Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Shewanella halifaxensis HAW-EB4

Type Regulator Effector Pathway Genes Sites
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 21 49
TF AzrR Paraquat Superoxide stress response 2 2
TF BetI Betaine Osmotic stress response 1 1
TF BirA Biotin Biotin biosynthesis 2 2
TF CalR Utilization of aromatic compounds 1 1
TF Crp Cyclic 3',5'-AMP Carbon catabolism 224 438
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF DeoR Nucleoside utilization 1 1
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 9 9
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 5 5
TF Fnr Oxygen Anaerobic metabolism 37 45
TF Fur Iron ion, (Fe2+) Iron homeostasis 25 31
TF GcvA Glycine Glycine metabolism 7 10
TF GlmR Glucosamine-6-phosphate Lipopolysaccharide biosynthesis 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 19 31
TF HmgQ 4-hydroxyphenylpyruvate Tyrosine degradation 2 2
TF HutC cis-Urocanic acid Histidine utilization 2 2
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 6 8
TF IlvY Acetohydroxybutyrate; 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 4 6
TF LexA DNA damage SOS response 12 15
TF LiuR Branched-chain amino acid degradation 6 7
TF LldR L-lactate Lactate utilization 1 1
TF MetR Homocysteine Methionine biosynthesis 3 4
TF NagR N-acetylglucosamine N-acetylglucosamine utilization 6 6
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 16 22
TF NhaR Potassium ion Osmotic stress response 2 3
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 3 3
TF NorR Nitric oxide Nitrosative stress response 3 6
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NsrR Nitric oxide Nitrosative stress response 2 2
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 5
TF PdhR Pyruvate Pyruvate metabolism 5 5
TF PflR Formate Formate metabolism 3 3
TF PrpR 2-methylcitrate Methylcitrate utilization 1 3
TF PsrA Oleate Fatty acid degradation 15 17
TF PUR Purine metabolism 5 5
TF RbsR Ribose Ribose utilization 1 1
TF SdaR Glycerate Glycerate utilization 1 1
TF SO1415 3 3
TF SO2282 Amino acid efflux 2 2
TF SO3277 Multidrug resistance 2 4
TF SO4326 Multidrug resistance 1 1
TF SO4705 2 2
TF TrpR Tryptophan Aromatic amino acid metabolism 2 2
TF TyrR Tyrosine; Phenylalanine Amino acid utilization 17 22
TF XltR Xylitol Xylitol utilization 2 2
TF ZntR Zinc ion, (Zn2+); Cadmium, ion (Cd2+) Zinc resistance; Cadmium resistance 1 1
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