 | -148 | 4.1 | GAAAGTGATTTATATCGCGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1549 | -148 | 4.1 | GAAAGTGATTTATATCGCGTTT |
| Shewanella piezotolerans WP3 | swp_1671 | -220 | 3.8 | GAAAGTGACTTAAATCGCGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_2897 | -173 | 4.7 | TAAAGTGATTTAGATCGCGTTT |
| Shewanella woodyi ATCC 51908 | Swoo_1750 | -148 | 4.4 | TTAAGTGACTTAGATCGCGTTT |
|
Position: -84
Score: 4.7 Sequence: AATTGTGAACAACATCACACAG
Locus tag: Shal_1567
|
||||
| Shal_1567 | -84 | 4.7 | AATTGTGAACAACATCACACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2806 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO2806 | -95 | 4.3 | TCTTGTGAATTGAGTCACATAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1554 | -95 | 4 | TCTTGTGAATTGAGTCACAGAG |
| Shewanella sp W3-18-1 | Sputw3181_2545 | -95 | 4 | TCTTGTGAATTGAGTCACAGAG |
| Shewanella sp ANA-3 | Shewana3_2588 | -95 | 4 | TCTTGTGAATTGAGTCACAGAG |
| Shewanella sp MR-4 | Shewmr4_2426 | -95 | 4 | TCTTGTGAATTGAGTCACAGAG |
| Shewanella sp MR-7 | Shewmr7_2496 | -95 | 4 | TCTTGTGAATTGAGTCACAGAG |
| Shewanella baltica OS155 | Sbal_1679 | -94 | 4.2 | ATCTGTGAATTAAGTCACACAG |
| Shewanella denitrificans OS217 | Sden_1453 | -35 | 3.9 | ATATTTTATGCCGTTCACTCAT |
| Shewanella amazonensis SB2B | Sama_1287 | -85 | 4 | AATTGTGAAGCCAGTCACGGTG |
| Shewanella pealeana ATCC 700345 | Spea_1483 | -84 | 4.4 | AATTGTGAATAACGTCACACAG |
| Shewanella halifaxensis HAW-EB4 | Shal_1567 | -84 | 4.7 | AATTGTGAACAACATCACACAG |
| Shewanella piezotolerans WP3 | swp_1689 | 27 | 4.3 | AACTGTGAAAGGTATCACACAC |
| Shewanella sediminis HAW-EB3 | Ssed_2877 | -82 | 4.5 | TAATGTGAATGGCGTCACACAG |
| Shewanella woodyi ATCC 51908 | Swoo_1771 | -81 | 4.6 | TATTGTGAAAGTCATCACACAG |
|
Position: -80
Score: 4 Sequence: TAGTGTGATTGATATCTATAAT
Locus tag: Shal_1587
|
||||
| Shal_1587 | -80 | 4 | TAGTGTGATTGATATCTATAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2010 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO2010 | -70 | 4.7 | TTTTGTGATCTTCGTCACTGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_2305 | -65 | 5.1 | TTTTGTGATCTCCATCACCGTT |
| Shewanella sp W3-18-1 | Sputw3181_1703 | -65 | 5.1 | TTTTGTGATCTCCATCACCGTT |
| Shewanella sp MR-4 | Shewmr4_2257 | -65 | 4.9 | TTTTGTGATCTTAATCACTGTA |
| Shewanella sp MR-7 | Shewmr7_2329 | -65 | 4.9 | TTTTGTGATCTTAATCACTGTA |
| Shewanella baltica OS155 | Sbal_2577 | -65 | 5 | TTTTGTGATCTAAATCACTGTA |
| Shewanella denitrificans OS217 | Sden_2384 | -81 | 4.8 | AAATGTGATCCAGCTCAGCTTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2410 | -116 | 4.8 | TTTTGTGATCGACTTCACGTCT |
| Shewanella amazonensis SB2B | Sama_1307 | -51 | 4.3 | TTTTGTGAGCTGCATCACGGCA |
| Shewanella loihica PV-4 | Shew_2238 | -48 | 4.1 | AAAATTGATCTAGATCAATAAA |
| Shewanella pealeana ATCC 700345 | Spea_1505 | -51 | 4.1 | AAAATTGATCTAGATCAATAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1587 | -80 | 4 | TAGTGTGATTGATATCTATAAT |
| Shewanella piezotolerans WP3 | swp_1711 | -21 | 4.1 | AAAATTGATCTAGATCAATAAA |
| Shewanella sediminis HAW-EB3 | Ssed_2855 | -49 | 4.1 | AAAATTGATCTAGATCAATAAA |
| Shewanella woodyi ATCC 51908 | Swoo_1790 | -48 | 4.1 | TAAATTGATCTAGATCAATAAA |
|
Position: -113
Score: 3.7 Sequence: AAACGTGATATTCATCGATATC
Locus tag: Shal_1618
|
||||
| Shal_1618 | -113 | 3.7 | AAACGTGATATTCATCGATATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3682 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3682 | -109 | 3.8 | TTGCGTGATTTTGTGCAAGCAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2981 | -76 | 3.8 | ATTTTTGAGCAAGATCACGGCT |
| Shewanella sp W3-18-1 | Sputw3181_0966 | -76 | 3.8 | ATTTTTGAGCAAGATCACGGCT |
| Shewanella sp MR-4 | Shewmr4_0873 | -166 | 3.7 | TGACGTGATTTGTGGCGTATAA |
| Shewanella sp MR-7 | Shewmr7_3149 | -166 | 3.7 | TGACGTGATTTGTGGCGTATAA |
| Shewanella baltica OS155 | Sbal_3331 | -76 | 3.7 | ATTTTTGAGCAATATCACGGCT |
| Shewanella amazonensis SB2B | Sama_2854 | -78 | 4 | AAACTTGATCTGGATCACGAGT |
| Shewanella loihica PV-4 | Shew_3102 | -84 | 4.2 | AAATGTGATCTGGATCAAGTGG |
| Shewanella pealeana ATCC 700345 | Spea_3356 | -102 | 4.7 | AATTGTGAGCTAGATCAAACTC |
| Shewanella halifaxensis HAW-EB4 | Shal_3428 | -90 | 4.8 | AATTGTGACTGAGATCAAATTC |
| Shewanella piezotolerans WP3 | swp_1054 | -79 | 4.3 | TTTTGTGAGCAAGATCAACTTC |
| Shewanella sediminis HAW-EB3 | Ssed_3715 | -111 | 4.2 | CAGTGTGATCTCGATCAACTTC |
|
Position: -100
Score: 4.3 Sequence: ATGCTTGATCTAGCTCAAACTT
Locus tag: Shal_1659
|
||||
| Shal_1659 | -100 | 4.3 | ATGCTTGATCTAGCTCAAACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_2271 | ||||
| Ortholog function: permease of the major facilitator superfamily | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_2271 | -125 | 4.1 | TTTTATGACTTAGGTCAACTTA |
| Shewanella loihica PV-4 | Shew_1497 | -123 | 4.3 | TAACTTGAACTGGCTCACGTAA |
| Shewanella pealeana ATCC 700345 | Spea_1591 | -100 | 4.8 | ATATTTGATCCAGCTCAAACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1659 | -100 | 4.3 | ATGCTTGATCTAGCTCAAACTT |
| Shewanella piezotolerans WP3 | swp_1789 | -100 | 4.1 | CTCTATGATATAGCTCACAGAT |
| Shewanella sediminis HAW-EB3 | Ssed_1826 | -165 | 3.8 | CAACTTGATTTCGCTCAAGTAT |
| Shewanella woodyi ATCC 51908 | Swoo_2762 | -220 | 4.1 | AAACTTGATTTCGCTCAAGTAA |
|
Position: -227
Score: 3.7 Sequence: CTATTTGATATCAATATCACTT
Position: -225
Score: 3.9 Sequence: ATTTGATATCAATATCACTTTT
Locus tag: Shal_1682
|
||||
| Shal_1682 | -227 | 3.7 | CTATTTGATATCAATATCACTT | |
| -225 | 3.9 | ATTTGATATCAATATCACTTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2757 | ||||
| Ortholog function: Histidine permease YuiF | ||||
| Shewanella oneidensis MR-1 | SO2757 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1598 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_2424 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp ANA-3 | Shewana3_2542 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp MR-4 | Shewmr4_2377 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp MR-7 | Shewmr7_2449 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella baltica OS155 | Sbal_1737 | -227 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella denitrificans OS217 | Sden_2092 | -208 | 4.3 | ATATGCGAGAGGGATCACAATC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1454 | -191 | 3.5 | TTAAATAATAAGTTTCAAATAT |
| Shewanella amazonensis SB2B | Sama_2095 | -210 | 3.9 | AATTTGGAGGAATATCACACAA |
| Shewanella loihica PV-4 | Shew_1515 | -230 | 4 | ATTTGGGATCATTGTCACTTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1682 | -225 | 3.9 | ATTTGATATCAATATCACTTTT |
| Shewanella piezotolerans WP3 | swp_1820 | -77 | 4.1 | ATTTGAGAGCAATATCACTTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1847 | -226 | 4.5 | ATTTGGGATCAATATCACCTTT |
| Shewanella woodyi ATCC 51908 | Swoo_2742 | -155 | 4 | TTTAGTGCTGTTATTTACACTT |
|
Position: -108
Score: 4.4 Sequence: AAAAGTGATATTGATATCAAAT
Locus tag: Shal_1683
|
||||
| Shal_1683 | -108 | 4.4 | AAAAGTGATATTGATATCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Swoo_2741 | ||||
| Ortholog function: Alkyl hydroperoxide reductase subunit C-like protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1599 | -183 | 4.6 | AAATGTGATATTGGTCTTAAAT |
| Shewanella sp W3-18-1 | Sputw3181_2423 | -183 | 4.6 | AAATGTGATATTGGTCTTAAAT |
| Shewanella sp ANA-3 | Shewana3_2541 | -167 | 4.6 | AAATGTGATATTGGTCTTAAAT |
| Shewanella sp MR-4 | Shewmr4_2376 | -167 | 4.6 | AAATGTGATATTGGTCTTAAAT |
| Shewanella sp MR-7 | Shewmr7_2448 | -167 | 4.6 | AAATGTGATATTGGTCTTAAAT |
| Shewanella baltica OS155 | Sbal_1738 | -183 | 4.6 | AAATGTGATATTGGTCTTAAAT |
| Shewanella denitrificans OS217 | Sden_2091 | -88 | 4.7 | GATTGTGATCCCTCTCGCATAT |
| Shewanella amazonensis SB2B | Sama_2094 | -115 | 4.3 | TTGTGTGATATTCCTCCAAATT |
| Shewanella loihica PV-4 | Shew_1516 | -105 | 4.1 | AAAAGTGACAATGATCCCAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1683 | -108 | 4.4 | AAAAGTGATATTGATATCAAAT |
| Shewanella piezotolerans WP3 | swp_1821 | -108 | 4.7 | AAAAGTGATATTGCTCTCAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_1848 | -106 | 4.4 | AAAGGTGATATTGATCCCAAAT |
|
Position: -266
Score: 3.6 Sequence: TATTGCGGGGTTTGTCACGTTT
Position: -97
Score: 3.5 Sequence: TAAAGCGATAAAAATAAGATTA
Locus tag: Shal_1686
|
||||
| Shal_1686 | -266 | 3.6 | TATTGCGGGGTTTGTCACGTTT | |
| -97 | 3.5 | TAAAGCGATAAAAATAAGATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2753 | ||||
| Ortholog function: prolyl endopeptidase (EC 3.4.21.26) | ||||
| Shewanella oneidensis MR-1 | SO2753 | -235 | 4.7 | TTAAGTGATCTGCCTCACTTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1602 | -234 | 4.8 | TTAAGTGATCTAGCTCACTTAA |
| Shewanella sp W3-18-1 | Sputw3181_2420 | -234 | 4.8 | TTAAGTGATCTAGCTCACTTAA |
| Shewanella sp ANA-3 | Shewana3_2536 | -234 | 4.8 | TTAAGTGATCTGGCTCACTTAA |
| Shewanella sp MR-4 | Shewmr4_2373 | -234 | 4.8 | TTAAGTGATCTGGCTCACTTAA |
| Shewanella sp MR-7 | Shewmr7_2445 | -234 | 4.8 | TTAAGTGATCTGGCTCACTTAA |
| Shewanella baltica OS155 | Sbal_1741 | -233 | 4.7 | AAAGGTGATCTATATCACTTAA |
| Shewanella amazonensis SB2B | Sama_2091 | -226 | 4.7 | TTGTGTGATCTTGCGCACGTTA |
| Shewanella loihica PV-4 | Shew_1522 | -276 | 3.5 | ATTTGCGCTTGATTACGCAAAA |
| Shewanella pealeana ATCC 700345 | Spea_2569 | -251 | 3.9 | TAGTGTGGGTTTAGTCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1686 | -266 | 3.6 | TATTGCGGGGTTTGTCACGTTT |
| Shewanella piezotolerans WP3 | swp_1825 | -248 | 3.6 | TTGTGAGTCCTTAATCACGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1852 | -257 | 3.8 | AAGTGTGATCTTGGTCGGTAAA |
| Shewanella woodyi ATCC 51908 | Swoo_2736 | -259 | 3.7 | TAGTGTGATCTAGGTTGGGTAA |
|
Position: -140
Score: 4.1 Sequence: ATTTGTGAACTATCTGGCAATT
Locus tag: Shal_1712
|
||||
| Shal_1712 | -140 | 4.1 | ATTTGTGAACTATCTGGCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2637 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella amazonensis SB2B | Sama_2066 | -139 | 4 | ATTTGTGATCACTGTGGCAATT |
| Shewanella loihica PV-4 | Shew_1556 | -132 | 4.2 | AATTGTGATCGGCGTGGCAATT |
| Shewanella pealeana ATCC 700345 | Spea_2542 | -138 | 4.3 | ATTTGTGATTTGTCTGGCAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1712 | -140 | 4.1 | ATTTGTGAACTATCTGGCAATT |
| Shewanella piezotolerans WP3 | swp_1858 | -143 | 4.3 | ATTTGTGATCCATGTGGCAATT |
| Shewanella sediminis HAW-EB3 | Ssed_1878 | -136 | 4.4 | AATTGTGATCTGCGTGGCAATT |
| Shewanella woodyi ATCC 51908 | Swoo_2709 | -136 | 4.4 | AATTGTGATCTGTGTGGCAATT |
|
Position: -84
Score: 4.4 Sequence: CAGCGTGATCTACGTCACATTG
Locus tag: Shal_1764
|
||||
| Shal_1764 | -84 | 4.4 | CAGCGTGATCTACGTCACATTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2589 | ||||
| Ortholog function: isopenicillin N synthase | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_1487 | -55 | 4 | AAGTGTGACTAAGGTTACCATT |
| Shewanella loihica PV-4 | Shew_1590 | -85 | 4.3 | AAACGTGATTTTTATCACACCC |
| Shewanella pealeana ATCC 700345 | Spea_2507 | -84 | 4.2 | AAGCGTGATCTAGCTCACTCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1764 | -84 | 4.4 | CAGCGTGATCTACGTCACATTG |
| Shewanella piezotolerans WP3 | swp_3059 | -87 | 4.2 | GAATGTGATCTAGCTCACAGGT |
| Shewanella sediminis HAW-EB3 | Ssed_2637 | -51 | 5.1 | AAACGTGATTTCAATCACACTT |
| Shewanella woodyi ATCC 51908 | Swoo_2030 | -82 | 4.2 | CAAGGTGATTTATCTCACACAG |
|
Position: -174
Score: 4.7 Sequence: ATATTTGAGTTGATTCACAAAA
Locus tag: Shal_1780
|
||||
| Shal_1780 | -174 | 4.7 | ATATTTGAGTTGATTCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2773 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella sp ANA-3 | Shewana3_2556 | -125 | 4.1 | AATTGTGCCGGATATCACTTTC |
| Shewanella sp MR-4 | Shewmr4_2393 | -125 | 4.1 | AATTGTGCCGGATATCACTTTC |
| Shewanella sp MR-7 | Shewmr7_2463 | -125 | 4.1 | AATTGTGCCGGATATCACTTTC |
| Shewanella pealeana ATCC 700345 | Spea_2491 | -172 | 4.9 | ATATTTGAAGTGTTTCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1780 | -174 | 4.7 | ATATTTGAGTTGATTCACAAAA |
|
Position: -81
Score: 3.9 Sequence: AACTGAGATCTTCATCTCATTC
Locus tag: Shal_1783
|
||||
| Shal_1783 | -81 | 3.9 | AACTGAGATCTTCATCTCATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cdd | ||||
| Ortholog function: cytidine deaminase (EC 3.5.4.5) | ||||
| Shewanella oneidensis MR-1 | SO2791 | -82 | 4.1 | AAACGCGAACTAACTCGCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1568 | -131 | 3.8 | TATGGTGAAATCGGTCAAATAC |
| -82 | 4.2 | AAACGCGAGCTAACTCGCATTT | ||
| Shewanella sp W3-18-1 | Sputw3181_2531 | -131 | 3.8 | TATGGTGAAATCGGTCAAATAC |
| -82 | 4.2 | AAACGCGAGCTAACTCGCATTT | ||
| Shewanella sp ANA-3 | Shewana3_2573 | -82 | 4.1 | AAACGCGAACTAACTCGCATTT |
| Shewanella sp MR-4 | Shewmr4_2411 | -82 | 4.1 | AAACGCGAACTAACTCGCATTT |
| Shewanella sp MR-7 | Shewmr7_2481 | -82 | 4.1 | AAACGCGAACTAACTCGCATTT |
| Shewanella baltica OS155 | Sbal_1694 | -157 | 3.8 | ATTCGTGAATAGACTCACTCTA |
| -82 | 4.2 | AAACGCGAGCTAACTCGCATTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1637 | -44 | 3.8 | AAATTTTATTTTTATCCAATTT |
| Shewanella amazonensis SB2B | Sama_1974 | -82 | 4 | AAATGGGATTAGACTCCCATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_1783 | -81 | 3.9 | AACTGAGATCTTCATCTCATTC |
| Shewanella piezotolerans WP3 | swp_3037 | -82 | 4.1 | AAGTGCGATCTCTGTCGCATTC |
| Shewanella sediminis HAW-EB3 | Ssed_2618 | -82 | 3.9 | AAATGGGAGCTGGATCTCATCA |
| Shewanella woodyi ATCC 51908 | Swoo_2048 | -82 | 3.9 | AAATGGGAGAAAGATCCCATTA |
|
Position: -155
Score: 5 Sequence: TTATGTGATGATAATCAAAATT
Locus tag: Shal_1832
|
||||
| Shal_1832 | -155 | 5 | TTATGTGATGATAATCAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadD1 | ||||
| Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Shewanella oneidensis MR-1 | SO2581 | -155 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1761 | -154 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella sp W3-18-1 | Sputw3181_2264 | -154 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella sp ANA-3 | Shewana3_2386 | -155 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella sp MR-4 | Shewmr4_2177 | -155 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella sp MR-7 | Shewmr7_2254 | -155 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella baltica OS155 | Sbal_1864 | -156 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella denitrificans OS217 | Sden_1625 | -189 | 4.1 | TTATGTGATTATGGGCCCAAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1733 | -165 | 4.7 | TTATGTGATTATGATCGAAAAT |
| Shewanella amazonensis SB2B | Sama_1934 | -140 | 4.8 | TTATGTGATGATTGTCAAAAAT |
| Shewanella loihica PV-4 | Shew_2188 | -149 | 4.9 | TTGTGTGATGATGTTCAAAATT |
| Shewanella pealeana ATCC 700345 | Spea_2448 | -156 | 5 | TTATGTGATGATAATCAAAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1832 | -155 | 5 | TTATGTGATGATAATCAAAATT |
| Shewanella piezotolerans WP3 | swp_2289 | -153 | 5 | ATATGTGATGATAATCAAAATT |
| Shewanella sediminis HAW-EB3 | Ssed_2523 | -151 | 5 | TTATGTGATGATGATCATAATT |
| Shewanella woodyi ATCC 51908 | Swoo_2110 | -153 | 5.1 | TTATGTGATGATGTTCAAAATT |
|
Position: -70
Score: 4.3 Sequence: AATTGTGAGATAAACCTCAAAA
Position: -68
Score: 3.6 Sequence: TTGTGAGATAAACCTCAAAACA
Locus tag: Shal_1890
|
||||
| Shal_1890 | -70 | 4.3 | AATTGTGAGATAAACCTCAAAA | |
| -68 | 3.6 | TTGTGAGATAAACCTCAAAACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadE2 | ||||
| Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) | ||||
| Shewanella oneidensis MR-1 | SO2536 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1791 | -72 | 4.6 | AATTGTGATCGCCATCAATAAA |
| Shewanella sp W3-18-1 | Sputw3181_2234 | -72 | 4.6 | AATTGTGATCGCCATCAATAAA |
| Shewanella sp ANA-3 | Shewana3_2323 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella sp MR-4 | Shewmr4_2146 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella sp MR-7 | Shewmr7_2223 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella baltica OS155 | Sbal_2306 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella denitrificans OS217 | Sden_1764 | -66 | 3.8 | ACTTGTGAATAGGATCATCATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1869 | -67 | 3.8 | TCTTGTGAATGAGATCAATAAT |
| Shewanella amazonensis SB2B | Sama_1870 | -64 | 4.3 | ACTTGTGATCAGGATCGCTTAT |
| Shewanella loihica PV-4 | Shew_2108 | -71 | 4.9 | AATTGTGATTATGGTCATATAA |
| Shewanella pealeana ATCC 700345 | Spea_2393 | -70 | 4.5 | AATTGTGAGATAGAACTCAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1890 | -70 | 4.3 | AATTGTGAGATAAACCTCAAAA |
| Shewanella piezotolerans WP3 | swp_2312 | -97 | 3.5 | AATTGTGACGTAGACCCGCAAA |
| Shewanella sediminis HAW-EB3 | Ssed_1999 | -71 | 4.5 | AATTGTGATTATGATCAATAAA |
| Shewanella woodyi ATCC 51908 | Swoo_2604 | -73 | 4.8 | AATTGTGATATCGATCAATATA |
|
Position: -201
Score: 4 Sequence: TGTTTTGAGGTTTATCTCACAA
Position: -199
Score: 4.2 Sequence: TTTTGAGGTTTATCTCACAATT
Locus tag: Shal_1891
|
||||
| Shal_1891 | -201 | 4 | TGTTTTGAGGTTTATCTCACAA | |
| -199 | 4.2 | TTTTGAGGTTTATCTCACAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2535 | ||||
| Ortholog function: Predicted glutamine amidotransferase | ||||
| Shewanella oneidensis MR-1 | SO2535 | -194 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1792 | -193 | 4.7 | TTTATTGATGGCGATCACAATT |
| Shewanella sp W3-18-1 | Sputw3181_2233 | -193 | 4.7 | TTTATTGATGGCGATCACAATT |
| Shewanella sp ANA-3 | Shewana3_2322 | -133 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella sp MR-4 | Shewmr4_2145 | -193 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella sp MR-7 | Shewmr7_2222 | -193 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella baltica OS155 | Sbal_2305 | -193 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella denitrificans OS217 | Sden_1765 | -204 | 3.7 | TATGATGATCCTATTCACAAGT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1870 | -203 | 3.9 | ATTATTGATCTCATTCACAAGA |
| Shewanella amazonensis SB2B | Sama_1869 | -195 | 3.9 | ATAAGCGATCCTGATCACAAGT |
| Shewanella loihica PV-4 | Shew_2107 | -191 | 4.6 | TTATATGACCATAATCACAATT |
| Shewanella pealeana ATCC 700345 | Spea_2392 | -196 | 4.4 | TTTTGAGTTCTATCTCACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1891 | -199 | 4.2 | TTTTGAGGTTTATCTCACAATT |
| Shewanella sediminis HAW-EB3 | Ssed_2000 | -191 | 4.5 | TTTATTGATCATAATCACAATT |
| Shewanella woodyi ATCC 51908 | Swoo_2603 | -190 | 4.8 | TATATTGATCGATATCACAATT |
|
Position: -306
Score: 5.5 Sequence: AATTGTGATGCGCGTCACAATT
Locus tag: Shal_1923
|
||||
| Shal_1923 | -306 | 5.5 | AATTGTGATGCGCGTCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2427 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO2427 | -319 | 5.1 | AAGTGTGATTAAAATCACACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1940 | -318 | 5.7 | TAGTGTGATCTACATCACATAA |
| -274 | 4 | AAATGTTATTTTATTAACAGAG | ||
| Shewanella sp W3-18-1 | Sputw3181_2068 | -318 | 4.6 | GCGTGTGATCTATATCACATAA |
| Shewanella sp ANA-3 | Shewana3_1958 | -320 | 5.2 | AAGTGTGACACACATCACATAT |
| -276 | 4.4 | AAATGTTATTTTCTTAACAGTT | ||
| Shewanella sp MR-4 | Shewmr4_1903 | -319 | 5.6 | AAATGTGATGTGCGTCACATTT |
| -275 | 3.9 | AAATGTTATTTTATTAACAGCT | ||
| Shewanella sp MR-7 | Shewmr7_2075 | -319 | 5.2 | AAGTGTGACGTGTGTCACATTT |
| -275 | 4.3 | AAATGTTATTTTATTAACAGTA | ||
| Shewanella baltica OS155 | Sbal_2044 | -317 | 5.1 | AAGCGTGATCTGTGTCACATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2416 | -149 | 5 | AAATGTGATGTTGTTCACATGT |
| -4 | 4.1 | ATTCATGAGTTCAGTCACATTA | ||
| Shewanella amazonensis SB2B | Sama_1838 | -324 | 3.8 | TTAATCGATATGGGTCACAGAA |
| -301 | 5.2 | AAGTGTGATGCACGTCACAAAA | ||
| Shewanella loihica PV-4 | Shew_2074 | -308 | 5.1 | TTTTGTGATAATGGTCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1923 | -306 | 5.5 | AATTGTGATGCGCGTCACAATT |
| -199 | 4.1 | ACTTGTGCTGTTTGTCACAATG | ||
| Shewanella piezotolerans WP3 | swp_2362 | -310 | 4.7 | AAGCGTGACCTGTGTCACACTT |
| Shewanella sediminis HAW-EB3 | Ssed_2036 | -316 | 4.6 | TTTCGTGACGCGCGTCACAGTT |
| Shewanella woodyi ATCC 51908 | Swoo_2565 | -321 | 4.9 | TTCTGTGACCTGTGTCACAAAA |
|
Position: -95
Score: 4 Sequence: TAAATTGATCTCGCTCAATTTT
Locus tag: Shal_1924
|
||||
| Shal_1924 | -95 | 4 | TAAATTGATCTCGCTCAATTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gloA | ||||
| Ortholog function: lactoylglutathione lyase (EC 4.4.1.5) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2101 | -120 | 3.8 | TTTTGTGAGCAACAACCAATTT |
| -4 | 3.8 | ATTAATGATCTCGTTAACGCAA | ||
| Shewanella sp W3-18-1 | Sputw3181_1911 | -120 | 3.8 | TTTTGTGAGCAACAACCAATTT |
| -4 | 3.8 | ATTAATGATCTCGTTAACGCAA | ||
| Shewanella sp ANA-3 | Shewana3_2232 | -205 | 4 | TTTTGTGAGCAAGAGCTAAATA |
| -153 | 4.4 | CAAAGTGACGTAGCTCACAAAG | ||
| Shewanella sp MR-4 | Shewmr4_2107 | -205 | 4 | TTTTGTGAGCAAGAGCTAAATA |
| -153 | 4.8 | CAAAGTGATACAGCTCACATTA | ||
| Shewanella sp MR-7 | Shewmr7_1867 | -205 | 4 | TTTTGTGAGCAAGAGCTAAATA |
| -153 | 4.8 | CAAAGTGATACAGCTCACATTA | ||
| Shewanella baltica OS155 | Sbal_2269 | -196 | 4 | TTTTGTGAGCGACAGCCAATTT |
| Shewanella baltica OS155 | Sbal_4555 | -196 | 4 | TTTTGTGAGCGACAGCCAATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2179 | -101 | 4.6 | AAATGTGAACTAAAGCAAAATT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2098 | -213 | 3.8 | AAACGTTAAATCCATTACATTA |
| -41 | 3.7 | TTTAATGATGCGATTCAGAGAT | ||
| Shewanella amazonensis SB2B | Sama_1837 | -96 | 4.3 | AACTGTGAGTTGCTTCAGATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1924 | -95 | 4 | TAAATTGATCTCGCTCAATTTT |
| Shewanella sediminis HAW-EB3 | Ssed_2709 | -312 | 3.8 | TTTTGTAATTTTTTAAACAGTA |
| Shewanella woodyi ATCC 51908 | Swoo_2563 | -243 | 3.8 | TTTTATGACTCTATTAATATAA |
|
Position: -182
Score: 4.5 Sequence: AATCGTGATAAACCACACAAAA
Locus tag: Shal_2000
|
||||
| Shal_2000 | -182 | 4.5 | AATCGTGATAAACCACACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: swp_4302 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella pealeana ATCC 700345 | Spea_2293 | -183 | 4.4 | AAGCGTGATTGACCACACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2000 | -182 | 4.5 | AATCGTGATAAACCACACAAAA |
| Shewanella piezotolerans WP3 | swp_4302 | -180 | 4.3 | TTTAGTGATAGAGCACACAGAA |
| Shewanella woodyi ATCC 51908 | Swoo_2973 | -185 | 4 | TTCAGTGATGTAGAACTCAAAA |
|
Position: -157
Score: 4.3 Sequence: TAATGTGATTTTCAGAATAATT
Locus tag: Shal_2004
|
||||
| Shal_2004 | -157 | 4.3 | TAATGTGATTTTCAGAATAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: swp_4060 | ||||
| Ortholog function: phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A | ||||
| Shewanella sp ANA-3 | Shewana3_0861 | -204 | 4 | AAACTTGCATCAGCTCACATAA |
| Shewanella sp MR-4 | Shewmr4_3074 | -203 | 3.9 | AAACTTGCGTCACCTCACATAA |
| Shewanella sp MR-7 | Shewmr7_0898 | -204 | 4 | AAACTTGCATCAGCTCACATAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3189 | -251 | 4.5 | ATATTTGACCATGTTCAAATAT |
| Shewanella loihica PV-4 | Shew_0671 | -217 | 4 | AATAGTGATGAGGTTAATATAG |
| Shewanella pealeana ATCC 700345 | Spea_0661 | -283 | 4.1 | TTATGTGCCATGCAACACATTG |
| Shewanella halifaxensis HAW-EB4 | Shal_3535 | -147 | 3.9 | AAATATGAGCTTGTTCCAAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_2004 | -157 | 4.3 | TAATGTGATTTTCAGAATAATT |
| Shewanella piezotolerans WP3 | swp_4060 | -318 | 4.3 | TGAGGTGATGCATATCATAAAA |
|
Position: -95
Score: 4.4 Sequence: TTATTTGACGCAGTTAACACAA
Locus tag: Shal_2063
|
||||
| Shal_2063 | -95 | 4.4 | TTATTTGACGCAGTTAACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: apbE | ||||
| Ortholog function: thiamin biosynthesis lipoprotein ApbE | ||||
| Shewanella oneidensis MR-1 | SO1418 | -91 | 3.8 | ATCTATGAGTTAGCTAACACTT |
| Shewanella loihica PV-4 | Shew_1971 | -99 | 4.9 | TATTTTGATCTGCTTAACAAAA |
| Shewanella pealeana ATCC 700345 | Spea_2090 | -32 | 4.4 | TTATTTGACACAGTTAACACTA |
| Shewanella halifaxensis HAW-EB4 | Shal_2063 | -95 | 4.4 | TTATTTGACGCAGTTAACACAA |
| Shewanella piezotolerans WP3 | swp_2515 | -105 | 4.4 | TTGTTTGACAGAGATAACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_2280 | -209 | 4.5 | ATATTTGACCCAGTTAACACAT |
|
Position: -93
Score: 4.1 Sequence: TTGTGTTAACTGCGTCAAATAA
Locus tag: Shal_2064
|
||||
| Shal_2064 | -93 | 4.1 | TTGTGTTAACTGCGTCAAATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1419 | ||||
| Ortholog function: lipoprotein, putative | ||||
| Shewanella oneidensis MR-1 | SO1419 | -117 | 3.9 | AAGTGTTAGCTAACTCATAGAT |
| Shewanella loihica PV-4 | Shew_1972 | -120 | 4.5 | TTTTGTTAAGCAGATCAAAATA |
| Shewanella pealeana ATCC 700345 | Spea_2091 | -120 | 4.2 | TAGTGTTAACTGTGTCAAATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2064 | -93 | 4.1 | TTGTGTTAACTGCGTCAAATAA |
| Shewanella piezotolerans WP3 | swp_2516 | -119 | 4.5 | AAATGTTATCTCTGTCAAACAA |
| Shewanella sediminis HAW-EB3 | Ssed_2279 | -159 | 4.2 | ATGTGTTAACTGGGTCAAATAT |
|
Position: -221
Score: 4.5 Sequence: AGATTTGATCTAGATCAACTTT
Position: -178
Score: 4.6 Sequence: TTTTTTGATATAGCTCAAGTAT
Locus tag: Shal_2197
|
||||
| Shal_2197 | -221 | 4.5 | AGATTTGATCTAGATCAACTTT | |
| -178 | 4.6 | TTTTTTGATATAGCTCAAGTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccoN | ||||
| Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN | ||||
| Shewanella oneidensis MR-1 | SO2364 | -173 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| -125 | 4.1 | AAATGTGAAGGATAACGCATTG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1959 | -171 | 4.2 | TTTTTTGACATTGCTCAAGTAT |
| Shewanella sp W3-18-1 | Sputw3181_2046 | -171 | 4.2 | TTTTTTGACATTGCTCAAGTAT |
| Shewanella sp ANA-3 | Shewana3_2107 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella sp MR-4 | Shewmr4_2006 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella sp MR-7 | Shewmr7_1969 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella baltica OS155 | Sbal_2201 | -173 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella baltica OS155 | Sbal_4487 | -173 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella denitrificans OS217 | Sden_1851 | -182 | 4.7 | TTTTTTGATGTAGCTCAAGTAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2010 | -186 | 4.4 | TTTTTTGACTTAGCTCAAGTAT |
| Shewanella amazonensis SB2B | Sama_1791 | -180 | 4.3 | TTTTTTGACACAGCTCAAGTAT |
| Shewanella loihica PV-4 | Shew_1985 | -178 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella pealeana ATCC 700345 | Spea_2214 | -219 | 4.1 | TACCTTGATCTAGATCAACTTA |
| -176 | 4.6 | TTTTTTGATATAGCTCAAGTAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2197 | -221 | 4.5 | AGATTTGATCTAGATCAACTTT |
| -178 | 4.6 | TTTTTTGATATAGCTCAAGTAT | ||
| Shewanella piezotolerans WP3 | swp_2572 | -221 | 4.3 | TAGCTTGATCTAGATCAACTTT |
| -178 | 4.4 | TTTTTTGACATAGCTCAAGTAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_2211 | -177 | 4.4 | TTTTTTGACATAGCTCAAGTAT |
| Shewanella woodyi ATCC 51908 | Swoo_2425 | -220 | 4.3 | TAGCTTGATCTAGATCAACTTT |
| -177 | 4.4 | TTTTTTGACATAGCTCAAGTAT | ||
|
Position: -162
Score: 4.3 Sequence: AAATGTGATGTTTAACTCAAAC
Locus tag: Shal_2256
|
||||
| Shal_2256 | -162 | 4.3 | AAATGTGATGTTTAACTCAAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fumB | ||||
| Ortholog function: Fumarate hydratase class I, aerobic (EC 4.2.1.2) | ||||
| Shewanella oneidensis MR-1 | SO2222 | -105 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1807 | -103 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella sp W3-18-1 | Sputw3181_2218 | -103 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella sp ANA-3 | Shewana3_2302 | -104 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella sp MR-4 | Shewmr4_2124 | -104 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella sp MR-7 | Shewmr7_2200 | -104 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella baltica OS155 | Sbal_1918 | -103 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella denitrificans OS217 | Sden_1912 | -131 | 3.9 | AAATGTGATGTAGCCCCAAAAG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2156 | -122 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella amazonensis SB2B | Sama_1688 | -144 | 4.2 | ACTTGTGATGTAGCCCAAAGAT |
| Shewanella loihica PV-4 | Shew_1904 | -111 | 3.9 | AAATGTGATGTTCCCCTAAAAG |
| -73 | 4.8 | TATTGTGAACGGATTCAAAAAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2038 | -162 | 4.3 | AAATGTGATGTTTAACTCAAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_2256 | -162 | 4.3 | AAATGTGATGTTTAACTCAAAC |
| Shewanella piezotolerans WP3 | swp_2633 | -162 | 4.4 | AAATGTGATGTTTAACTCAAAG |
| Shewanella sediminis HAW-EB3 | Ssed_2358 | -194 | 3.8 | AAATGTGATATTCCCCTAAAAG |
|
Position: -212
Score: 5 Sequence: TTACGTGATCTCCATCACCTTT
Position: -91
Score: 3.6 Sequence: AAGCTTGACGCATATCAATAAT
Locus tag: Shal_2261
|
||||
| Shal_2261 | -212 | 5 | TTACGTGATCTCCATCACCTTT | |
| -91 | 3.6 | AAGCTTGACGCATATCAATAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyaA | ||||
| Ortholog function: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1) | ||||
| Shewanella oneidensis MR-1 | SO2099 | -105 | 4 | ATTCTTGATATGCATCAATAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2088 | -167 | 3.7 | AAATTAGATCTGCGTCATGTTA |
| -107 | 4 | ATTCTTGATATACATCAATAAT | ||
| Shewanella sp W3-18-1 | Sputw3181_1924 | -167 | 3.7 | AAATTAGATCTGCGTCATGTTA |
| -107 | 4 | ATTCTTGATATACATCAATAAT | ||
| Shewanella sp ANA-3 | Shewana3_1880 | -166 | 3.9 | AAATTAGATCTGCATCATGTTA |
| -106 | 4.2 | ATTCTTGATATGCATCAAGAAT | ||
| Shewanella sp MR-4 | Shewmr4_1822 | -166 | 3.9 | AAATTAGATCTGCATCATGTTA |
| -106 | 4.2 | ATTCTTGATATGCATCAAGAAT | ||
| Shewanella sp MR-7 | Shewmr7_2155 | -166 | 3.9 | AAATTAGATCTGCATCATGTTA |
| -106 | 4.2 | ATTCTTGATATGCATCAAGAAT | ||
| Shewanella baltica OS155 | Sbal_1889 | -229 | 3.9 | TTAAGTGACCGATTTCATCCAA |
| -167 | 3.7 | AAATTAGATCTACGTCATGTTA | ||
| -107 | 4.2 | ATTCTTGATATACATCAAGAAT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2103 | -174 | 3.8 | TTTTGTTAACTTGATCAACATC |
| -168 | 4.4 | TAACTTGATCAACATCATAAAT | ||
| Shewanella amazonensis SB2B | Sama_1679 | -172 | 3.4 | AAGCATGACACACCTCATGTTA |
| Shewanella loihica PV-4 | Shew_1765 | -164 | 3.8 | AAACTTGATCCAGCTCATAGCT |
| -103 | 3.7 | AATGTTGACATACATCAACATT | ||
| Shewanella pealeana ATCC 700345 | Spea_2033 | -211 | 4.6 | TTACGTGACCACGATCACCTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2261 | -212 | 5 | TTACGTGATCTCCATCACCTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1908 | -162 | 4 | AAAGATGATCTAGTTCATATTG |
|
Position: -64
Score: 5.1 Sequence: ATTTGTGACTCTGGTCACAAAT
Locus tag: Shal_2329
|
||||
| Shal_2329 | -64 | 5.1 | ATTTGTGACTCTGGTCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2871 | ||||
| Ortholog function: arsenate reductase (EC 1.20.4.1) | ||||
| Shewanella loihica PV-4 | Shew_1840 | -51 | 3.8 | CCCTGTGACTCGGCTCACCTTT |
| Shewanella pealeana ATCC 700345 | Spea_1970 | -64 | 4.8 | CATTGTGACTATGATCACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2329 | -64 | 5.1 | ATTTGTGACTCTGGTCACAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_2438 | -64 | 5 | TTTTGTGACTTTGCTCACCTTT |
| Shewanella woodyi ATCC 51908 | Swoo_2168 | -66 | 4.2 | CCTTGTGACTTCGCTCACCTTT |
|
Position: -196
Score: 3.6 Sequence: TTTTGTGCGTTCTTGCTCACTA
Position: -154
Score: 3.9 Sequence: AGTTGTGAAGTGTATCATTGTT
Locus tag: Shal_2335
|
||||
| Shal_2335 | -196 | 3.6 | TTTTGTGCGTTCTTGCTCACTA | |
| -154 | 3.9 | AGTTGTGAAGTGTATCATTGTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydhD | ||||
| Ortholog function: Probable monothiol glutaredoxin ydhD | ||||
| Shewanella oneidensis MR-1 | SO2880 | -157 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1688 | -156 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella sp W3-18-1 | Sputw3181_2337 | -156 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella sp ANA-3 | Shewana3_1640 | -157 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella sp MR-4 | Shewmr4_1573 | -157 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella sp MR-7 | Shewmr7_1648 | -157 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella baltica OS155 | Sbal_1783 | -156 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella denitrificans OS217 | Sden_1640 | -137 | 4.5 | TTTTGTGATGTGCATCATTGTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1748 | -155 | 4.5 | TTTTGTGATGTGAATCATTGTT |
| Shewanella amazonensis SB2B | Sama_1919 | -173 | 4.2 | ATCTGTGATGTGAATCATTCTT |
| Shewanella loihica PV-4 | Shew_1835 | -164 | 4.2 | AGTTGTGATGTGAATCATTGTT |
| Shewanella pealeana ATCC 700345 | Spea_1964 | -154 | 3.6 | ACTTGTGAAGTGTATCATTGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2335 | -154 | 3.9 | AGTTGTGAAGTGTATCATTGTT |
| Shewanella piezotolerans WP3 | swp_2753 | -153 | 3.6 | ACTTGTGAAGTGTATCATTGTT |
|
Position: -93
Score: 3.7 Sequence: AACAATGATACACTTCACAACT
Locus tag: Shal_2336
|
||||
| Shal_2336 | -93 | 3.7 | AACAATGATACACTTCACAACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodB | ||||
| Ortholog function: superoxide dismutase [Fe] (EC 1.15.1.1) | ||||
| Shewanella oneidensis MR-1 | SO2881 | -91 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1687 | -91 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella sp W3-18-1 | Sputw3181_2338 | -91 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella sp ANA-3 | Shewana3_1639 | -91 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella sp MR-4 | Shewmr4_1572 | -91 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella sp MR-7 | Shewmr7_1647 | -91 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella baltica OS155 | Sbal_1782 | -90 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella denitrificans OS217 | Sden_1639 | -106 | 4.3 | AACAATGATGCACATCACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1747 | -102 | 4.2 | AACAATGATTCACATCACAAAA |
| Shewanella amazonensis SB2B | Sama_1920 | -91 | 4.2 | AAGAATGATTCACATCACAGAT |
| Shewanella loihica PV-4 | Shew_1834 | -89 | 3.8 | AACAATGATTCACATCACAACT |
| Shewanella halifaxensis HAW-EB4 | Shal_2336 | -93 | 3.7 | AACAATGATACACTTCACAACT |
|
Position: -62
Score: 4.1 Sequence: TATTTTGATATTGATGAAATAA
Locus tag: Shal_2355
|
||||
| Shal_2355 | -62 | 4.1 | TATTTTGATATTGATGAAATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycbW | ||||
| Ortholog function: probable membrane protein YcbW | ||||
| Shewanella oneidensis MR-1 | SO2591 | -63 | 3.8 | TATTTTGATATTGAATAAAATA |
| -34 | 3.8 | TGATGTGCCAGTGTTCAAATAG | ||
| -2 | 3.7 | TTATGTTATTATTGCCGCAAAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2193 | -63 | 3.8 | TATTTTGATATTGAATAAAATA |
| -34 | 4 | TTATGTGCGAGTGTTCAAATAG | ||
| -2 | 3.8 | TTATGTTATTAATGCCGCAAAA | ||
| Shewanella sp W3-18-1 | Sputw3181_1816 | -63 | 3.8 | TATTTTGATATTGAATAAAATA |
| -34 | 3.7 | TGATGTGCGAGTGTTCAAATAG | ||
| -2 | 3.8 | TTATGTTATTAATGCCGCAAAA | ||
| Shewanella sp ANA-3 | Shewana3_1787 | -63 | 3.8 | TATTTTGATATTGAATAAAATA |
| -34 | 3.7 | TGATGTGCGAGTGTTCAAATAG | ||
| -2 | 4 | TTATGTTATTATTGCCACAAAA | ||
| Shewanella sp MR-4 | Shewmr4_1682 | -63 | 3.8 | TATTTTGATATTGAATAAAATA |
| -34 | 3.8 | TGATGTGCCAGTGTTCAAATAG | ||
| -2 | 4 | TTATGTTATTATTGCCACAAAA | ||
| Shewanella sp MR-7 | Shewmr7_1757 | -63 | 3.8 | TATTTTGATATTGAATAAAATA |
| -34 | 3.7 | TGATGTGCGAGTGTTCAAATAG | ||
| -2 | 4 | TTATGTTATTATTGCCACAAAA | ||
| Shewanella baltica OS155 | Sbal_2438 | -2 | 4.2 | TTATGTTATTAATGCCACAAAA |
| Shewanella denitrificans OS217 | Sden_1731 | -139 | 4.2 | ATTTATGAGTGCGATCAAAATT |
| Shewanella amazonensis SB2B | Sama_1594 | -2 | 3.9 | TTATGTTATTAATGCCACATAC |
| Shewanella loihica PV-4 | Shew_1811 | -94 | 4.6 | TGTTGTAATCTATATCATATTT |
| Shewanella pealeana ATCC 700345 | Spea_1944 | -62 | 4.1 | TATTTTGATATTGATGAAATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_2355 | -62 | 4.1 | TATTTTGATATTGATGAAATAA |
| Shewanella piezotolerans WP3 | swp_2809 | -239 | 3.8 | TTTAATAATATAGATCATAAAA |
| -143 | 4.1 | TATTTTGATATTGATGAAATTA | ||
| -2 | 4 | ATATGGAATTTCTATCACCTTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_2474 | -94 | 4.6 | TATTGTTATTCAACTCATATTT |
| Shewanella woodyi ATCC 51908 | Swoo_2142 | -52 | 4 | TACTTTGATATTGAACAAAATA |
|
Position: -114
Score: 4.5 Sequence: TAATGTGATCTAGCTTTAATTT
Locus tag: Shal_2408
|
||||
| Shal_2408 | -114 | 4.5 | TAATGTGATCTAGCTTTAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmgR | ||||
| Ortholog function: Tyrosine degradation transcriptional regulator, LysR family | ||||
| Shewanella oneidensis MR-1 | SO1965 | -148 | 4.4 | TACTGTGATCTTCTTATCAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1672 | -148 | 4.8 | TTATGTGATCTTGTTATCAATT |
| Shewanella sp W3-18-1 | Sputw3181_2353 | -148 | 4.8 | TTATGTGATCTTGTTATCAATT |
| Shewanella sp ANA-3 | Shewana3_2480 | -148 | 4.6 | TAGTGTGATCTTCTTATCAATT |
| -92 | 3.9 | ATCTGTTATCTCAATCTAAAAA | ||
| Shewanella sp MR-4 | Shewmr4_2290 | -148 | 4.6 | TAGTGTGATCTTCTTATCAATT |
| -92 | 3.9 | ATCTGTTATCTCAATCTAAAAA | ||
| Shewanella sp MR-7 | Shewmr7_2362 | -148 | 4.6 | TAGTGTGATCTTCTTATCAATT |
| -92 | 3.9 | ATCTGTTATCTCTATCTAAAAA | ||
| Shewanella baltica OS155 | Sbal_2614 | -148 | 4.7 | TAGTGTGATCTTGTTATCAATT |
| Shewanella denitrificans OS217 | Sden_2161 | -146 | 4.3 | CGTTGTGATCTAGCTATCAATT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2325 | -135 | 5.1 | ATATGTGATCTAACTTACAATT |
| Shewanella amazonensis SB2B | Sama_1570 | -135 | 4.7 | ATATGTGATCTGGGTATCAATT |
| Shewanella loihica PV-4 | Shew_2153 | -115 | 5.1 | TTATGTGATCTAAGTAACAATT |
| Shewanella pealeana ATCC 700345 | Spea_1875 | -114 | 4.3 | TAATGTGATCTAGGTTCAATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2408 | -114 | 4.5 | TAATGTGATCTAGCTTTAATTT |
| Shewanella piezotolerans WP3 | swp_2869 | -115 | 4.9 | TAATGTGATCTTGTTATCAATT |
| Shewanella sediminis HAW-EB3 | Ssed_2686 | -116 | 4.5 | ATTTGTGACATACCTATCAATT |
| Shewanella woodyi ATCC 51908 | Swoo_1933 | -116 | 4.5 | ATGTGTGATCTAAGTATCAATT |
|
Position: -63
Score: 3.9 Sequence: AAATTAAAGCTAGATCACATTA
Locus tag: Shal_2409
|
||||
| Shal_2409 | -63 | 3.9 | AAATTAAAGCTAGATCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmgA | ||||
| Ortholog function: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) | ||||
| Shewanella oneidensis MR-1 | SO1963 | -92 | 3.8 | AATTGATAAGAAGATCACAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1671 | -66 | 4.1 | AATTGATAACAAGATCACATAA |
| Shewanella sp W3-18-1 | Sputw3181_2354 | -66 | 4.1 | AATTGATAACAAGATCACATAA |
| Shewanella sp ANA-3 | Shewana3_2481 | -144 | 3.9 | TTTTTAGATTGAGATAACAGAT |
| -88 | 3.9 | AATTGATAAGAAGATCACACTA | ||
| Shewanella sp MR-4 | Shewmr4_2291 | -144 | 3.9 | TTTTTAGATTGAGATAACAGAT |
| -88 | 3.9 | AATTGATAAGAAGATCACACTA | ||
| Shewanella sp MR-7 | Shewmr7_2363 | -144 | 3.9 | TTTTTAGATAGAGATAACAGAT |
| -88 | 3.9 | AATTGATAAGAAGATCACACTA | ||
| Shewanella baltica OS155 | Sbal_2615 | -144 | 3.5 | TTTTTAGATTGAGATAACGGAT |
| -88 | 4 | AATTGATAACAAGATCACACTA | ||
| Shewanella denitrificans OS217 | Sden_2162 | -122 | 3.6 | AATTGATAGCTAGATCACAACG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2326 | -126 | 3.5 | TTTGTTGATCTTTACCACTAAA |
| -106 | 5 | AATTGTAAGTTAGATCACATAT | ||
| Shewanella amazonensis SB2B | Sama_1569 | -78 | 4.5 | AATTGATACCCAGATCACATAT |
| Shewanella loihica PV-4 | Shew_2154 | -61 | 5.1 | AATTGTTACTTAGATCACATAA |
| Shewanella pealeana ATCC 700345 | Spea_1874 | -63 | 4 | AAATTGAACCTAGATCACATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_2409 | -63 | 3.9 | AAATTAAAGCTAGATCACATTA |
| Shewanella piezotolerans WP3 | swp_2870 | -84 | 3.5 | TTTTTTGCTGTTGTTAGCAACT |
| -61 | 4.1 | AATTGATAACAAGATCACATTA | ||
|
Position: -156
Score: 4.5 Sequence: TAATTTGACTGAGCGCACATTT
Locus tag: Shal_2472
|
||||
| Shal_2472 | -156 | 4.5 | TAATTTGACTGAGCGCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_1504 | ||||
| Ortholog function: cytochrome c3 | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_1504 | -250 | 4 | TTACATGATATAGCGCACATCT |
| -144 | 3.9 | TAATTTGAGATTGTTTATAAAT | ||
| Shewanella pealeana ATCC 700345 | Spea_1806 | -155 | 4.5 | TAATTTGATGGAGCGCACGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2472 | -156 | 4.5 | TAATTTGACTGAGCGCACATTT |
| Shewanella piezotolerans WP3 | swp_2923 | -184 | 4.3 | TAGTTTGATGGAGCGCACGTTT |
|
Position: -86
Score: 4.9 Sequence: ATCTGTGATCTGGATCACCGAT
Locus tag: Shal_2493
|
||||
| Shal_2493 | -86 | 4.9 | ATCTGTGATCTGGATCACCGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2273 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella sp W3-18-1 | Sputw3181_1735 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella baltica OS155 | Sbal_2519 | -66 | 3.8 | TGCCGTGATTCACATCCCAGTT |
| Shewanella denitrificans OS217 | Sden_2187 | -274 | 3.7 | TGGATTGATGCAAATTACAAAA |
| -186 | 3.8 | AAGGGCGACAAACATCACAATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2347 | -74 | 4.1 | ACGTGTGATGTAACTTACGTTA |
| -19 | 3.7 | AAGTTTGAAAGGAATAACAATG | ||
| Shewanella amazonensis SB2B | Sama_1423 | -80 | 3.7 | TTTTGTGACGACTGTCGCCGTG |
| Shewanella pealeana ATCC 700345 | Spea_1784 | -86 | 4.4 | AACCGTGATCTGGATCACTGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2493 | -86 | 4.9 | ATCTGTGATCTGGATCACCGAT |
| Shewanella piezotolerans WP3 | swp_2955 | -20 | 4.6 | AACTGTGACCTAGTTCACGGAT |
| Shewanella sediminis HAW-EB3 | Ssed_2818 | -86 | 4.2 | GATCGTGACCTGTGTCACAGTT |
| Shewanella woodyi ATCC 51908 | Swoo_1833 | -87 | 4.8 | ATTTGTGATCTAAATCACGCCT |
|
Position: -85
Score: 4.2 Sequence: CAGAGTGATTCAAGTCACACTT
Locus tag: Shal_2568
|
||||
| Shal_2568 | -85 | 4.2 | CAGAGTGATTCAAGTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rarD | ||||
| Ortholog function: RarD protein | ||||
| Shewanella pealeana ATCC 700345 | Spea_1861 | -85 | 3.9 | CAAGGTGATTCAAGTCACACTC |
| Shewanella halifaxensis HAW-EB4 | Shal_2568 | -85 | 4.2 | CAGAGTGATTCAAGTCACACTT |
| Shewanella sediminis HAW-EB3 | Ssed_0706 | -88 | 4.8 | TAGAGTGATCCAGCTCACATAC |
| Shewanella woodyi ATCC 51908 | Swoo_4258 | -44 | 4.5 | CATAGTGATCAATATCACATTC |
|
Position: -312
Score: 4.2 Sequence: AGTTGTTAACTGGATCTCAAAT
Locus tag: Shal_2591
|
||||
| Shal_2591 | -312 | 4.2 | AGTTGTTAACTGGATCTCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Spea_1673 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2377 | -298 | 3.8 | AGTTGTTAAGTGCCTCCCAAAT |
| Shewanella sp W3-18-1 | Sputw3181_1632 | -298 | 3.8 | AGTTGTTAAGTGCCTCCCAAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2472 | -298 | 4.1 | ACTTGTTATCCAGCTCTCACTT |
| Shewanella amazonensis SB2B | Sama_1499 | -278 | 3.9 | CTATGTTAGCTGTGTCGCAAAT |
| Shewanella loihica PV-4 | Shew_2389 | -301 | 4 | AGATGTTAACTAGCTCCCAAAT |
| Shewanella pealeana ATCC 700345 | Spea_1673 | -311 | 4.2 | AGTTGTTAACTGGATCTCAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2591 | -312 | 4.2 | AGTTGTTAACTGGATCTCAAAT |
| Shewanella piezotolerans WP3 | swp_1953 | -311 | 4 | AGTTGTTAAGTCGCTCTCAATT |
| Shewanella sediminis HAW-EB3 | Ssed_1709 | -311 | 3.9 | AGTTGTTAAGTGGCTCCCAATT |
| Shewanella woodyi ATCC 51908 | Swoo_2882 | -310 | 4.2 | AGTTGTTAACTGGATCTCAAAT |
|
Position: -119
Score: 3.9 Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: Shal_2671
|
||||
| Shal_2671 | -119 | 3.9 | AAGTTAGAATCAGATCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadI | ||||
| Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) | ||||
| Shewanella oneidensis MR-1 | SO3089 | -131 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2460 | -136 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp W3-18-1 | Sputw3181_1548 | -136 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp ANA-3 | Shewana3_1460 | -135 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp MR-4 | Shewmr4_1407 | -135 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp MR-7 | Shewmr7_1472 | -135 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella baltica OS155 | Sbal_2761 | -136 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella denitrificans OS217 | Sden_1529 | -109 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2677 | -104 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella amazonensis SB2B | Sama_2168 | -112 | 3.6 | AAGTTAGAATCGGGTCACACTT |
| Shewanella loihica PV-4 | Shew_2426 | -134 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella pealeana ATCC 700345 | Spea_2599 | -116 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2671 | -119 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella piezotolerans WP3 | swp_3140 | -122 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sediminis HAW-EB3 | Ssed_1628 | -151 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella woodyi ATCC 51908 | Swoo_3027 | -138 | 4.1 | AAGTTAGAATCAGATCACATTT |
|
Position: -319
Score: 4.6 Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: Shal_2672
|
||||
| Shal_2672 | -319 | 4.6 | AAGTGTGATCTGATTCTAACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3090 | ||||
| Ortholog function: MoxR-like ATPase in aerotolerance operon | ||||
| Shewanella oneidensis MR-1 | SO3090 | -165 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2461 | -97 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella sp W3-18-1 | Sputw3181_1547 | -97 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella sp ANA-3 | Shewana3_1459 | -160 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella sp MR-4 | Shewmr4_1406 | -160 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella sp MR-7 | Shewmr7_1471 | -160 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella baltica OS155 | Sbal_2762 | -148 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella denitrificans OS217 | Sden_1528 | -157 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2678 | -167 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella amazonensis SB2B | Sama_2169 | -137 | 4.2 | AAGTGTGACCCGATTCTAACTT |
| Shewanella loihica PV-4 | Shew_2427 | -296 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella pealeana ATCC 700345 | Spea_2600 | -306 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2672 | -319 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella piezotolerans WP3 | swp_3141 | -97 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella sediminis HAW-EB3 | Ssed_1627 | -316 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella woodyi ATCC 51908 | Swoo_3028 | -306 | 4.8 | AAATGTGATCTGATTCTAACTT |
|
Position: -74
Score: 3.7 Sequence: ATTTGAGCCTTGGCTCATAAAT
Locus tag: Shal_2680
|
||||
| Shal_2680 | -74 | 3.7 | ATTTGAGCCTTGGCTCATAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: putP | ||||
| Ortholog function: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2469 | -60 | 4.2 | AGGTTAGATTTTGATCACATTT |
| -30 | 3.8 | TAATGGGTTCTTGCTCAAACAT | ||
| Shewanella sp W3-18-1 | Sputw3181_1539 | -60 | 4.4 | ATGTTAGATTTTGATCACATTT |
| -30 | 3.8 | TAATGGGTTCTTGCTCAAACAT | ||
| Shewanella sp ANA-3 | Shewana3_1451 | -73 | 3.8 | TAATGGGTTCTTGCTCAAACAT |
| Shewanella sp MR-4 | Shewmr4_1398 | -73 | 3.8 | TAATGGGTTCTTGCTCAAACAT |
| Shewanella sp MR-7 | Shewmr7_1463 | -73 | 3.8 | TAATGGGTTCTTGCTCAAACAT |
| Shewanella baltica OS155 | Sbal_2770 | -102 | 3.8 | AGGTTAGATTTTAATCACACTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2686 | -64 | 4.5 | AAGTGTGAACTAGATCGAACTT |
| Shewanella amazonensis SB2B | Sama_2177 | -77 | 3.8 | AATTGGGATCCGACCCAAACTT |
| Shewanella pealeana ATCC 700345 | Spea_2608 | -104 | 3.8 | TGGTTAGATCTTCATCACATTC |
| Shewanella halifaxensis HAW-EB4 | Shal_2680 | -74 | 3.7 | ATTTGAGCCTTGGCTCATAAAT |
| Shewanella piezotolerans WP3 | swp_3151 | -72 | 3.7 | ATTATTGAGCTATAGCTCAAAT |
| -70 | 4.3 | TATTGAGCTATAGCTCAAATAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1619 | -72 | 3.9 | TATTGAGCTTCCTATCAAACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3036 | -86 | 4.4 | GTATATGACCCAGTTCACATTT |
|
Position: -235
Score: 5.3 Sequence: AAGTGTGATATCGCTCACAAAA
Locus tag: Shal_2707
|
||||
| Shal_2707 | -235 | 5.3 | AAGTGTGATATCGCTCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3719 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_3037 | -207 | 4.5 | TTTTGTGAGCAAGCTAAAATTA |
| -135 | 3.9 | AATTGATATTTAAATCACCTAG | ||
| Shewanella sp W3-18-1 | Sputw3181_0908 | -207 | 4.5 | TTTTGTGAGCAAGCTAAAATTA |
| -135 | 3.9 | AATTGATATTTAAATCACCTAG | ||
| Shewanella sp ANA-3 | Shewana3_0872 | -317 | 4.1 | TTTTGTGAGCAAGCTAGAATTA |
| Shewanella sp MR-4 | Shewmr4_3065 | -320 | 4.1 | TTTTGTGAGCAAGCTAGAATTA |
| Shewanella sp MR-7 | Shewmr7_0907 | -318 | 4.1 | TTTTGTGAGCAAGCTAGAATTA |
| Shewanella baltica OS155 | Sbal_3399 | -316 | 4.4 | TTTTGTGAGACAGTTAAAACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0814 | -144 | 4 | TTTTGCGCGGCAGTTCACATTG |
| -83 | 4.4 | TGACGTGATCTGTTTCATGTAA | ||
| Shewanella amazonensis SB2B | Sama_2881 | -130 | 3.9 | AAATGTGAGGCAGTTGGAATTT |
| Shewanella loihica PV-4 | Shew_0679 | -126 | 4.1 | ATTTGTGACATCGGTAAACTTA |
| Shewanella pealeana ATCC 700345 | Spea_0674 | -140 | 4 | TTTTGTGAGGTAGGTAAAGCTA |
| -98 | 3.8 | CCTCGTGATCTGTTTCATGTAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3524 | -139 | 4 | TTTTGTGAGGTAGGTAAAGCTA |
| -97 | 3.8 | CCTCGTGATCTGTTTCATGTAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2707 | -235 | 5.3 | AAGTGTGATATCGCTCACAAAA |
| Shewanella piezotolerans WP3 | swp_4045 | -124 | 3.9 | TTTTGTGAGGTAGGTAAAGGTA |
| -77 | 3.7 | TGATCTGATTCAATTAAAAATA | ||
| Shewanella sediminis HAW-EB3 | Ssed_3789 | -120 | 4.9 | ATTTGTGATGCAGGTAAAATTT |
| -78 | 4 | TGCCGTGATCTGTTTCATGTAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0794 | -123 | 4.3 | AATTGTGATATAGGTAAGAGTA |
|
Position: -250
Score: 4.5 Sequence: TAAAGAGATCGAGATCACACTA
Position: -140
Score: 3.8 Sequence: TTAAGAGATGTTTATCGCAATC
Position: -111
Score: 3.7 Sequence: TTTCGGGACGGTTATCACAACT
Locus tag: Shal_2750
|
||||
| Shal_2750 | -250 | 4.5 | TAAAGAGATCGAGATCACACTA | |
| -140 | 3.8 | TTAAGAGATGTTTATCGCAATC | ||
| -111 | 3.7 | TTTCGGGACGGTTATCACAACT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nadC | ||||
| Ortholog function: di-and tricarboxylate transporter | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_3393 | -262 | 4.5 | AAGCGTGATTAGTGTCACAGTT |
| -154 | 4.1 | TTTGGTGATTTTTGTCGCGTAA | ||
| -125 | 3.9 | TTTTGCGATTTTTATCGACAAA | ||
| -92 | 3.8 | TGATGTGATAAAGCTACAAAAT | ||
| -57 | 4.4 | ATGTGTGATCTATGCCATAAAT | ||
| Shewanella sp W3-18-1 | Sputw3181_0550 | -262 | 4.8 | AAGTGTGATTAGTGTCACAGTT |
| -154 | 4.1 | TTTGGTGATTTTTGTCGCGTAA | ||
| -125 | 3.9 | TTTTGCGATTTTTATCGACAAA | ||
| -92 | 3.8 | TGATGTGATAAAGCTACAAAAT | ||
| -57 | 3.8 | GTGTGTGATCTATGCCATAAAT | ||
| Shewanella sp ANA-3 | Shewana3_0451 | -262 | 4.4 | AAGTTTGACATGGGTCACAGTT |
| Shewanella baltica OS155 | Sbal_0427 | -57 | 3.8 | AAGTGTGATCTATGCCCTAAAT |
| Shewanella pealeana ATCC 700345 | Spea_2663 | -262 | 4.3 | TAAAGTGATCGCGATCACACCG |
| -152 | 4.4 | AATAGTGACAAACATCACATCA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2750 | -250 | 4.5 | TAAAGAGATCGAGATCACACTA |
| -140 | 3.8 | TTAAGAGATGTTTATCGCAATC | ||
| Shewanella piezotolerans WP3 | swp_3241 | -123 | 3.8 | TTATGCGCCCTTCATCACCCTA |
| Shewanella sediminis HAW-EB3 | Ssed_1560 | -127 | 3.9 | AAAATAGATCTACTTCACCTAT |
|
Position: -279
Score: 4.7 Sequence: AAGTGTGATCTGTGTCAAGTTT
Position: -158
Score: 4.7 Sequence: AGTTGAGATATTTATCACATAA
Locus tag: Shal_2777
|
||||
| Shal_2777 | -279 | 4.7 | AAGTGTGATCTGTGTCAAGTTT | |
| -158 | 4.7 | AGTTGAGATATTTATCACATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Shewanella oneidensis MR-1 | SO1783 | -153 | 4 | CATAGAGATTTTTGTCACATAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1480 | -155 | 4.6 | CATTGGGATTTTTATCACATAA |
| Shewanella sp W3-18-1 | Sputw3181_2621 | -155 | 4.6 | CATTGGGATTTTTATCACATAA |
| Shewanella sp ANA-3 | Shewana3_2671 | -276 | 5 | AAGTGTGATCTTGTTCTCACTT |
| -153 | 4.4 | CATTGAGATTTTTGTCACATAA | ||
| Shewanella sp MR-4 | Shewmr4_2505 | -276 | 5 | AAGTGTGATCTTGTTCTCACTT |
| -153 | 4.4 | CATTGAGATTTTTGTCACATAA | ||
| Shewanella sp MR-7 | Shewmr7_2573 | -276 | 5 | AAGTGTGATCTTGTTCTCACTT |
| -153 | 4.4 | CATTGAGATTTTTGTCACATAA | ||
| Shewanella baltica OS155 | Sbal_1594 | -276 | 5 | AAGCGTGATGTTGATCACGTTT |
| Shewanella denitrificans OS217 | Sden_2415 | -148 | 3.9 | ATCTGCGGTATTTATCACATAA |
| Shewanella amazonensis SB2B | Sama_1214 | -228 | 3.8 | AAGTGTGATGAGTGTCACGCCG |
| Shewanella loihica PV-4 | Shew_2518 | -245 | 5.2 | ATATGTGATCTAGATCACGTTG |
| -155 | 4.2 | GATTGAGATATCTGTCACATAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2691 | -247 | 5.5 | TTATGTGATGCGTATCACACTT |
| -158 | 4.2 | AGTTGAGAGTTTTGTCACATAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2777 | -279 | 4.7 | AAGTGTGATCTGTGTCAAGTTT |
| -158 | 4.7 | AGTTGAGATATTTATCACATAA | ||
| Shewanella piezotolerans WP3 | swp_3271 | -280 | 4.6 | AAGCGTGATCTACGTCACACTG |
| -157 | 4.2 | AGTTGAGAGATTTGTCACATAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_1531 | -275 | 4.9 | AAGTGTGATCTTGGTCACGCTA |
| -158 | 4.3 | AGTTGAGACTTTTGTCACATAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_3123 | -272 | 4.7 | AATCGTGACTTATATCACTTAA |
| -157 | 4.2 | AGTTGGGACTTTTGTCACATAA | ||
|
Position: -305
Score: 4.5 Sequence: TTATGTGATAAATATCTCAACT
Position: -184
Score: 4.6 Sequence: AAACTTGACACAGATCACACTT
Locus tag: Shal_2778
|
||||
| Shal_2778 | -305 | 4.5 | TTATGTGATAAATATCTCAACT | |
| -184 | 4.6 | AAACTTGACACAGATCACACTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrD | ||||
| Ortholog function: periplasmic decaheme cytochrome c, MtrD | ||||
| Shewanella oneidensis MR-1 | SO1782 | -339 | 3.8 | TTATGTGACAAAAATCTCTATG |
| Shewanella sp ANA-3 | Shewana3_2672 | -295 | 4.4 | TTATGTGACAAAAATCTCAATG |
| -172 | 4.3 | AAGTGAGAACAAGATCACACTT | ||
| Shewanella sp MR-4 | Shewmr4_2506 | -295 | 4.4 | TTATGTGACAAAAATCTCAATG |
| -172 | 4.3 | AAGTGAGAACAAGATCACACTT | ||
| Shewanella sp MR-7 | Shewmr7_2574 | -295 | 4.4 | TTATGTGACAAAAATCTCAATG |
| -172 | 4.3 | AAGTGAGAACAAGATCACACTT | ||
| Shewanella baltica OS155 | Sbal_1593 | -304 | 3.8 | TTATGTGACAAAAATACCAATG |
| -181 | 4.8 | AAACGTGATCAACATCACGCTT | ||
| Shewanella amazonensis SB2B | Sama_1213 | -189 | 3.9 | CGGCGTGACACTCATCACACTT |
| Shewanella loihica PV-4 | Shew_2519 | -260 | 4.5 | TTATGTGACAGATATCTCAATC |
| -170 | 5.3 | CAACGTGATCTAGATCACATAT | ||
| Shewanella pealeana ATCC 700345 | Spea_2692 | -286 | 4.1 | TTATGTGACAAAACTCTCAACT |
| -197 | 5.4 | AAGTGTGATACGCATCACATAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2778 | -305 | 4.5 | TTATGTGATAAATATCTCAACT |
| -184 | 4.6 | AAACTTGACACAGATCACACTT | ||
| Shewanella piezotolerans WP3 | swp_3272 | -308 | 4.2 | TTATGTGACAAATCTCTCAACT |
| -185 | 4.6 | CAGTGTGACGTAGATCACGCTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1530 | -291 | 4 | TTATGTGACAAAAGTCTCAACT |
| -174 | 4.8 | TAGCGTGACCAAGATCACACTT | ||
|
Position: -264
Score: 4 Sequence: TTTTATTACATTTATCACGTAT
Locus tag: Shal_2784
|
||||
| Shal_2784 | -264 | 4 | TTTTATTACATTTATCACGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrC | ||||
| Ortholog function: surface localized decaheme cytochrome c lipoprotein, MtrC | ||||
| Shewanella oneidensis MR-1 | SO1778 | -248 | 3.7 | TGTTGTTTTTTTGCTCTCAATT |
| -190 | 3.5 | TAGAAAGATCCAAGTCACACAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1478 | -190 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp W3-18-1 | Sputw3181_2623 | -190 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp ANA-3 | Shewana3_2676 | -189 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp MR-4 | Shewmr4_2510 | -189 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp MR-7 | Shewmr7_2578 | -189 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella baltica OS155 | Sbal_1589 | -190 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2637 | -164 | 3.8 | TAGGCTGATCATCATCACACAA |
| Shewanella amazonensis SB2B | Sama_1208 | -230 | 3.9 | TTTTTTGATCTGAAACAGCTTT |
| -178 | 3.6 | TAGCCGGATCCAGTTCACACAT | ||
| Shewanella loihica PV-4 | Shew_2525 | -179 | 3.6 | TAGAAAGATCTCGGTCACACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2784 | -264 | 4 | TTTTATTACATTTATCACGTAT |
| Shewanella sediminis HAW-EB3 | Ssed_1525 | -191 | 4 | TAGGCTGATCTAGGTCACACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3125 | -288 | 3.7 | ATGAGTTACAACTTTCACACAT |
|
Position: -7
Score: 3.9 Sequence: AGCTATTATGAAGATCACAAAA
Locus tag: Shal_2785
|
||||
| Shal_2785 | -7 | 3.9 | AGCTATTATGAAGATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrA | ||||
| Ortholog function: periplasmic decaheme cytochrome c, MtrA | ||||
| Shewanella oneidensis MR-1 | SO1777 | -248 | 3.7 | TGTTGTTTTTTTGCTCTCAATT |
| -190 | 3.5 | TAGAAAGATCCAAGTCACACAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1477 | -190 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp W3-18-1 | Sputw3181_2624 | -190 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp ANA-3 | Shewana3_2677 | -189 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp MR-4 | Shewmr4_2511 | -189 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp MR-7 | Shewmr7_2579 | -189 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella baltica OS155 | Sbal_1588 | -190 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2638 | -164 | 3.8 | TAGGCTGATCATCATCACACAA |
| Shewanella amazonensis SB2B | Sama_1207 | -230 | 3.9 | TTTTTTGATCTGAAACAGCTTT |
| -178 | 3.6 | TAGCCGGATCCAGTTCACACAT | ||
| Shewanella loihica PV-4 | Shew_2526 | -179 | 3.6 | TAGAAAGATCTCGGTCACACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2785 | -264 | 4 | TTTTATTACATTTATCACGTAT |
| Shewanella sediminis HAW-EB3 | Ssed_1524 | -191 | 4 | TAGGCTGATCTAGGTCACACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3126 | -288 | 3.7 | ATGAGTTACAACTTTCACACAT |
|
Position: -52
Score: 3.5 Sequence: TTGTTTGAAATTTTGCAGATAT
Locus tag: Shal_2812
|
||||
| Shal_2812 | -52 | 3.5 | TTGTTTGAAATTTTGCAGATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hydC | ||||
| Ortholog function: Ni,Fe-hydrogenase I cytochrome b subunit | ||||
| Shewanella oneidensis MR-1 | SO2097 | -105 | 4 | ATTCTTGATATGCATCAATAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2090 | -167 | 3.7 | AAATTAGATCTGCGTCATGTTA |
| -107 | 4 | ATTCTTGATATACATCAATAAT | ||
| Shewanella sp W3-18-1 | Sputw3181_1922 | -167 | 3.7 | AAATTAGATCTGCGTCATGTTA |
| -107 | 4 | ATTCTTGATATACATCAATAAT | ||
| Shewanella sp ANA-3 | Shewana3_1878 | -166 | 3.9 | AAATTAGATCTGCATCATGTTA |
| -106 | 4.2 | ATTCTTGATATGCATCAAGAAT | ||
| Shewanella sp MR-4 | Shewmr4_1820 | -166 | 3.9 | AAATTAGATCTGCATCATGTTA |
| -106 | 4.2 | ATTCTTGATATGCATCAAGAAT | ||
| Shewanella sp MR-7 | Shewmr7_2157 | -166 | 3.9 | AAATTAGATCTGCATCATGTTA |
| -106 | 4.2 | ATTCTTGATATGCATCAAGAAT | ||
| Shewanella baltica OS155 | Sbal_1887 | -229 | 3.9 | TTAAGTGACCGATTTCATCCAA |
| -167 | 3.7 | AAATTAGATCTACGTCATGTTA | ||
| -107 | 4.2 | ATTCTTGATATACATCAAGAAT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2105 | -174 | 3.8 | TTTTGTTAACTTGATCAACATC |
| -168 | 4.4 | TAACTTGATCAACATCATAAAT | ||
| Shewanella amazonensis SB2B | Sama_1677 | -172 | 3.4 | AAGCATGACACACCTCATGTTA |
| Shewanella loihica PV-4 | Shew_1763 | -164 | 3.8 | AAACTTGATCCAGCTCATAGCT |
| -103 | 3.7 | AATGTTGACATACATCAACATT | ||
| Shewanella pealeana ATCC 700345 | Spea_2031 | -211 | 4.6 | TTACGTGACCACGATCACCTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2263 | -212 | 5 | TTACGTGATCTCCATCACCTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1906 | -162 | 4 | AAAGATGATCTAGTTCATATTG |
|
Position: -21
Score: 4.3 Sequence: AAAAGTGAGCCGGAGCAAATAA
Locus tag: Shal_2873
|
||||
| Shal_2873 | -21 | 4.3 | AAAAGTGAGCCGGAGCAAATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mmsB | ||||
| Ortholog function: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) | ||||
| Shewanella amazonensis SB2B | Sama_1380 | -67 | 4.1 | AACCGCGACCGCCATCACATTT |
| Shewanella loihica PV-4 | Shew_1672 | -75 | 4.2 | TTATTTGAACATGATCACGCTT |
| Shewanella pealeana ATCC 700345 | Spea_2778 | -138 | 4.5 | AATATTGAGCAAGATCACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2873 | -138 | 4.2 | AATGTTGAGCAAGATCACACTT |
| Shewanella piezotolerans WP3 | swp_3382 | -175 | 4.4 | AATGTTGAGCGAGATCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1478 | -92 | 4.3 | TTAATTGAGCAAGATCACACTT |
|
Position: -138
Score: 4.2 Sequence: AATGTTGAGCAAGATCACACTT
Locus tag: Shal_2878
|
||||
| Shal_2878 | -138 | 4.2 | AATGTTGAGCAAGATCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atoB | ||||
| Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) | ||||
| Shewanella amazonensis SB2B | Sama_1375 | -67 | 4.1 | AACCGCGACCGCCATCACATTT |
| Shewanella loihica PV-4 | Shew_1667 | -75 | 4.2 | TTATTTGAACATGATCACGCTT |
| Shewanella pealeana ATCC 700345 | Spea_2783 | -138 | 4.5 | AATATTGAGCAAGATCACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2878 | -138 | 4.2 | AATGTTGAGCAAGATCACACTT |
| Shewanella piezotolerans WP3 | swp_3387 | -175 | 4.4 | AATGTTGAGCGAGATCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1473 | -92 | 4.3 | TTAATTGAGCAAGATCACACTT |
|
Position: -161
Score: 5.1 Sequence: AAATGTGATCTTCATCGCCTTT
Position: -111
Score: 4.8 Sequence: ATTTTTGATTCAGGTCAAATTT
Locus tag: Shal_2887
|
||||
| Shal_2887 | -161 | 5.1 | AAATGTGATCTTCATCGCCTTT | |
| -111 | 4.8 | ATTTTTGATTCAGGTCAAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W precursor | ||||
| Shewanella oneidensis MR-1 | SO1673 | -161 | 4.4 | TAGCGTGATTTGGATCTCAATG |
| -110 | 4.4 | AATTTTGATTTGGATCAATAAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1392 | -211 | 4.2 | ATAAATGCTGCGTATCACATAA |
| -158 | 4 | TTTCGTGATTAGGATCTCAAGT | ||
| Shewanella sp W3-18-1 | Sputw3181_2709 | -211 | 4.2 | ATAAATGCTGCGTATCACATAA |
| Shewanella sp ANA-3 | Shewana3_2775 | -107 | 3.8 | AATCTTGATTTGGATCAATAAG |
| Shewanella baltica OS155 | Sbal_1490 | -158 | 4 | TTTCGTGATTCAGCTCCCATGT |
| Shewanella denitrificans OS217 | Sden_2589 | -157 | 4.2 | TTTTGTGAATTAGATCAAGACT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1334 | -232 | 3.9 | TCGCTTGATCAACCTCACAAAA |
| -170 | 3.9 | TTTTGTGATCCAAATCAACAGC | ||
| Shewanella amazonensis SB2B | Sama_1371 | -56 | 4 | AATTGTTACGGACGTAACAGAA |
| Shewanella pealeana ATCC 700345 | Spea_2787 | -159 | 4.4 | TATTGTGATCTAGATCCTTTTA |
| Shewanella halifaxensis HAW-EB4 | Shal_2887 | -161 | 5.1 | AAATGTGATCTTCATCGCCTTT |
| -111 | 4.8 | ATTTTTGATTCAGGTCAAATTT | ||
| Shewanella piezotolerans WP3 | swp_3395 | -214 | 4 | TTGCGTGTTGTATGTCACCAAA |
| -161 | 4.4 | AAATGTGATCGCGATCACTGCT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1469 | -158 | 4.5 | TTTTGTGAGCTTGGTCATGTAT |
| -108 | 3.7 | TTAATTGATCTGGATCAATAAG | ||
| Shewanella woodyi ATCC 51908 | Swoo_3207 | -211 | 4.3 | AATTATGACGTCGCTCACTAAA |
| -158 | 4.5 | AAGTGTGAGTTCGATCAAGTAT | ||
| -108 | 3.9 | TTTATTGATTTGGATCAATAAA | ||
|
Position: -284
Score: 3.6 Sequence: TATTTGGCTGAGGATCAAATAT
Locus tag: Shal_2945
|
||||
| Shal_2945 | -284 | 3.6 | TATTTGGCTGAGGATCAAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfB | ||||
| Ortholog function: electron transfer flavoprotein, beta subunit | ||||
| Shewanella denitrificans OS217 | Sden_2539 | -175 | 4.4 | TCATATGATTTTCATCACACTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2748 | -153 | 4.2 | TAGTTTGATTGCCACCACAATA |
| Shewanella pealeana ATCC 700345 | Spea_2855 | -283 | 4.1 | TATTTGGATAAGGATCAAATAT |
| Shewanella piezotolerans WP3 | swp_3472 | -276 | 3.7 | TATTTCAATAAGGATCAAATAT |
| Shewanella woodyi ATCC 51908 | Swoo_3236 | -214 | 4.5 | ATTTGTGAATGTACTCATATAT |
|
Position: -92
Score: 3.7 Sequence: TAATATGAAAAAAAGCACAAAC
Locus tag: Shal_2982
|
||||
| Shal_2982 | -92 | 3.7 | TAATATGAAAAAAAGCACAAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: map | ||||
| Ortholog function: methionine aminopeptidase (EC 3.4.11.18) | ||||
| Shewanella pealeana ATCC 700345 | Spea_2886 | -104 | 4.2 | TAATTTGAAAAAAAGCACAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2982 | -92 | 3.7 | TAATATGAAAAAAAGCACAAAC |
| Shewanella piezotolerans WP3 | swp_3524 | -93 | 4.2 | TATTTTGAAAAAAAGCACAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_3162 | -91 | 3.9 | TATTGAGAGAGCAAACACAAAT |
|
Position: -181
Score: 4.6 Sequence: TTCCTTGATCTAGATCACACTA
Locus tag: Shal_2994
|
||||
| Shal_2994 | -181 | 4.6 | TTCCTTGATCTAGATCACACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1613 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO1613 | -75 | 4 | TTCCTTGATTTAGCTCACACTC |
| Shewanella putrefaciens CN-32 | Sputcn32_1334 | -142 | 4.1 | TTCCTTGATTTAGATCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_2769 | -142 | 4.1 | TTCCTTGATTTAGATCACACTC |
| Shewanella sp ANA-3 | Shewana3_2830 | -136 | 4.1 | TTCCTTGATTTAGATCACACTC |
| Shewanella sp MR-4 | Shewmr4_2656 | -136 | 4.1 | TTCCTTGATTTAGATCACACTC |
| Shewanella sp MR-7 | Shewmr7_2723 | -136 | 4.1 | TTCCTTGATTTAGATCACACTC |
| Shewanella baltica OS155 | Sbal_1436 | -138 | 4.1 | TTCCTTGACTTAGCTCACACTT |
| Shewanella amazonensis SB2B | Sama_1125 | -126 | 4.5 | TTCCTTGATCCAGATCACACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2994 | -181 | 4.6 | TTCCTTGATCTAGATCACACTA |
| Shewanella piezotolerans WP3 | swp_3538 | -271 | 4.4 | TTCCTTGATCGAGATCACACAA |
|
Position: -265
Score: 4.2 Sequence: ATGTTTGAGCTAGATCACTCTT
Locus tag: Shal_3007
|
||||
| Shal_3007 | -265 | 4.2 | ATGTTTGAGCTAGATCACTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1603 | ||||
| Ortholog function: putative transcriptional regulator, inferred for PFA pathway | ||||
| Shewanella pealeana ATCC 700345 | Spea_2906 | -269 | 3.9 | AAGCAAGATTTAGATCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3007 | -265 | 4.2 | ATGTTTGAGCTAGATCACTCTT |
| Shewanella piezotolerans WP3 | swp_3549 | -268 | 4.5 | ATATTAGATCTAAATCACACTT |
| -238 | 3.9 | TAACGTTAGTTACCACACAAAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_3201 | -267 | 4.6 | TTATTTGACCTGGATCACGCTT |
| Shewanella woodyi ATCC 51908 | Swoo_1424 | -228 | 4 | AAATGAAACATCTATCACACAT |
|
Position: -193
Score: 5.2 Sequence: ATTTGTGACGTTGATCACCTAT
Locus tag: Shal_3021
|
||||
| Shal_3021 | -193 | 5.2 | ATTTGTGACGTTGATCACCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1482 | ||||
| Ortholog function: tonB-dependent receptor, putative | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_2440 | -90 | 4 | TTTTTTGCCACATATAACAAAA |
| Shewanella pealeana ATCC 700345 | Spea_2930 | -193 | 5.2 | TTTTGTGATCTTCGTCACCTAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3021 | -193 | 5.2 | ATTTGTGACGTTGATCACCTAT |
| Shewanella piezotolerans WP3 | swp_3568 | -184 | 4.4 | AACTGTGATCTCTATCACCGAC |
|
Position: -114
Score: 4.4 Sequence: AATAGTGAGCAATCTCACGTTT
Locus tag: Shal_3068
|
||||
| Shal_3068 | -114 | 4.4 | AATAGTGAGCAATCTCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1539 | ||||
| Ortholog function: Probable acylaminoacyl-peptidase (EC 3.4.19.1) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1287 | -127 | 4.5 | AATAGTGAGCGATATCACGATT |
| Shewanella sp W3-18-1 | Sputw3181_2819 | -127 | 4.5 | AATAGTGAGCGATATCACGATT |
| Shewanella sp ANA-3 | Shewana3_2889 | -127 | 4.5 | AATAGTGAGCAATATCACGATT |
| Shewanella sp MR-4 | Shewmr4_2719 | -127 | 4.5 | AATAGTGAGCAATATCACGATT |
| Shewanella sp MR-7 | Shewmr7_2790 | -127 | 4.5 | AATAGTGAGCAATATCACGATT |
| Shewanella baltica OS155 | Sbal_1369 | -128 | 4.5 | AATAGTGAGCAATATCACGATT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2778 | -313 | 4.7 | AATAGTGAGTATTATCACATTA |
| Shewanella amazonensis SB2B | Sama_2422 | -183 | 4.7 | TTATGTGATTTATGTCTCGATT |
| Shewanella loihica PV-4 | Shew_2759 | -171 | 4.4 | AATAGTGAGCAATCTCACGTTT |
| Shewanella pealeana ATCC 700345 | Spea_2979 | -113 | 4.3 | AAGAGTGAGCGATCTCACGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3068 | -114 | 4.4 | AATAGTGAGCAATCTCACGTTT |
| Shewanella piezotolerans WP3 | swp_3605 | -144 | 4.2 | AAAGGTGAGCAATCTCACGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_3317 | -103 | 4.8 | AATAGTGAGCAATCTCACATTT |
| Shewanella woodyi ATCC 51908 | Swoo_3465 | -159 | 4.4 | AATAGTGAGCAGTCTCACGTTT |
|
Position: -149
Score: 4.4 Sequence: AAACGTGAGATTGCTCACTATT
Locus tag: Shal_3069
|
||||
| Shal_3069 | -149 | 4.4 | AAACGTGAGATTGCTCACTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: icd | ||||
| Ortholog function: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) | ||||
| Shewanella oneidensis MR-1 | SO1538 | -149 | 4.7 | ATTCGTGATATTGCTCACTATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1286 | -148 | 4.7 | AATCGTGATATCGCTCACTATT |
| Shewanella sp W3-18-1 | Sputw3181_2820 | -148 | 4.7 | AATCGTGATATCGCTCACTATT |
| Shewanella sp ANA-3 | Shewana3_2890 | -149 | 4.7 | AATCGTGATATTGCTCACTATT |
| Shewanella sp MR-4 | Shewmr4_2720 | -149 | 4.7 | AATCGTGATATTGCTCACTATT |
| Shewanella sp MR-7 | Shewmr7_2791 | -149 | 4.7 | AATCGTGATATTGCTCACTATT |
| Shewanella baltica OS155 | Sbal_1368 | -149 | 4.7 | AATCGTGATATTGCTCACTATT |
| Shewanella denitrificans OS217 | Sden_2561 | -143 | 3.8 | AAAAGGGATATTTCTCACTAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2779 | -148 | 4.7 | TAATGTGATAATACTCACTATT |
| Shewanella amazonensis SB2B | Sama_2423 | -89 | 4.5 | AATCGAGACATAAATCACATAA |
| Shewanella loihica PV-4 | Shew_2760 | -150 | 4.4 | AAACGTGAGATTGCTCACTATT |
| Shewanella pealeana ATCC 700345 | Spea_2980 | -146 | 4.2 | AAACGTGAGATCGCTCACTCTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3069 | -149 | 4.4 | AAACGTGAGATTGCTCACTATT |
| Shewanella piezotolerans WP3 | swp_3606 | -293 | 4.6 | AAACGTGAGATTGCTCACCTTT |
| Shewanella sediminis HAW-EB3 | Ssed_3318 | -151 | 4.7 | AAATGTGAGATTGCTCACTATT |
| Shewanella woodyi ATCC 51908 | Swoo_3466 | -148 | 4.3 | AAACGTGAGACTGCTCACTATT |
|
Position: -300
Score: 4.5 Sequence: TTACGTGACACGGATCACAGAG
Position: -265
Score: 4.5 Sequence: AACTGTGATCAGTCTCACTAAT
Locus tag: Shal_3083
|
||||
| Shal_3083 | -300 | 4.5 | TTACGTGACACGGATCACAGAG | |
| -265 | 4.5 | AACTGTGATCAGTCTCACTAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lldP | ||||
| Ortholog function: L-lactate permease | ||||
| Shewanella oneidensis MR-1 | SO1522 | -262 | 4.6 | TTAAGTGACACCGATCACAGTT |
| -180 | 4.2 | CAAAATGATCTAGATCATATAA | ||
| Shewanella sp MR-4 | Shewmr4_2734 | -263 | 4.1 | TCGAGTGACATAGATCACAGTT |
| -181 | 4.2 | CAAAATGATCTAGATCATATTA | ||
| Shewanella sp MR-7 | Shewmr7_2807 | -263 | 4.1 | TCGAGTGACATAGATCACAGTT |
| -181 | 4.2 | CAAAATGATCTAGATCATATTA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2793 | -298 | 4.3 | TCTAGTGAGCCCCTTCACATTA |
| -197 | 3.7 | AAACGTGACCTCAAACACGCAC | ||
| Shewanella pealeana ATCC 700345 | Spea_2994 | -276 | 4 | TTAGGTGACACAGGTCACACCA |
| -241 | 4.1 | AACCGTGACAGATCTCACAATC | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3083 | -300 | 4.5 | TTACGTGACACGGATCACAGAG |
| -265 | 4.5 | AACTGTGATCAGTCTCACTAAT | ||
|
Position: -183
Score: 4.5 Sequence: AACTGTGAATTGCTTCACAAAC
Locus tag: Shal_3127
|
||||
| Shal_3127 | -183 | 4.5 | AACTGTGAATTGCTTCACAAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: psrA | ||||
| Ortholog function: polysulfide reductase, subunit A | ||||
| Shewanella sp ANA-3 | Shewana3_3619 | -278 | 3.8 | TCTATTGATCCTATTCACGAAT |
| Shewanella sp MR-4 | Shewmr4_3444 | -273 | 4 | CTTATTGATCTTATTCACGATT |
| Shewanella sp MR-7 | Shewmr7_0507 | -273 | 4 | CTTATTGATCTTATTCACGATT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1999 | -181 | 3.8 | AACCGTGACATCAATCAAATCA |
| Shewanella pealeana ATCC 700345 | Spea_3039 | -182 | 4.4 | AACTGTGAATTGCCTCACAAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_3127 | -183 | 4.5 | AACTGTGAATTGCTTCACAAAC |
| Shewanella piezotolerans WP3 | swp_1238 | -191 | 4.4 | AACTGTGAAACAACTCACAAAG |
| Shewanella sediminis HAW-EB3 | Ssed_4047 | -228 | 3.9 | ACATTAGATAAATATCACATTT |
|
Position: -138
Score: 4.8 Sequence: AAGTGTGATCTAAATCTAATTA
Locus tag: Shal_3135
|
||||
| Shal_3135 | -138 | 4.8 | AAGTGTGATCTAAATCTAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deoA | ||||
| Ortholog function: thymidine phosphorylase (EC 2.4.2.4) | ||||
| Shewanella oneidensis MR-1 | SO1218 | -135 | 3.9 | AAGTGTGACCTAAATCTAGTTG |
| Shewanella putrefaciens CN-32 | Sputcn32_2821 | -136 | 3.7 | AAGTGTGACCTAAATCTATTTG |
| Shewanella sp W3-18-1 | Sputw3181_1190 | -136 | 3.7 | AAGTGTGACCTAAATCTATTTG |
| Shewanella sp ANA-3 | Shewana3_1042 | -135 | 3.9 | AAGTGTGACCTAAATCTAGTTG |
| Shewanella sp MR-4 | Shewmr4_1038 | -135 | 3.9 | AAGTGTGACCTAAATCTAGTTG |
| Shewanella sp MR-7 | Shewmr7_1103 | -135 | 3.9 | AAGTGTGACCTAAATCTAGTTG |
| Shewanella baltica OS155 | Sbal_3226 | -136 | 3.7 | AAGTGTGACCTAAATCTATTTG |
| Shewanella amazonensis SB2B | Sama_0974 | -135 | 3.9 | ATTTGTGATCCGCGTCGAAACG |
| Shewanella loihica PV-4 | Shew_2814 | -133 | 4 | AAGTGTGATCTAAATCTATTTG |
| Shewanella pealeana ATCC 700345 | Spea_3047 | -138 | 4.8 | AAGTGTGATCTAAATCTAATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3135 | -138 | 4.8 | AAGTGTGATCTAAATCTAATTA |
| Shewanella piezotolerans WP3 | swp_1230 | -139 | 4.8 | AAGTGTGATCTAAATCTAATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3377 | -134 | 4 | AAGTGTGATCTAAATCTATTTG |
| Shewanella woodyi ATCC 51908 | Swoo_3548 | -157 | 4.2 | AAGTGTGATCTAAATCTAGTTG |
|
Position: -268
Score: 4.5 Sequence: TTCCGTGATCAATATCACCTTA
Locus tag: Shal_3174
|
||||
| Shal_3174 | -268 | 4.5 | TTCCGTGATCAATATCACCTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Spea_3089 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0956 | -213 | 4.6 | TTATGTGAAGCAGATCGCCATT |
| Shewanella sp W3-18-1 | Sputw3181_3220 | -213 | 4.6 | TTATGTGAAGCAGATCGCCATT |
| Shewanella baltica OS155 | Sbal_0942 | -213 | 4.6 | TTATGTGAAGCAGATCGCCATT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0964 | -141 | 4.5 | TTTTGTGAATTAAAGCAAATAA |
| Shewanella pealeana ATCC 700345 | Spea_3089 | -256 | 4.3 | TTTTGCGATTCAGATCACTTTG |
| Shewanella halifaxensis HAW-EB4 | Shal_3174 | -268 | 4.5 | TTCCGTGATCAATATCACCTTA |
| -40 | 3.7 | ATTTGAGATTCTATTTACAACT | ||
| Shewanella sediminis HAW-EB3 | Ssed_3418 | -227 | 3.8 | TTTTGTACTGTTTTTAAAATAA |
| Shewanella sediminis HAW-EB3 | Ssed_3419 | -227 | 3.9 | ATTTCAGATATAAATCAAAAAA |
|
Position: -127
Score: 3.7 Sequence: CAGCGTGATTACAGTCGCACTT
Locus tag: Shal_3187
|
||||
| Shal_3187 | -127 | 3.7 | CAGCGTGATTACAGTCGCACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nqrA-2 | ||||
| Ortholog function: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) | ||||
| Shewanella oneidensis MR-1 | SO1103 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0940 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sp W3-18-1 | Sputw3181_3236 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sp ANA-3 | Shewana3_0938 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sp MR-4 | Shewmr4_0936 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sp MR-7 | Shewmr7_0974 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella baltica OS155 | Sbal_0924 | -128 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella denitrificans OS217 | Sden_0982 | -128 | 4.3 | CAGCGTGATTGCGATCGCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0949 | -127 | 4.3 | CAGCGTGATTATGATCGCATTT |
| Shewanella amazonensis SB2B | Sama_2539 | -127 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella loihica PV-4 | Shew_2881 | -131 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| -73 | 4.1 | ATGTTTGAAATCTATCTCATTT | ||
| Shewanella pealeana ATCC 700345 | Spea_3103 | -133 | 4.4 | CAGCGTGATTCTGATCGCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3187 | -127 | 3.7 | CAGCGTGATTACAGTCGCACTT |
| Shewanella piezotolerans WP3 | swp_1167 | -132 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_3431 | -130 | 4.1 | CAGCGTGATTGCGGTCGCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_3617 | -46 | 4 | CAGCGTGATTGCGGTCGCAAAT |
|
Position: -76
Score: 5.2 Sequence: AAATGTGATCCGTATTACATTT
Locus tag: Shal_3240
|
||||
| Shal_3240 | -76 | 5.2 | AAATGTGATCCGTATTACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lipB | ||||
| Ortholog function: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase | ||||
| Shewanella oneidensis MR-1 | SO1162 | -68 | 5.1 | AAGTGTGATCTATCTTACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2875 | -69 | 5.3 | AAATGTGATCTATCTTACATTT |
| Shewanella sp W3-18-1 | Sputw3181_1028 | -75 | 5.3 | AAATGTGATCTATCTTACATTT |
| Shewanella sp ANA-3 | Shewana3_0989 | -74 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella sp MR-4 | Shewmr4_0985 | -74 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella sp MR-7 | Shewmr7_1050 | -74 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella baltica OS155 | Sbal_3281 | -74 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella loihica PV-4 | Shew_2941 | -70 | 5.3 | AAATGTGATCTACCTTACATTT |
| Shewanella pealeana ATCC 700345 | Spea_3155 | -76 | 5.2 | AAATGTGATCCGTATTACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3240 | -76 | 5.2 | AAATGTGATCCGTATTACATTT |
| Shewanella piezotolerans WP3 | swp_3928 | -69 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_3491 | -75 | 5.3 | AAATGTGATCTAGCTTACATTT |
| Shewanella woodyi ATCC 51908 | Swoo_3714 | -74 | 5.1 | AAGTGTGATCTAGCTTACAATT |
|
Position: -216
Score: 4.5 Sequence: TTAAGTGATTTGTATCGCCATA
Position: -119
Score: 4.8 Sequence: AATAGTGAGGTGGGTCACAAAT
Locus tag: Shal_3336
|
||||
| Shal_3336 | -216 | 4.5 | TTAAGTGATTTGTATCGCCATA | |
| -119 | 4.8 | AATAGTGAGGTGGGTCACAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Shew_1222 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella loihica PV-4 | Shew_1222 | -66 | 5 | TAGTGTGATGCAGCTCTCAATA |
| Shewanella pealeana ATCC 700345 | Spea_3260 | -217 | 3.7 | TTCAGTGATTTATATCGCCACT |
| -121 | 4.4 | AAAGGTGAGCTCGATCACAAAC | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3336 | -216 | 4.5 | TTAAGTGATTTGTATCGCCATA |
| -119 | 4.8 | AATAGTGAGGTGGGTCACAAAT | ||
| Shewanella piezotolerans WP3 | swp_1085 | -105 | 4.5 | AAAGGTGAACTAGATCACAAAG |
| Shewanella sediminis HAW-EB3 | Ssed_1323 | -145 | 5.1 | AAAGGTGATCGATATCACATAT |
| Shewanella woodyi ATCC 51908 | Swoo_3332 | -69 | 4 | GAAGGTGATTAATATCACGTTA |
|
Position: -90
Score: 4.8 Sequence: AATTGTGACTGAGATCAAATTC
Locus tag: Shal_3428
|
||||
| Shal_3428 | -90 | 4.8 | AATTGTGACTGAGATCAAATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3682 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3682 | -109 | 3.8 | TTGCGTGATTTTGTGCAAGCAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2981 | -76 | 3.8 | ATTTTTGAGCAAGATCACGGCT |
| Shewanella sp W3-18-1 | Sputw3181_0966 | -76 | 3.8 | ATTTTTGAGCAAGATCACGGCT |
| Shewanella sp MR-4 | Shewmr4_0873 | -166 | 3.7 | TGACGTGATTTGTGGCGTATAA |
| Shewanella sp MR-7 | Shewmr7_3149 | -166 | 3.7 | TGACGTGATTTGTGGCGTATAA |
| Shewanella baltica OS155 | Sbal_3331 | -76 | 3.7 | ATTTTTGAGCAATATCACGGCT |
| Shewanella amazonensis SB2B | Sama_2854 | -78 | 4 | AAACTTGATCTGGATCACGAGT |
| Shewanella loihica PV-4 | Shew_3102 | -84 | 4.2 | AAATGTGATCTGGATCAAGTGG |
| Shewanella pealeana ATCC 700345 | Spea_3356 | -102 | 4.7 | AATTGTGAGCTAGATCAAACTC |
| Shewanella halifaxensis HAW-EB4 | Shal_3428 | -90 | 4.8 | AATTGTGACTGAGATCAAATTC |
| Shewanella piezotolerans WP3 | swp_1054 | -79 | 4.3 | TTTTGTGAGCAAGATCAACTTC |
| Shewanella sediminis HAW-EB3 | Ssed_3715 | -111 | 4.2 | CAGTGTGATCTCGATCAACTTC |
|
Position: -113
Score: 4.4 Sequence: GAATTTGATCTCAGTCACAATT
Locus tag: Shal_3429
|
||||
| Shal_3429 | -113 | 4.4 | GAATTTGATCTCAGTCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3683 | ||||
| Ortholog function: aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2982 | -168 | 4.3 | AGCCGTGATCTTGCTCAAAAAT |
| Shewanella sp W3-18-1 | Sputw3181_0965 | -168 | 4.3 | AGCCGTGATCTTGCTCAAAAAT |
| Shewanella baltica OS155 | Sbal_3332 | -189 | 4.2 | AGCCGTGATATTGCTCAAAAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0937 | -146 | 3.9 | CTTAGTGATCAAAATCAAATCA |
| Shewanella amazonensis SB2B | Sama_2855 | -106 | 4.4 | ACTCGTGATCCAGATCAAGTTT |
| Shewanella loihica PV-4 | Shew_3103 | -201 | 4.2 | CCACTTGATCCAGATCACATTT |
| Shewanella pealeana ATCC 700345 | Spea_3357 | -113 | 4.6 | GAGTTTGATCTAGCTCACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_3429 | -113 | 4.4 | GAATTTGATCTCAGTCACAATT |
| Shewanella piezotolerans WP3 | swp_1052 | -113 | 4 | GAAGTTGATCTTGCTCACAAAA |
|
Position: -250
Score: 4.7 Sequence: TAATGTGCTATCGGTCACAGAA
Locus tag: Shal_3518
|
||||
| Shal_3518 | -250 | 4.7 | TAATGTGCTATCGGTCACAGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0939 | ||||
| Ortholog function: split-soret diheme cytochrome c | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3633 | -325 | 4.5 | ATTTGTGAGCGATATCACGTCA |
| -147 | 4.4 | TTATCTGCTTTGAATCACATTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3518 | -328 | 4.2 | AAATGAGAGGTTAATCACACAG |
| -250 | 4.7 | TAATGTGCTATCGGTCACAGAA | ||
|
Position: -227
Score: 4.6 Sequence: TTCTGTGACCGATAGCACATTA
Position: -149
Score: 4.4 Sequence: CTGTGTGATTAACCTCTCATTT
Position: 18
Score: 3.8 Sequence: AAATTTGATATTGATAAAGAAG
Locus tag: Shal_3519
|
||||
| Shal_3519 | -227 | 4.6 | TTCTGTGACCGATAGCACATTA | |
| -149 | 4.4 | CTGTGTGATTAACCTCTCATTT | ||
| 18 | 3.8 | AAATTTGATATTGATAAAGAAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cadC | ||||
| Ortholog function: transcriptional regulator-related protein | ||||
| Shewanella oneidensis MR-1 | SO0940 | -246 | 4.3 | TAATGTGAGCGAAGGCACGATA |
| Shewanella sp MR-4 | Shewmr4_0783 | -246 | 3.8 | CAATGTGCATCAACGCACATTA |
| Shewanella sp MR-7 | Shewmr7_3240 | -246 | 3.8 | CAATGTGTGCCTGCGCACATTA |
| Shewanella baltica OS155 | Sbal_0833 | -75 | 4 | TTGGGTTAGCAAGATCACATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3632 | -334 | 4.6 | AAATGTGATTCAAAGCAGATAA |
| -234 | 4.3 | TTTCATGATGTAAGTCTCATTA | ||
| -156 | 5 | TGACGTGATATCGCTCACAAAT | ||
| Shewanella loihica PV-4 | Shew_0760 | -234 | 3.9 | CGATGTGAAGCTGATCACTCTA |
| Shewanella pealeana ATCC 700345 | Spea_3438 | -227 | 4.2 | TTTCATGAACGATGTCACATTA |
| -149 | 3.8 | GAGTGTGACTAACGTCTCATTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3519 | -227 | 4.6 | TTCTGTGACCGATAGCACATTA |
| -149 | 4.4 | CTGTGTGATTAACCTCTCATTT | ||
| Shewanella piezotolerans WP3 | swp_4010 | -258 | 4.3 | TTTATTGATCTAGATCTAATAA |
| Shewanella sediminis HAW-EB3 | Ssed_0883 | -147 | 4.7 | CAGTGTGATTTTGTTCGCAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_0885 | -232 | 4.2 | AATGGTGAGCTGGATCATGTTA |
| -145 | 4.5 | CAATGTGATCCTCTTCGCAAAC | ||
|
Position: -139
Score: 4 Sequence: TTTTGTGAGGTAGGTAAAGCTA
Locus tag: Shal_3525
|
||||
| Shal_3525 | -139 | 4 | TTTTGTGAGGTAGGTAAAGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemG | ||||
| Ortholog function: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_3038 | -207 | 4.5 | TTTTGTGAGCAAGCTAAAATTA |
| -135 | 3.9 | AATTGATATTTAAATCACCTAG | ||
| Shewanella sp W3-18-1 | Sputw3181_0907 | -207 | 4.5 | TTTTGTGAGCAAGCTAAAATTA |
| -135 | 3.9 | AATTGATATTTAAATCACCTAG | ||
| Shewanella sp ANA-3 | Shewana3_0871 | -317 | 4.1 | TTTTGTGAGCAAGCTAGAATTA |
| Shewanella sp MR-4 | Shewmr4_3066 | -320 | 4.1 | TTTTGTGAGCAAGCTAGAATTA |
| Shewanella sp MR-7 | Shewmr7_0906 | -318 | 4.1 | TTTTGTGAGCAAGCTAGAATTA |
| Shewanella baltica OS155 | Sbal_3400 | -316 | 4.4 | TTTTGTGAGACAGTTAAAACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0813 | -144 | 4 | TTTTGCGCGGCAGTTCACATTG |
| -83 | 4.4 | TGACGTGATCTGTTTCATGTAA | ||
| Shewanella amazonensis SB2B | Sama_2882 | -130 | 3.9 | AAATGTGAGGCAGTTGGAATTT |
| Shewanella loihica PV-4 | Shew_0678 | -126 | 4.1 | ATTTGTGACATCGGTAAACTTA |
| Shewanella pealeana ATCC 700345 | Spea_0673 | -140 | 4 | TTTTGTGAGGTAGGTAAAGCTA |
| -98 | 3.8 | CCTCGTGATCTGTTTCATGTAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3525 | -139 | 4 | TTTTGTGAGGTAGGTAAAGCTA |
| -97 | 3.8 | CCTCGTGATCTGTTTCATGTAA | ||
| Shewanella piezotolerans WP3 | swp_4046 | -124 | 3.9 | TTTTGTGAGGTAGGTAAAGGTA |
| -77 | 3.7 | TGATCTGATTCAATTAAAAATA | ||
| Shewanella sediminis HAW-EB3 | Ssed_3790 | -120 | 4.9 | ATTTGTGATGCAGGTAAAATTT |
| -78 | 4 | TGCCGTGATCTGTTTCATGTAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0793 | -123 | 4.3 | AATTGTGATATAGGTAAGAGTA |
|
Position: -147
Score: 3.9 Sequence: AAATATGAGCTTGTTCCAAATT
Locus tag: Shal_3535
|
||||
| Shal_3535 | -147 | 3.9 | AAATATGAGCTTGTTCCAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: swp_4060 | ||||
| Ortholog function: phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A | ||||
| Shewanella sp ANA-3 | Shewana3_0861 | -204 | 4 | AAACTTGCATCAGCTCACATAA |
| Shewanella sp MR-4 | Shewmr4_3074 | -203 | 3.9 | AAACTTGCGTCACCTCACATAA |
| Shewanella sp MR-7 | Shewmr7_0898 | -204 | 4 | AAACTTGCATCAGCTCACATAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3189 | -251 | 4.5 | ATATTTGACCATGTTCAAATAT |
| Shewanella loihica PV-4 | Shew_0671 | -217 | 4 | AATAGTGATGAGGTTAATATAG |
| Shewanella pealeana ATCC 700345 | Spea_0661 | -283 | 4.1 | TTATGTGCCATGCAACACATTG |
| Shewanella halifaxensis HAW-EB4 | Shal_3535 | -147 | 3.9 | AAATATGAGCTTGTTCCAAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_2004 | -157 | 4.3 | TAATGTGATTTTCAGAATAATT |
| Shewanella piezotolerans WP3 | swp_4060 | -318 | 4.3 | TGAGGTGATGCATATCATAAAA |
|
Position: -214
Score: 4.9 Sequence: TTTTGTGAGTCCGATAACATTT
Locus tag: Shal_3589
|
||||
| Shal_3589 | -214 | 4.9 | TTTTGTGAGTCCGATAACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydD | ||||
| Ortholog function: Transport ATP-binding protein CydD | ||||
| Shewanella oneidensis MR-1 | SO3780 | -191 | 4.4 | TTTATTGATCAGCATCGCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3106 | -169 | 4.7 | TTTTGTGAATCGGTTAACAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0838 | -169 | 4.7 | TTTTGTGAATCGGTTAACAAAA |
| Shewanella sp ANA-3 | Shewana3_0812 | -187 | 4.4 | TTTATTGATCTTTATCTCATTT |
| -167 | 4.5 | TTTTGTGAATAGGCTAACAAAA | ||
| Shewanella sp MR-4 | Shewmr4_3127 | -187 | 4.4 | TTTATTGATCTTTATCTCATTT |
| -167 | 4.5 | TTTTGTGAATAGGCTAACAAAA | ||
| Shewanella sp MR-7 | Shewmr7_0840 | -187 | 4.4 | TTTATTGATCTTTATCTCATTT |
| -167 | 4.5 | TTTTGTGAATAGGCTAACAAAA | ||
| Shewanella baltica OS155 | Sbal_3463 | -170 | 4.3 | TTTTGTGAGTCTGCTAGCAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3213 | -214 | 4.2 | TATTGTGTTGCAATTAACAATG |
| -104 | 5 | AAATGTGAATCAGATAACATTT | ||
| Shewanella amazonensis SB2B | Sama_2679 | -137 | 4.2 | TTTTTTGATCCAGCGCAAATTC |
| -118 | 4.2 | TTCTGTGAATCCCCTAACAAAT | ||
| Shewanella loihica PV-4 | Shew_0613 | -129 | 4.5 | TTTTTTGATCTAGCTCAATTTT |
| -110 | 4.8 | TTTTGTGAGCCTAATAACAATT | ||
| Shewanella pealeana ATCC 700345 | Spea_3494 | -185 | 4.1 | TTTATTGATCTAGCTCAATTTT |
| -166 | 4.4 | TTTTGTGAGTCCGATAGCAAAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3589 | -233 | 4.1 | TTTATTGATCTAGCTCAATTTT |
| -214 | 4.9 | TTTTGTGAGTCCGATAACATTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_3849 | -139 | 4.1 | AAAATTGATCTAGCTCAATTTT |
| -120 | 4.7 | TTTTGTGAATCCGTTAACAATT | ||
| Shewanella woodyi ATCC 51908 | Swoo_0710 | -149 | 4.1 | TTTATTGATCTAGCTCAATTTT |
| -130 | 4.7 | TTTTGTGAATCTCTTAACATTT | ||
|
Position: -319
Score: 3.4 Sequence: TTGTTTTACATCGATAATATTT
Position: -226
Score: 3.5 Sequence: AGATGTGATACAAGCCTAATTG
Locus tag: Shal_3603
|
||||
| Shal_3603 | -319 | 3.4 | TTGTTTTACATCGATAATATTT | |
| -226 | 3.5 | AGATGTGATACAAGCCTAATTG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crp | ||||
| Ortholog function: Cyclic AMP receptor protein Crp | ||||
| Shewanella oneidensis MR-1 | SO0624 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0652 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp W3-18-1 | Sputw3181_3522 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp ANA-3 | Shewana3_0617 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp MR-4 | Shewmr4_0618 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp MR-7 | Shewmr7_3412 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella baltica OS155 | Sbal_0578 | -174 | 3.7 | TTAGTTGACTTAAATCACTAAA |
| Shewanella denitrificans OS217 | Sden_3190 | -94 | 3.6 | AAACACGATCTTGGTCAAAGTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3292 | -97 | 4 | AAATACGATCTCTATCAAAGTT |
| Shewanella amazonensis SB2B | Sama_3004 | -96 | 3.8 | AATTTCGATCTGCATCATGGTT |
| Shewanella loihica PV-4 | Shew_0585 | -238 | 4 | AGATGTGATATGGGCAACATTG |
| Shewanella pealeana ATCC 700345 | Spea_3509 | -225 | 3.6 | AGATGTGATATAAGCCTAATTG |
| Shewanella halifaxensis HAW-EB4 | Shal_3603 | -226 | 3.5 | AGATGTGATACAAGCCTAATTG |
| Shewanella piezotolerans WP3 | swp_0755 | -309 | 4.2 | TTTATTGATAAGGTTCAAAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_3873 | -173 | 3.8 | TTAGTTGACTTATATCACTAAT |
| Shewanella woodyi ATCC 51908 | Swoo_0662 | -173 | 3.8 | TTAGTTGACTTATATCACTAAT |
|
Position: -138
Score: 3.7 Sequence: AACTGGCATTCTGATCACATTT
Locus tag: Shal_3610
|
||||
| Shal_3610 | -138 | 3.7 | AACTGGCATTCTGATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astC | ||||
| Ortholog function: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) | ||||
| Shewanella oneidensis MR-1 | SO0617 | -142 | 4 | AACTGGTATTTTGATCACAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_0645 | -142 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_3529 | -142 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella sp ANA-3 | Shewana3_0610 | -142 | 4 | AACTGGTATTTTGATCACAATT |
| Shewanella sp MR-4 | Shewmr4_0611 | -142 | 4 | AACTGGTATTTTGATCACAATT |
| Shewanella sp MR-7 | Shewmr7_3419 | -308 | 3.8 | AATTGTGTAGTTATTCATATTC |
| Shewanella baltica OS155 | Sbal_0571 | -142 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella denitrificans OS217 | Sden_3193 | -136 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3299 | -137 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella amazonensis SB2B | Sama_3011 | -142 | 4 | AACTGGTATTTCGATCACAATT |
| Shewanella loihica PV-4 | Shew_0578 | -140 | 3.8 | AACTGGTATTTTGATCACGTTT |
| Shewanella pealeana ATCC 700345 | Spea_3516 | -138 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3610 | -138 | 3.7 | AACTGGCATTCTGATCACATTT |
| Shewanella piezotolerans WP3 | swp_0747 | -140 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0809 | -141 | 4.1 | AACTGGTATTTTGATCACATTT |
| -121 | 3.9 | TTTCGTTATTAATGTCACTTAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0655 | -172 | 4.3 | ATATGTGCTGCTGATCTTATTT |
|
Position: -128
Score: 4.6 Sequence: AACTATGATCTGGCTCAAATTT
Locus tag: Shal_3630
|
||||
| Shal_3630 | -128 | 4.6 | AACTATGATCTGGCTCAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: petA | ||||
| Ortholog function: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) | ||||
| Shewanella oneidensis MR-1 | SO0608 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3276 | -130 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -101 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp W3-18-1 | Sputw3181_0665 | -130 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -101 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp ANA-3 | Shewana3_0601 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp MR-4 | Shewmr4_0602 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp MR-7 | Shewmr7_3428 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella baltica OS155 | Sbal_0562 | -131 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -102 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3307 | -129 | 3.8 | CACTATGATCTGGTTCTAATTT |
| Shewanella loihica PV-4 | Shew_0570 | -130 | 4.1 | TACTATGATCTGCTTCTAATTT |
| -101 | 3.9 | TAATGAGCCCCGCCTCAAATTT | ||
| Shewanella pealeana ATCC 700345 | Spea_3536 | -78 | 4.2 | AACTATGATCTGGTTCTAATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3630 | -128 | 4.6 | AACTATGATCTGGCTCAAATTT |
| Shewanella piezotolerans WP3 | swp_0793 | -131 | 4.2 | AACTATGATCTGGTTCTAATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0801 | -132 | 4.4 | TACTATGATCAAGCTCAAATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4166 | -129 | 3.8 | TACTATGATCTGCTTCTGATTT |
|
Position: -104
Score: 4.3 Sequence: AAGTTTGACAGTGTTCAAATAT
Locus tag: Shal_3640
|
||||
| Shal_3640 | -104 | 4.3 | AAGTTTGACAGTGTTCAAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sden_3210 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella denitrificans OS217 | Sden_3210 | -122 | 4.3 | AAGCGTGAACAGCATCACGTAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3316 | -160 | 4.3 | ATAAGTGATCTAGTACTCACTT |
| -99 | 4.2 | AAACATGATCTGGTTCAAATCA | ||
| Shewanella amazonensis SB2B | Sama_3031 | -165 | 3.9 | TAGAGTGATCCTCTGCAAAGAA |
| -104 | 4.8 | AATTATGATGCAATTCAAATAA | ||
| Shewanella loihica PV-4 | Shew_0560 | -99 | 4.1 | AACTATGACATTGTTCAAAAAA |
| Shewanella pealeana ATCC 700345 | Spea_3546 | -105 | 4.3 | AAGTTTGACTGCGTTCAAATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_3640 | -165 | 3.8 | TTACGTGATCGAGCGCTAGTTT |
| -104 | 4.3 | AAGTTTGACAGTGTTCAAATAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0791 | -164 | 3.8 | AAGTGTGATCTGACGCCGATTT |
| -103 | 3.9 | AACTTTGAACTTGTTCAAGTAT | ||
| Shewanella woodyi ATCC 51908 | Swoo_4177 | -44 | 4.5 | AAGTTTGAGCTTGTTCAAATAT |
|
Position: -102
Score: 4.3 Sequence: AAATGCGACCTAATTCAAGTAA
Locus tag: Shal_3720
|
||||
| Shal_3720 | -102 | 4.3 | AAATGCGACCTAATTCAAGTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: modE | ||||
| Ortholog function: molybdate-binding domain of ModE | ||||
| Shewanella pealeana ATCC 700345 | Spea_3636 | -143 | 4.4 | AAACATGATCCAGTTCACAACA |
| -102 | 4 | AAATGTGACTCAACCCAAGATA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3720 | -102 | 4.3 | AAATGCGACCTAATTCAAGTAA |
| Shewanella piezotolerans WP3 | swp_0644 | -105 | 4.1 | TTCTGCGACTTACTTCAAATAA |
|
Position: -144
Score: 4.2 Sequence: AAATGTGGCGAAAATCACGTTA
Locus tag: Shal_3735
|
||||
| Shal_3735 | -144 | 4.2 | AAATGTGGCGAAAATCACGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: scrA | ||||
| Ortholog function: aminotransferase class V | ||||
| Shewanella pealeana ATCC 700345 | Spea_3648 | -143 | 4.2 | AAGTGTGGTGATAATCACGTTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3735 | -144 | 4.2 | AAATGTGGCGAAAATCACGTTA |
| Shewanella woodyi ATCC 51908 | Swoo_4279 | -154 | 4.2 | AACTGTGTTATTCATCACGATT |
|
Position: -101
Score: 4.3 Sequence: AAGTGTGATCTTGGCTACAAAT
Locus tag: Shal_3744
|
||||
| Shal_3744 | -101 | 4.3 | AAGTGTGATCTTGGCTACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Spea_3654 | ||||
| Ortholog function: histidinol-phosphate aminotransferase (EC 2.6.1.9) | ||||
| Shewanella pealeana ATCC 700345 | Spea_3654 | -101 | 4.9 | ATTTGTGATCTTGATTGCAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3744 | -101 | 4.3 | AAGTGTGATCTTGGCTACAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_4751 | -98 | 4.2 | TTATGTGAACAACAGCTCAAAA |
|
Position: -156
Score: 4.9 Sequence: AAGCGTGATCTGGTTCACGAAT
Locus tag: Shal_3793
|
||||
| Shal_3793 | -156 | 4.9 | AAGCGTGATCTGGTTCACGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_3134 | ||||
| Ortholog function: membrane protein | ||||
| Shewanella loihica PV-4 | Shew_0455 | -94 | 4.9 | CAATGTGATCTGCTTCACACTC |
| Shewanella pealeana ATCC 700345 | Spea_3708 | -85 | 4.7 | AAGTGTGACCAGGTTCACGAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3793 | -156 | 4.9 | AAGCGTGATCTGGTTCACGAAT |
| Shewanella piezotolerans WP3 | swp_0564 | -100 | 5.7 | TTTTGTGATCTGCCTCACAAAT |
|
Position: -297
Score: 3.8 Sequence: CACTTTGATATGATTAACAGTT
Position: -110
Score: 3.9 Sequence: TAAAATGATGAGTGTCATAATT
Locus tag: Shal_3794
|
||||
| Shal_3794 | -297 | 3.8 | CACTTTGATATGATTAACAGTT | |
| -110 | 3.9 | TAAAATGATGAGTGTCATAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0572 | ||||
| Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17) | ||||
| Shewanella oneidensis MR-1 | SO0572 | -102 | 4.4 | TATTTTGACTCAAGTCAAAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_3304 | -102 | 4.3 | TATTTTGACTAAGGTCAAAATT |
| Shewanella sp W3-18-1 | Sputw3181_0637 | -102 | 4.3 | TATTTTGACTAAGGTCAAAATT |
| Shewanella sp ANA-3 | Shewana3_0572 | -102 | 4.4 | TATTTTGACTCATGTCAAAAAT |
| Shewanella sp MR-4 | Shewmr4_0573 | -102 | 4.5 | TATTTTGACGCATGTCAAAATT |
| Shewanella sp MR-7 | Shewmr7_3457 | -102 | 4.5 | TATTTTGACGCATGTCAAAATT |
| Shewanella baltica OS155 | Sbal_0533 | -102 | 4.3 | TATTTTGACTCAAGTCAAAAAA |
| Shewanella denitrificans OS217 | Sden_0534 | -100 | 3.7 | ATTTTTGACTAGGGTCAATATT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3510 | -237 | 4.2 | CATTGTGATCAATGTCATATCA |
| Shewanella loihica PV-4 | Shew_0454 | -124 | 4.3 | TATTTTGACGCCAGTCAAAAAA |
| Shewanella pealeana ATCC 700345 | Spea_3709 | -110 | 3.7 | AAAAATGACCAATGTCATAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_3794 | -110 | 3.9 | TAAAATGATGAGTGTCATAATT |
| Shewanella piezotolerans WP3 | swp_0563 | -110 | 3.6 | TTTATTGACGATAGTCAAAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0623 | -108 | 4.1 | TTTTTTGACTGAAGTCAAACTT |
|
Position: -117
Score: 4.7 Sequence: TTAGGTGATCTGCCTCACAAAG
Locus tag: Shal_3802
|
||||
| Shal_3802 | -117 | 4.7 | TTAGGTGATCTGCCTCACAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Spea_3717 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella amazonensis SB2B | Sama_3143 | -38 | 4.5 | AAACTTGAGCCGCTTCACAAAT |
| Shewanella pealeana ATCC 700345 | Spea_3717 | -117 | 4.7 | TTAGGTGATCTGCTTCACAAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_3802 | -117 | 4.7 | TTAGGTGATCTGCCTCACAAAG |
|
Position: -235
Score: 4.7 Sequence: TTTTGTTACATGGATCGCATAT
Locus tag: Shal_3818
|
||||
| Shal_3818 | -235 | 4.7 | TTTTGTTACATGGATCGCATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0543 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO0543 | -192 | 3.7 | CGTTATGCGCTAAATCACAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3331 | -88 | 4.2 | ATTTTTACTCTAATTCACAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0610 | -88 | 4.2 | ATTTTTACTCTAATTCACAAAA |
| Shewanella sp ANA-3 | Shewana3_0541 | -193 | 4.1 | AGTTATGCGCTAAATCACAAAA |
| Shewanella sp MR-4 | Shewmr4_0542 | -192 | 4 | AGTTATGCGCTTAATCACAAAA |
| Shewanella sp MR-7 | Shewmr7_3488 | -191 | 4 | AGTTATGCGCTTAATCACAAAA |
| Shewanella baltica OS155 | Sbal_0501 | -201 | 4.8 | TGTTGTGCTCTCAATCACAAAA |
| -88 | 3.9 | AATTTTACCCTGATTCACAAAA | ||
| Shewanella denitrificans OS217 | Sden_0657 | -34 | 3.9 | TAATATGACTAGAGTCAAACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3534 | -200 | 4 | ATATTTGATCACAAGCACACTC |
| Shewanella amazonensis SB2B | Sama_3164 | -240 | 3.9 | CATTGTTACTCACTTCATACAT |
| -126 | 3.9 | ATTTATGACCATACTCACAGAG | ||
| Shewanella loihica PV-4 | Shew_0428 | -190 | 4.2 | TAGTGTTAACTCGATCAAACAA |
| Shewanella pealeana ATCC 700345 | Spea_3733 | -197 | 4.2 | TTTTGCTACATAGATCGCATAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3818 | -235 | 4.7 | TTTTGTTACATGGATCGCATAT |
| Shewanella piezotolerans WP3 | swp_0532 | -156 | 4.6 | TTTTGTTACACAGATCGCATAT |
| Shewanella sediminis HAW-EB3 | Ssed_0598 | -213 | 4.2 | TAATGTTAAATCGATCTCACTT |
| Shewanella woodyi ATCC 51908 | Swoo_4355 | -215 | 3.8 | AATTGCTAGATAGATCTCACTT |
|
Position: -196
Score: 3.8 Sequence: TATAGCGATAAAGTTAAAAAAT
Locus tag: Shal_3859
|
||||
| Shal_3859 | -196 | 3.8 | TATAGCGATAAAGTTAAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4118 | ||||
| Ortholog function: NADP-dependent malic enzyme (EC 1.1.1.40) | ||||
| Shewanella oneidensis MR-1 | SO4118 | -318 | 4.4 | TATTGTAATTTAGTCAACATTT |
| -132 | 4.3 | AAATGTGACCTAATTGACGTAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0554 | -313 | 4 | TATTGTAATTTAGCCAAAATTT |
| -114 | 3.8 | GAATATGACAGGTTTCACGTTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3618 | -313 | 4 | TATTGTAATTTAGCCAAAATTT |
| -114 | 3.8 | GAATATGACAGGTTTCACGTTT | ||
| Shewanella sp ANA-3 | Shewana3_3669 | -312 | 4.2 | TATTGTAATTTAATCAACATTT |
| -119 | 4.2 | GGATATGATGGGTTTCACATTT | ||
| Shewanella sp MR-4 | Shewmr4_3492 | -312 | 4.2 | TATTGTAATTTAATCAACATTT |
| Shewanella sp MR-7 | Shewmr7_0460 | -312 | 4.2 | TATTGTAATTTAATCAACATTT |
| Shewanella denitrificans OS217 | Sden_3353 | -298 | 3.8 | TCTTGTTATTTAAACAACATTT |
| -197 | 4.2 | TAATGTGATGCATAGCAGCCTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3757 | -303 | 4.1 | TATTGTTATTTAGACAAAATAA |
| Shewanella pealeana ATCC 700345 | Spea_3774 | -196 | 3.8 | TATAGCGATAAAGTTAAAAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3859 | -196 | 3.8 | TATAGCGATAAAGTTAAAAAAT |
| Shewanella piezotolerans WP3 | swp_0481 | -181 | 3.8 | TATAGCGATAAAGTTAAAATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4423 | -345 | 3.8 | AAGTTTTATCTAGTTAACCCTT |
|
Position: -94
Score: 4.1 Sequence: TTTGTTGATCTATCTCACGGTT
Locus tag: Shal_3898
|
||||
| Shal_3898 | -94 | 4.1 | TTTGTTGATCTATCTCACGGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdrC | ||||
| Ortholog function: fumarate reductase cytochrome b subunit | ||||
| Shewanella oneidensis MR-1 | SO0397 | -79 | 3.9 | ATTTGTGAGCGATATTAATTTT |
| Shewanella oneidensis MR-1 | SO0397 | -144 | 4 | TTTTGTGATCATCTTCTAAGAG |
| -79 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3440 | -67 | 4.1 | ATTTGTGAGCGATATTAACTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3440 | -144 | 4.3 | TTTTGTGATCTTCTTCTAAGAG |
| -67 | 4.1 | ATTTGTGAGCGATATTAACTTT | ||
| Shewanella sp W3-18-1 | Sputw3181_0499 | -67 | 4.1 | ATTTGTGAGCGATATTAACTTT |
| Shewanella sp W3-18-1 | Sputw3181_0499 | -144 | 4.3 | TTTTGTGATCTTCTTCTAAGAG |
| -67 | 4.1 | ATTTGTGAGCGATATTAACTTT | ||
| Shewanella sp ANA-3 | Shewana3_0402 | -77 | 3.9 | ATTTGTGAGCGATATTAATTTT |
| Shewanella sp ANA-3 | Shewana3_0402 | -144 | 4.2 | TTTTGTGATCCTCTTCTAAGAG |
| -77 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella sp MR-4 | Shewmr4_0403 | -77 | 3.9 | ATTTGTGAGCGATATTAATTTT |
| Shewanella sp MR-4 | Shewmr4_0403 | -144 | 4.2 | TTTTGTGATCCTCTTCTAAGAG |
| -77 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella sp MR-7 | Shewmr7_3622 | -76 | 3.9 | ATTTGTGAGCGATATTAATTTT |
| Shewanella sp MR-7 | Shewmr7_3622 | -144 | 4.2 | TTTTGTGATCCTCTTCTAAGAG |
| -76 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella baltica OS155 | Sbal_3936 | -105 | 4.1 | TCAATTGATCTGGCTCACGTTT |
| Shewanella baltica OS155 | Sbal_3936 | -145 | 4.3 | TTTTGTGATCTTCTTCTAAGAG |
| -105 | 4.1 | TCAATTGATCTGGCTCACGTTT | ||
| Shewanella amazonensis SB2B | Sama_3221 | -144 | 4.1 | GTTTGTGATCCGCTTCCAATAA |
| Shewanella loihica PV-4 | Shew_0333 | -98 | 4.4 | TGTTTTGATCTATCTCACGGTT |
| Shewanella loihica PV-4 | Shew_0333 | -98 | 4.4 | TGTTTTGATCTATCTCACGGTT |
| Shewanella pealeana ATCC 700345 | Spea_0393 | -138 | 4.7 | ATTTGTGATCTTGATCTAATAG |
| -106 | 4 | AAGGGTGAGTTCCTTCACGAAA | ||
| -94 | 4.1 | TTTGTTGATCTATCTCACGGTT | ||
| Shewanella pealeana ATCC 700345 | Spea_0393 | -94 | 4.1 | TTTGTTGATCTATCTCACGGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3898 | -138 | 3.9 | GTTTGTGATCTACGTCTAATAG |
| -106 | 4.2 | TGTAGTGACACTGATCACGAAA | ||
| -94 | 4.1 | TTTGTTGATCTATCTCACGGTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3898 | -94 | 4.1 | TTTGTTGATCTATCTCACGGTT |
| Shewanella piezotolerans WP3 | swp_0429 | -106 | 3.8 | TAGGGTGAGCAAAGTCACGATT |
| -94 | 3.9 | TTTGTTGATCTATCTCACTGTT | ||
| Shewanella piezotolerans WP3 | swp_0429 | -94 | 3.9 | TTTGTTGATCTATCTCACTGTT |
| Shewanella sediminis HAW-EB3 | Ssed_4115 | -104 | 4.4 | TGTTTTGATCTGCCTCACGGTT |
| -74 | 3.9 | ATATGTGAGCGACATTATGATT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4115 | -104 | 4.4 | TGTTTTGATCTGCCTCACGGTT |
| -74 | 3.9 | ATATGTGAGCGACATTATGATT | ||
| Shewanella woodyi ATCC 51908 | Swoo_0508 | -109 | 4.7 | TGATTTGATCTGTCTCACAGTA |
| -79 | 4 | ATTTGTGAGCGACATTATCTAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0508 | -109 | 4.7 | TGATTTGATCTGTCTCACAGTA |
| -79 | 4 | ATTTGTGAGCGACATTATCTAA | ||
|
Position: -138
Score: 3.9 Sequence: GTTTGTGATCTACGTCTAATAG
Position: -106
Score: 4.2 Sequence: TGTAGTGACACTGATCACGAAA
Locus tag: Shal_3899
|
||||
| Shal_3899 | -138 | 3.9 | GTTTGTGATCTACGTCTAATAG | |
| -106 | 4.2 | TGTAGTGACACTGATCACGAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdC1 | ||||
| Ortholog function: Fumarate reductase cytochrome b subunit | ||||
| Shewanella oneidensis MR-1 | SO0396 | -144 | 4 | TTTTGTGATCATCTTCTAAGAG |
| -79 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3441 | -144 | 4.3 | TTTTGTGATCTTCTTCTAAGAG |
| -67 | 4.1 | ATTTGTGAGCGATATTAACTTT | ||
| Shewanella sp W3-18-1 | Sputw3181_0498 | -144 | 4.3 | TTTTGTGATCTTCTTCTAAGAG |
| -67 | 4.1 | ATTTGTGAGCGATATTAACTTT | ||
| Shewanella sp ANA-3 | Shewana3_0401 | -144 | 4.2 | TTTTGTGATCCTCTTCTAAGAG |
| -77 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella sp MR-4 | Shewmr4_0402 | -144 | 4.2 | TTTTGTGATCCTCTTCTAAGAG |
| -77 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella sp MR-7 | Shewmr7_3623 | -144 | 4.2 | TTTTGTGATCCTCTTCTAAGAG |
| -76 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella baltica OS155 | Sbal_3937 | -145 | 4.3 | TTTTGTGATCTTCTTCTAAGAG |
| -105 | 4.1 | TCAATTGATCTGGCTCACGTTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0456 | -135 | 3.8 | TTGTGTGACCCGCTTCTAACTC |
| -103 | 3.8 | ATAGGTGAACATTATCACGGTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0456 | -135 | 3.8 | TTGTGTGACCCGCTTCTAACTC |
| -103 | 3.8 | ATAGGTGAACATTATCACGGTT | ||
| Shewanella amazonensis SB2B | Sama_3222 | -144 | 4.1 | GTTTGTGATCCGCTTCCAATAA |
| Shewanella pealeana ATCC 700345 | Spea_0392 | -138 | 4.7 | ATTTGTGATCTTGATCTAATAG |
| -106 | 4 | AAGGGTGAGTTCCTTCACGAAA | ||
| -94 | 4.1 | TTTGTTGATCTATCTCACGGTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3899 | -138 | 3.9 | GTTTGTGATCTACGTCTAATAG |
| -106 | 4.2 | TGTAGTGACACTGATCACGAAA | ||
| -94 | 4.1 | TTTGTTGATCTATCTCACGGTT | ||
| Shewanella piezotolerans WP3 | swp_0428 | -106 | 3.8 | TAGGGTGAGCAAAGTCACGATT |
| -94 | 3.9 | TTTGTTGATCTATCTCACTGTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4116 | -126 | 4.5 | GTTTGTGATCTGCTTCAAATAG |
| Shewanella woodyi ATCC 51908 | Swoo_0507 | -138 | 4.8 | GTTTGTGATGTGGTTCAAAAAA |
|
Position: -281
Score: 3.9 Sequence: TTTCGTGATCAGTGTCACTACA
Locus tag: Shal_3900
|
||||
| Shal_3900 | -281 | 3.9 | TTTCGTGATCAGTGTCACTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: prmA | ||||
| Ortholog function: ribosomal protein L11 methyltransferase (EC 2.1.1.-) | ||||
| Shewanella loihica PV-4 | Shew_0331 | -274 | 3.8 | AAGCGTGAGACACCTCACCCTG |
| -242 | 4.1 | ACATTTGACGTCGATCACAAAC | ||
| Shewanella pealeana ATCC 700345 | Spea_0391 | -283 | 4.3 | TTTCGTGAAGGAACTCACCCTT |
| -251 | 4.1 | CTATTAGATCAAGATCACAAAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3900 | -281 | 3.9 | TTTCGTGATCAGTGTCACTACA |
| -249 | 3.7 | CTATTAGACGTAGATCACAAAC | ||
| Shewanella piezotolerans WP3 | swp_0427 | -286 | 4.5 | AATCGTGACTTTGCTCACCCTA |
| Shewanella sediminis HAW-EB3 | Ssed_4117 | -53 | 5 | TAATGTGATTGGTATTACAATA |
| Shewanella woodyi ATCC 51908 | Swoo_0506 | -233 | 4.5 | TTTTTTGAACCACATCACAAAC |
|
Position: -88
Score: 5.3 Sequence: AAGCGTGATGTTGATCACATTT
Locus tag: Shal_3916
|
||||
| Shal_3916 | -88 | 5.3 | AAGCGTGATGTTGATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyaA | ||||
| Ortholog function: Adenylate cyclase (EC 4.6.1.1) | ||||
| Shewanella oneidensis MR-1 | SO4312 | -91 | 5 | AAGTGTGATGGACCTCTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3586 | -91 | 5.4 | AAATGTGATGCAGATCTCATTT |
| -51 | 3.8 | AAGTGTTAACATAAGCACACTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3725 | -91 | 5.4 | AAATGTGATGCAGATCTCATTT |
| -51 | 3.8 | AAGTGTTAACATAAGCACACTT | ||
| Shewanella sp ANA-3 | Shewana3_0387 | -92 | 4.7 | AAGTGTGACGAACTTCTCATTT |
| -52 | 3.9 | AAGTGTTAACATGAGCACACTT | ||
| Shewanella sp MR-4 | Shewmr4_0389 | -92 | 4.7 | AAGTGTGACGAACTTCTCATTT |
| -52 | 3.9 | AAGTGTTAACATGAGCACACTT | ||
| Shewanella sp MR-7 | Shewmr7_3637 | -92 | 4.7 | AAGTGTGACGAACTTCTCATTT |
| -52 | 3.9 | AAGTGTTAACATGAGCACACTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0441 | -129 | 3.8 | AAATGCTACGATGATCACCATT |
| -100 | 3.9 | AAATGTGATCTTGATTGGCAAA | ||
| Shewanella amazonensis SB2B | Sama_3253 | -90 | 5.4 | AAATGTGATCTCTATCGCAAAT |
| Shewanella loihica PV-4 | Shew_0319 | -88 | 5.1 | AAGTGTGATCCAGCTCTCAAAT |
| Shewanella pealeana ATCC 700345 | Spea_0374 | -87 | 5.3 | AAGTGTGATCTTGATCGCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3916 | -88 | 5.3 | AAGCGTGATGTTGATCACATTT |
| Shewanella piezotolerans WP3 | swp_0403 | -106 | 5.5 | AAATGTGATCGGAGTCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4132 | -90 | 5.2 | AAGTGTGATCTTGATCTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0484 | -98 | 5 | AAGTGTGATCTTGGTCTCATTT |
|
Position: -133
Score: 5.1 Sequence: AAATGTGATCAACATCACGCTT
Position: 8
Score: 4.1 Sequence: AAATCTGATCCGAATCGCAACT
Locus tag: Shal_3917
|
||||
| Shal_3917 | -133 | 5.1 | AAATGTGATCAACATCACGCTT | |
| 8 | 4.1 | AAATCTGATCCGAATCGCAACT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemC | ||||
| Ortholog function: Porphobilinogen deaminase (EC 2.5.1.61) | ||||
| Shewanella oneidensis MR-1 | SO4313 | -172 | 3.9 | GATTGTGCTCATGTTAACACTT |
| -132 | 4.5 | AAATGAGAGGTCCATCACACTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3587 | -173 | 4.1 | AAGTGTGCTTATGTTAACACTT |
| -133 | 5.2 | AAATGAGATCTGCATCACATTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3726 | -173 | 4.1 | AAGTGTGCTTATGTTAACACTT |
| -133 | 5.2 | AAATGAGATCTGCATCACATTT | ||
| Shewanella sp ANA-3 | Shewana3_0386 | -172 | 4.2 | AAGTGTGCTCATGTTAACACTT |
| -132 | 4.3 | AAATGAGAAGTTCGTCACACTT | ||
| Shewanella sp MR-4 | Shewmr4_0388 | -172 | 4.2 | AAGTGTGCTCATGTTAACACTT |
| -132 | 4.3 | AAATGAGAAGTTCGTCACACTT | ||
| Shewanella sp MR-7 | Shewmr7_3638 | -172 | 4.2 | AAGTGTGCTCATGTTAACACTT |
| -132 | 4.3 | AAATGAGAAGTTCGTCACACTT | ||
| Shewanella baltica OS155 | Sbal_4000 | -132 | 4.9 | AAATGTGAAGTCCGTCACACTT |
| Shewanella denitrificans OS217 | Sden_0388 | -85 | 3.9 | AAATCTGCTTTGCTTCAAACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0440 | -167 | 4 | AATGGTGATCATCGTAGCATTT |
| Shewanella amazonensis SB2B | Sama_3254 | -89 | 5.1 | ATTTGCGATAGAGATCACATTT |
| Shewanella loihica PV-4 | Shew_0318 | -119 | 4.7 | ATTTGAGAGCTGGATCACACTT |
| Shewanella pealeana ATCC 700345 | Spea_0373 | -133 | 5 | AAATGCGATCAAGATCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3917 | -133 | 5.1 | AAATGTGATCAACATCACGCTT |
| Shewanella piezotolerans WP3 | swp_0402 | -40 | 4.3 | AAATGTAATCCGTATCGCAACA |
| Shewanella sediminis HAW-EB3 | Ssed_4133 | -133 | 4.9 | AAATGAGATCAAGATCACACTT |
| Shewanella woodyi ATCC 51908 | Swoo_0483 | -229 | 4.6 | AAATGAGACCAAGATCACACTT |
|
Position: -125
Score: 3.4 Sequence: CAACGTGACGTTTCGAATATAT
Locus tag: Shal_3945
|
||||
| Shal_3945 | -125 | 3.4 | CAACGTGACGTTTCGAATATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ilvC | ||||
| Ortholog function: Ketol-acid reductoisomerase (EC 1.1.1.86) | ||||
| Shewanella oneidensis MR-1 | SO4349 | -86 | 4 | TATAGTGACTTCAATCACAACC |
| Shewanella putrefaciens CN-32 | Sputcn32_3615 | -86 | 4.3 | TATAGTGATTTCAATCACAACC |
| Shewanella sp W3-18-1 | Sputw3181_3755 | -86 | 4.3 | TATAGTGATTTCAATCACAACC |
| Shewanella sp ANA-3 | Shewana3_0355 | -86 | 4.3 | TATAGTGATTTCAATCACAACC |
| Shewanella sp MR-4 | Shewmr4_0361 | -86 | 4.3 | TATAGTGATTTCAATCACAACC |
| Shewanella sp MR-7 | Shewmr7_3665 | -86 | 4.3 | TATAGTGATTTCAATCACAACC |
| Shewanella baltica OS155 | Sbal_4032 | -85 | 4.3 | TATAGTGATTTCAATCACAACC |
| Shewanella frigidimarina NCIMB 400 | Sfri_0421 | -85 | 4.1 | TATAGTGACTTCAATCACAACG |
| Shewanella amazonensis SB2B | Sama_3282 | -88 | 4.4 | TATAGTGAGTTCAATCACAATC |
| Shewanella loihica PV-4 | Shew_0288 | -126 | 3.7 | CAATGTGACGTTTCGAATATAT |
| -77 | 3.8 | ATAGTTGATCTCATTCACAGCT | ||
| Shewanella piezotolerans WP3 | swp_0358 | -77 | 4.6 | TATAGTGATCTCAATCACAGCT |
| Shewanella sediminis HAW-EB3 | Ssed_4166 | -78 | 4 | TATAGTGATCTCAATCACTGCT |
| Shewanella woodyi ATCC 51908 | Swoo_0441 | -78 | 3.5 | TATAGTGAATTCAATCACTGCT |
|
Position: -247
Score: 4.2 Sequence: ATTCGTGAGGCAGCTCTCGAAT
Position: -138
Score: 4.3 Sequence: TTGTATGACGTAACTCACAAAG
Locus tag: Shal_3965
|
||||
| Shal_3965 | -247 | 4.2 | ATTCGTGAGGCAGCTCTCGAAT | |
| -138 | 4.3 | TTGTATGACGTAACTCACAAAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1415 | ||||
| Ortholog function: transcriptional regulator, TetR family | ||||
| Shewanella oneidensis MR-1 | SO1415 | -135 | 3.8 | GTATTTGAAGTAACTCACAAAG |
| -94 | 4 | AGGTGTGACCTTTATCCCGATT | ||
| Shewanella sp MR-4 | Shewmr4_0298 | -241 | 3.8 | ATTCGTGAGTTATCTCGTGAAT |
| -94 | 4 | TGATGTGAGCTTAATCCCGATT | ||
| Shewanella loihica PV-4 | Shew_0277 | -137 | 4.4 | TTGTTTGACGTAATTCACAAAG |
| Shewanella pealeana ATCC 700345 | Spea_0326 | -247 | 4.1 | ATTCGTGAGTCAGCTCTCGAAT |
| -138 | 4.5 | TTATATGACGTAATTCACAAAG | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3965 | -247 | 4.2 | ATTCGTGAGGCAGCTCTCGAAT |
| -138 | 4.3 | TTGTATGACGTAACTCACAAAG | ||
| Shewanella sediminis HAW-EB3 | Ssed_4183 | -259 | 3.9 | ATTCGTGAAGCAGATCTCGAAG |
| -136 | 4.1 | TTACATGAGGTAACTCACAAAG | ||
|
Position: -269
Score: 4 Sequence: AATCGGGATTCACTTCACGCTA
Position: -228
Score: 4.2 Sequence: CTTTGTGAGTTACGTCATACAA
Position: -119
Score: 3.9 Sequence: ATTCGAGAGCTGCCTCACGAAT
Position: -78
Score: 4.4 Sequence: TGGCGTGACTTAGTTCACCTTT
Locus tag: Shal_3966
|
||||
| Shal_3966 | -269 | 4 | AATCGGGATTCACTTCACGCTA | |
| -228 | 4.2 | CTTTGTGAGTTACGTCATACAA | ||
| -119 | 3.9 | ATTCGAGAGCTGCCTCACGAAT | ||
| -78 | 4.4 | TGGCGTGACTTAGTTCACCTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1414 | ||||
| Ortholog function: flavocytochrome c flavin subunit | ||||
| Shewanella oneidensis MR-1 | SO1414 | -220 | 4.3 | CTTTGTGAGTTACTTCAAATAC |
| Shewanella sp MR-4 | Shewmr4_0299 | -263 | 4 | AATCGGGATTAAGCTCACATCA |
| Shewanella loihica PV-4 | Shew_0276 | -216 | 4.2 | CTTTGTGAATTACGTCAAACAA |
| Shewanella pealeana ATCC 700345 | Spea_0325 | -228 | 4.3 | CTTTGTGAATTACGTCATATAA |
| -181 | 4.1 | CAGATTGATTCCTTTCACATTT | ||
| -78 | 4.4 | TGGCGTGACTTAGTTCACCTTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3966 | -269 | 4 | AATCGGGATTCACTTCACGCTA |
| -228 | 4.2 | CTTTGTGAGTTACGTCATACAA | ||
| -78 | 4.4 | TGGCGTGACTTAGTTCACCTTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4184 | -280 | 3.8 | AATCGGGATTAGCTTCACGCAA |
| -239 | 4.1 | CTTTGTGAGTTACCTCATGTAA | ||
| -116 | 4 | CTTCGAGATCTGCTTCACGAAT | ||
|
Position: -156
Score: 4.1 Sequence: ATTCGCGACTTGGCTCACGAAT
Position: -115
Score: 4.1 Sequence: CTGCGTGATCCAATTCAACTTT
Locus tag: Shal_3970
|
||||
| Shal_3970 | -156 | 4.1 | ATTCGCGACTTGGCTCACGAAT | |
| -115 | 4.1 | CTGCGTGATCCAATTCAACTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1410 | ||||
| Ortholog function: conserved domain protein | ||||
| Shewanella oneidensis MR-1 | SO1410 | -122 | 4.5 | TGGCGTGATCCAATTCACCTTT |
| -82 | 4.1 | TATTGTTAGTCACGTAACAAAA | ||
| Shewanella sp MR-4 | Shewmr4_0303 | -108 | 4.4 | TGCCGTGATCCAATTCACCTTT |
| -68 | 4.1 | TATTGTTAGTCACGTAACAATA | ||
| Shewanella loihica PV-4 | Shew_0272 | -151 | 3.9 | ATTCGCGAGCCAAGTCACGAAT |
| -110 | 4.6 | TGGCGTGATCCATTTCACCTTT | ||
| Shewanella pealeana ATCC 700345 | Spea_0321 | -157 | 4.1 | ATTCGCGACCGAGCTCACGAAT |
| -116 | 4.1 | CTGCGTGATCCATTTCAACTTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3970 | -156 | 4.1 | ATTCGCGACTTGGCTCACGAAT |
| -115 | 4.1 | CTGCGTGATCCAATTCAACTTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4188 | -154 | 3.9 | ATTCGCGAGCTCTGTCACGAAT |
| -113 | 4.2 | GTGCGTGATCCAATTCACCTTT | ||
|
Position: -294
Score: 3.4 Sequence: TAATGCATTCTCTCTCATAAAA
Position: -96
Score: 4 Sequence: TTTTGTGCACATCTTCAAACTT
Locus tag: Shal_3986
|
||||
| Shal_3986 | -294 | 3.4 | TAATGCATTCTCTCTCATAAAA | |
| -96 | 4 | TTTTGTGCACATCTTCAAACTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygbA | ||||
| Ortholog function: nitrosative stress induced protein | ||||
| Shewanella oneidensis MR-1 | SO0324 | -97 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_3663 | -96 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella sp W3-18-1 | Sputw3181_3804 | -96 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella sp ANA-3 | Shewana3_3845 | -97 | 4.1 | TTTTGTGCGCATCTTCATAAAT |
| Shewanella sp MR-4 | Shewmr4_3649 | -97 | 4.1 | TTTTGTGCGCATCTTCATAAAT |
| Shewanella sp MR-7 | Shewmr7_0295 | -97 | 4.1 | TTTTGTGCGCATCTTCATAAAT |
| Shewanella baltica OS155 | Sbal_4067 | -96 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0404 | -142 | 4 | TTTTGCGATCCCAACCTCAAAA |
| Shewanella amazonensis SB2B | Sama_3326 | -94 | 3.6 | TTTTGTGCGCATCTTCATGCTT |
| Shewanella loihica PV-4 | Shew_0259 | -96 | 4.1 | TTTTGTGCGCATCTTCATAATT |
| Shewanella pealeana ATCC 700345 | Spea_0303 | -96 | 3.9 | TTTTGTGCACATCTTCAAAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3986 | -96 | 4 | TTTTGTGCACATCTTCAAACTT |
| Shewanella piezotolerans WP3 | swp_2171 | -96 | 4 | TTTTGTGCGCACCTTCAAACTT |
| Shewanella sediminis HAW-EB3 | Ssed_4199 | -187 | 3.9 | TTTTGTGCACATCTTCATACTT |
| Shewanella woodyi ATCC 51908 | Swoo_0395 | -82 | 3.4 | TTCTGTGCGCACCTTCATAGAT |
|
Position: -133
Score: 4.3 Sequence: ATAGGTGATCTTTATCATAGTA
Locus tag: Shal_4072
|
||||
| Shal_4072 | -133 | 4.3 | ATAGGTGATCTTTATCATAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0296 | ||||
| Ortholog function: integral membrane domain protein | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_0385 | -7 | 4.1 | AAGTGTAATGAAATCCACAATA |
| Shewanella pealeana ATCC 700345 | Spea_0248 | -118 | 4.3 | ATAGGTGATCTTTATCATAGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_4072 | -133 | 4.3 | ATAGGTGATCTTTATCATAGTA |
| Shewanella piezotolerans WP3 | swp_2077 | -120 | 4.3 | ATGAGTGATCTTGTTCATAGTA |
|
Position: -106
Score: 5 Sequence: AAAAGTGATATAGAGCACATTA
Locus tag: Shal_4095
|
||||
| Shal_4095 | -106 | 5 | AAAAGTGATATAGAGCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppc | ||||
| Ortholog function: phosphoenolpyruvate carboxylase (EC 4.1.1.31) | ||||
| Shewanella sp ANA-3 | Shewana3_3906 | -233 | 3.7 | AATATTGCGTTAGCTCGCATTT |
| -189 | 3.7 | TATCGCGATTAGTTGCATATAA | ||
| Shewanella sp MR-4 | Shewmr4_3710 | -228 | 3.7 | AATATTGCGTTAGCTCGCATTT |
| -184 | 4.3 | TATCGTGATTAGTTGCATATAA | ||
| Shewanella sp MR-7 | Shewmr7_0235 | -228 | 3.7 | AATATTGCGTTAGCTCGCATTT |
| -184 | 4.3 | TATCGTGATTAGTTGCATATAA | ||
| Shewanella loihica PV-4 | Shew_0200 | -107 | 4.3 | CAAGGTGATATAGAACACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4095 | -106 | 5 | AAAAGTGATATAGAGCACATTA |
| Shewanella piezotolerans WP3 | swp_2053 | -106 | 4.4 | TAAAGTGAGGTAGAGCACATTC |
| Shewanella sediminis HAW-EB3 | Ssed_4278 | -111 | 3.9 | CCGAGTGATGTAGAGCACATAA |
| Shewanella woodyi ATCC 51908 | Swoo_0327 | -111 | 4.7 | AGAAGTGATGTAGAACACATAA |
|
Position: -230
Score: 4.4 Sequence: CAATTTGATGTAGTTCGAATAT
Locus tag: Shal_4103
|
||||
| Shal_4103 | -230 | 4.4 | CAATTTGATGTAGTTCGAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: scyA | ||||
| Ortholog function: cytochrome c-type protein | ||||
| Shewanella oneidensis MR-1 | SO0264 | -234 | 4 | CAATTTGATATGGTTCCAATAA |
| -125 | 4.1 | TGCTGAGATTCTAATCACAAAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3726 | -229 | 4 | CAATTTGATGTGGTTCCAATAA |
| -129 | 3.7 | CGCTGAGATTCTAATCACAAAA | ||
| Shewanella sp W3-18-1 | Sputw3181_0189 | -229 | 4 | CAATTTGATGTGGTTCCAATAA |
| -129 | 3.7 | CGCTGAGATTCTAATCACAAAA | ||
| Shewanella sp ANA-3 | Shewana3_0232 | -234 | 4 | CAATTTGATGTGGTTCCAATAA |
| -125 | 4.1 | TGCTGAGATTCTAATCACAAAA | ||
| Shewanella sp MR-4 | Shewmr4_0232 | -234 | 4 | CAATTTGATGTGGTTCCAATAA |
| -125 | 4.1 | TGCTGAGATTCTAATCACAAAA | ||
| Shewanella sp MR-7 | Shewmr7_0227 | -234 | 4 | CAATTTGATGTGGTTCCAATAA |
| -125 | 3.7 | CGCTGAGATTCTAATCACAAAA | ||
| Shewanella baltica OS155 | Sbal_0229 | -228 | 3.9 | CAATATGATGTGGTTCCAATAA |
| -128 | 4.5 | TGTTGAGATTCTAATCACAAAA | ||
| Shewanella denitrificans OS217 | Sden_3568 | -131 | 3.8 | AGCTGGGAGGCTTATCACAAAA |
| -109 | 4.1 | AGGTGTGATTTTATTAACTTTA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0180 | -233 | 3.9 | CAATTTGATATGGTTCCAAAAT |
| -133 | 4.1 | AGCTGAGATTGTTATCACAAAA | ||
| Shewanella amazonensis SB2B | Sama_0246 | -225 | 4 | CAATTTGATGCAGTTCCAATAA |
| Shewanella loihica PV-4 | Shew_0191 | -242 | 3.8 | CAATTTGATATGCTTCCAAAAA |
| -131 | 4.8 | AATTCTGATATTAATCACAAAA | ||
| Shewanella pealeana ATCC 700345 | Spea_0216 | -230 | 4.4 | CAATTTGATGTAGTTCGAATAT |
| -130 | 4 | TGGCGAGATTAATATCACAAAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_4103 | -230 | 4.4 | CAATTTGATGTAGTTCGAATAT |
| Shewanella piezotolerans WP3 | swp_2044 | -231 | 4.4 | CAATTTGATGTAGTTCGAATAT |
| -131 | 4.8 | TAACGCGATTTAAATCACAAAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4286 | -145 | 4.4 | AGCTTTGATTGAAATCACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4658 | -256 | 3.8 | CAATTTGATATGCTTCCAAAAA |
| -144 | 3.9 | TACTTTGATTAAAGTCATAAAA | ||
|
Position: -212
Score: 3.9 Sequence: TTTTGTGACATAAACCGTACTA
Position: -112
Score: 3.8 Sequence: ATATTCGAACTACATCAAATTG
Locus tag: Shal_4104
|
||||
| Shal_4104 | -212 | 3.9 | TTTTGTGACATAAACCGTACTA | |
| -112 | 3.8 | ATATTCGAACTACATCAAATTG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmA | ||||
| Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA | ||||
| Shewanella oneidensis MR-1 | SO0263 | -222 | 4.2 | TTTTGTGATTAGAATCTCAGCA |
| Shewanella putrefaciens CN-32 | Sputcn32_3727 | -213 | 3.9 | TTTTGTGATTAGAATCTCAGCG |
| Shewanella sp W3-18-1 | Sputw3181_0188 | -213 | 3.9 | TTTTGTGATTAGAATCTCAGCG |
| Shewanella sp ANA-3 | Shewana3_0231 | -222 | 4.2 | TTTTGTGATTAGAATCTCAGCA |
| Shewanella sp MR-4 | Shewmr4_0231 | -222 | 4.2 | TTTTGTGATTAGAATCTCAGCA |
| Shewanella sp MR-7 | Shewmr7_0226 | -222 | 3.9 | TTTTGTGATTAGAATCTCAGCG |
| Shewanella baltica OS155 | Sbal_0228 | -212 | 4.4 | TTTTGTGATTAGAATCTCAACA |
| Shewanella denitrificans OS217 | Sden_3569 | -186 | 4 | TTTTGTGATAAGCCTCCCAGCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0179 | -213 | 4.2 | TTTTGTGATAACAATCTCAGCT |
| Shewanella amazonensis SB2B | Sama_0245 | -207 | 3.8 | TTTTGTGAGTTCCCTCCCAGCT |
| Shewanella loihica PV-4 | Shew_0190 | -223 | 4.8 | TTTTGTGATTAATATCAGAATT |
| Shewanella pealeana ATCC 700345 | Spea_0215 | -212 | 4.1 | TTTTGTGATATTAATCTCGCCA |
| -112 | 3.8 | ATATTCGAACTACATCAAATTG | ||
| Shewanella halifaxensis HAW-EB4 | Shal_4104 | -212 | 3.9 | TTTTGTGACATAAACCGTACTA |
| -112 | 3.8 | ATATTCGAACTACATCAAATTG | ||
| Shewanella piezotolerans WP3 | swp_2043 | -212 | 5 | ATTTGTGATTTAAATCGCGTTA |
| -112 | 3.8 | ATATTCGAACTACATCAAATTG | ||
| Shewanella sediminis HAW-EB3 | Ssed_4287 | -223 | 4.5 | TTTTGTGATTTCAATCAAAGCT |
| Shewanella woodyi ATCC 51908 | Swoo_4659 | -224 | 4.2 | TTTTATGACTTTAATCAAAGTA |
|
Position: -112
Score: 4.8 Sequence: TTTTTTGATCTTGCCCACATAT
Locus tag: Shal_4178
|
||||
| Shal_4178 | -112 | 4.8 | TTTTTTGATCTTGCCCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pckA | ||||
| Ortholog function: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | ||||
| Shewanella oneidensis MR-1 | SO0162 | -150 | 3.8 | CTCAATGATCCAGCTCACACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3571 | -151 | 4 | CACCATGATCCAGTTCACACTT |
| Shewanella sp W3-18-1 | Sputw3181_3708 | -151 | 4 | CACCATGATCCAGTTCACACTT |
| Shewanella sp ANA-3 | Shewana3_0147 | -151 | 3.8 | CTCAATGATCCAGCTCACACTT |
| Shewanella sp MR-4 | Shewmr4_0152 | -149 | 3.8 | CTCAATGATCCAGCTCACACTT |
| Shewanella sp MR-7 | Shewmr7_0147 | -149 | 3.8 | CTCAATGATCCAGCTCACACTT |
| Shewanella amazonensis SB2B | Sama_0165 | -145 | 4.1 | TTTTCAGATCCGGCTCACACAT |
| Shewanella loihica PV-4 | Shew_3623 | -128 | 4.6 | TTTCGCGATCTTCCTCACACAT |
| Shewanella pealeana ATCC 700345 | Spea_0140 | -112 | 4.9 | TTTTTTGATCTAGTACACATAT |
| Shewanella halifaxensis HAW-EB4 | Shal_4178 | -112 | 4.8 | TTTTTTGATCTTGCCCACATAT |
| Shewanella piezotolerans WP3 | swp_0182 | -113 | 4.9 | TTTTTTGATCTAGTCCACATAT |
| Shewanella sediminis HAW-EB3 | Ssed_4362 | -142 | 4.1 | AAACACGATCTTCCTCACACAT |
| Shewanella woodyi ATCC 51908 | Swoo_4740 | -100 | 3.8 | AATCGTGACATAGCGCAAAGAC |
|
Position: -96
Score: 4.7 Sequence: TTATGTGATCGGGGTAATATTT
Locus tag: Shal_4221
|
||||
| Shal_4221 | -96 | 4.7 | TTATGTGATCGGGGTAATATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: engB | ||||
| Ortholog function: GTP-binding protein EngB | ||||
| Shewanella oneidensis MR-1 | SO4667 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3907 | -96 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella sp W3-18-1 | Sputw3181_0044 | -96 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella sp ANA-3 | Shewana3_4110 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella sp MR-4 | Shewmr4_3906 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella sp MR-7 | Shewmr7_3998 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella baltica OS155 | Sbal_0052 | -95 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella denitrificans OS217 | Sden_3621 | -182 | 3.8 | TATTATGCTCGAAATAATATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3944 | -104 | 4.7 | TAATGTGATCAGGCTAATATTT |
| Shewanella amazonensis SB2B | Sama_0092 | -96 | 4.1 | ATATGTGATCGGGGCAATATTT |
| Shewanella loihica PV-4 | Shew_3715 | -95 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella pealeana ATCC 700345 | Spea_0101 | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4221 | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella piezotolerans WP3 | swp_5074a | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0095 | -95 | 4.7 | TTATGTGATCGAGGTAATATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0058 | -110 | 4.8 | TATTGTGATCGAGGTAATATTT |
|
Position: -95
Score: 4.4 Sequence: AAATATTACCCCGATCACATAA
Locus tag: Shal_4222
|
||||
| Shal_4222 | -95 | 4.4 | AAATATTACCCCGATCACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cytcB | ||||
| Ortholog function: Cytochrome c4 | ||||
| Shewanella oneidensis MR-1 | SO4666 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella oneidensis MR-1 | SO4666 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3908 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3908 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp W3-18-1 | Sputw3181_0043 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp W3-18-1 | Sputw3181_0043 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp ANA-3 | Shewana3_4111 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp ANA-3 | Shewana3_4111 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-4 | Shewmr4_3907 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-4 | Shewmr4_3907 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-7 | Shewmr7_3999 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-7 | Shewmr7_3999 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella baltica OS155 | Sbal_0051 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella baltica OS155 | Sbal_0051 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella denitrificans OS217 | Sden_3622 | -94 | 3.7 | AAATATTATTTCGAGCATAATA |
| Shewanella denitrificans OS217 | Sden_3622 | -94 | 3.7 | AAATATTATTTCGAGCATAATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3945 | -181 | 4.3 | AAATATTAGCCTGATCACATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3945 | -181 | 4.3 | AAATATTAGCCTGATCACATTA |
| Shewanella amazonensis SB2B | Sama_0091 | -95 | 3.7 | AAATATTGCCCCGATCACATAT |
| Shewanella loihica PV-4 | Shew_3716 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella loihica PV-4 | Shew_3716 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella pealeana ATCC 700345 | Spea_0100 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella pealeana ATCC 700345 | Spea_0100 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4222 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4222 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella piezotolerans WP3 | swp_5075 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella piezotolerans WP3 | swp_5075 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella sediminis HAW-EB3 | Ssed_0094 | -96 | 4.5 | AAATATTACCTCGATCACATAA |
| Shewanella sediminis HAW-EB3 | Ssed_0094 | -96 | 4.5 | AAATATTACCTCGATCACATAA |
| Shewanella woodyi ATCC 51908 | Swoo_0057 | -157 | 4.2 | AAATATGATGTTTTGCACTTTA |
| -96 | 4.4 | AAATATTACCTCGATCACAATA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0057 | -157 | 4.2 | AAATATGATGTTTTGCACTTTA |
| -96 | 4.4 | AAATATTACCTCGATCACAATA | ||
|
Position: -83
Score: 4.6 Sequence: AAACATGACCTAGATCACACTA
Locus tag: Shal_4284
|
||||
| Shal_4284 | -83 | 4.6 | AAACATGACCTAGATCACACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiA-2 | ||||
| Ortholog function: Ribosome hibernation protein YfiA | ||||
| Shewanella oneidensis MR-1 | SO3422 | -78 | 4.7 | AAGTGTGATTTAACTCTCGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2740 | -77 | 5.1 | TTTTGTGATTTAGATCTCGTTT |
| Shewanella sp W3-18-1 | Sputw3181_1272 | -77 | 5.1 | TTTTGTGATTTAGATCTCGTTT |
| Shewanella sp ANA-3 | Shewana3_1133 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella sp MR-4 | Shewmr4_1132 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella sp MR-7 | Shewmr7_1203 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella baltica OS155 | Sbal_1221 | -77 | 5.2 | AAATGTGATCTAGATCTCGTTT |
| Shewanella denitrificans OS217 | Sden_2746 | -77 | 4.8 | AAGTGTGACTTTGATCACGCTT |
| -38 | 4.1 | TAATCTGAAGTTAAGCACATAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2912 | -77 | 5 | AAGTGTGATGCAGATCACTATT |
| Shewanella amazonensis SB2B | Sama_0899 | -78 | 4.3 | AAACGTGATTTTACTCACGACT |
| Shewanella loihica PV-4 | Shew_1073 | -76 | 4.6 | AAAGTTGATCTAGATCACGTTT |
| Shewanella pealeana ATCC 700345 | Spea_1060 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella halifaxensis HAW-EB4 | Shal_4284 | -83 | 4.6 | AAACATGACCTAGATCACACTA |
| -58 | 3.8 | TAATGTGATTGGACTATTGTAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1108 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella piezotolerans WP3 | swp_3757 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella sediminis HAW-EB3 | Ssed_1169 | -222 | 3.8 | TTTTGAGAGGCAAATAAAAAAA |
| -76 | 4.6 | AAACGTGATTTAGATCACGACT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1264 | -76 | 4.5 | AAACGTGATCAAGATCACGACT |
|
Position: -46
Score: 3.8 Sequence: TATTGCGACTCAATTAATACAT
Locus tag: Shal_4287
|
||||
| Shal_4287 | -46 | 3.8 | TATTGCGACTCAATTAATACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4743 | ||||
| Ortholog function: ferrichrome-iron receptor | ||||
| Shewanella oneidensis MR-1 | SO4743 | -164 | 4.9 | AATTTTGATCTGTATCACGCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3953 | -116 | 4.7 | TAATTTGATCGGTATCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_4050 | -116 | 4.7 | TAATTTGATCGGTATCACACTC |
| Shewanella sp MR-4 | Shewmr4_3922 | -116 | 4.3 | AAACTTGATCTAAGTCACGCTA |
| Shewanella sp MR-7 | Shewmr7_4014 | -116 | 4.3 | AAACTTGATCTAAGTCACGCTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_4042 | -116 | 4.7 | ATTTTTGATATATATCACAGTC |
| Shewanella halifaxensis HAW-EB4 | Shal_4287 | -46 | 3.8 | TATTGCGACTCAATTAATACAT |
| Shewanella piezotolerans WP3 | swp_5150 | -117 | 4.3 | TGTTGTGCGCGAGTTCACATTG |
| Shewanella woodyi ATCC 51908 | Swoo_4894 | -91 | 3.8 | CTTTTTGATCTTTATCTAGTTT |