Propagation of NikR regulog to Shewanella halifaxensis HAW-EB4
| Source regulog: | NikR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | NikR |
| Regulation mode: | repressor |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella halifaxensis HAW-EB4 |
| Orthologous TF(s) | Shal_3729 |
| Regulated genes | 3 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -138
Score: 7.1 Sequence: GTAATACTTTTTTAAAATTCGTCATAC
Locus tag: Shal_1183
|
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| Shal_1183 | -138 | 7.1 | GTAATACTTTTTTAAAATTCGTCATAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp_Ni | ||||
| Ortholog function: Predicted outer membrane nickel transporter, TonB-dependent family | ||||
| Shewanella pealeana ATCC 700345 | Spea_1138 | -96 | 7.1 | GTAATACTTTTTTAAAATTCGTCATAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1183 | -138 | 7.1 | GTAATACTTTTTTAAAATTCGTCATAC |
|
Position: -49
Score: 6.8 Sequence: GTGTGACGATTCGAAAAATAGTATTAC
Locus tag: Shal_3728
|
||||
| Shal_3728 | -49 | 6.8 | GTGTGACGATTCGAAAAATAGTATTAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nikA | ||||
| Ortholog function: Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3) | ||||
| Shewanella pealeana ATCC 700345 | Spea_3644 | -49 | 7.1 | GTGTGACGATTCTAAAAATAGTATTAC |
| Shewanella halifaxensis HAW-EB4 | Shal_3728 | -49 | 6.8 | GTGTGACGATTCGAAAAATAGTATTAC |
| Shewanella sediminis HAW-EB3 | Ssed_1675 | -56 | 7 | GTATTACGAATCTAAAAGTAGTATTAC |
|
Position: -164
Score: 6.8 Sequence: GTAATACTATTTTTCGAATCGTCACAC
Locus tag: Shal_3729
|
||||
| Shal_3729 | -164 | 6.8 | GTAATACTATTTTTCGAATCGTCACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nikR | ||||
| Ortholog function: Nickel responsive regulator NikR, CopG family | ||||
| Shewanella pealeana ATCC 700345 | Spea_3645 | -164 | 7.1 | GTAATACTATTTTTAGAATCGTCACAC |
| Shewanella halifaxensis HAW-EB4 | Shal_3729 | -164 | 6.8 | GTAATACTATTTTTCGAATCGTCACAC |
| Shewanella sediminis HAW-EB3 | Ssed_1674 | -167 | 7 | GTAATACTACTTTTAGATTCGTAATAC |