Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NikR regulog to Shewanella halifaxensis HAW-EB4

Reference regulog properties
Source regulog: NikR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella halifaxensis HAW-EB4
Orthologous TF(s) Shal_3729
Regulated genes 3
Built upon 8 sites [see more]
Predicted regulatory interactions in Shewanella halifaxensis HAW-EB4
Locus tag Position Score Sequence
Position: -138
Score: 7.1
Sequence: GTAATACTTTTTTAAAATTCGTCATAC
Locus tag: Shal_1183
Shal_1183 -138 7.1 GTAATACTTTTTTAAAATTCGTCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp_Ni
Ortholog function: Predicted outer membrane nickel transporter, TonB-dependent family
Shewanella pealeana ATCC 700345 Spea_1138 -96 7.1 GTAATACTTTTTTAAAATTCGTCATAC
Shewanella halifaxensis HAW-EB4 Shal_1183 -138 7.1 GTAATACTTTTTTAAAATTCGTCATAC
Position: -49
Score: 6.8
Sequence: GTGTGACGATTCGAAAAATAGTATTAC
Locus tag: Shal_3728
Shal_3728 -49 6.8 GTGTGACGATTCGAAAAATAGTATTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nikA
Ortholog function: Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3)
Shewanella pealeana ATCC 700345 Spea_3644 -49 7.1 GTGTGACGATTCTAAAAATAGTATTAC
Shewanella halifaxensis HAW-EB4 Shal_3728 -49 6.8 GTGTGACGATTCGAAAAATAGTATTAC
Shewanella sediminis HAW-EB3 Ssed_1675 -56 7 GTATTACGAATCTAAAAGTAGTATTAC
Position: -164
Score: 6.8
Sequence: GTAATACTATTTTTCGAATCGTCACAC
Locus tag: Shal_3729
Shal_3729 -164 6.8 GTAATACTATTTTTCGAATCGTCACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nikR
Ortholog function: Nickel responsive regulator NikR, CopG family
Shewanella pealeana ATCC 700345 Spea_3645 -164 7.1 GTAATACTATTTTTAGAATCGTCACAC
Shewanella halifaxensis HAW-EB4 Shal_3729 -164 6.8 GTAATACTATTTTTCGAATCGTCACAC
Shewanella sediminis HAW-EB3 Ssed_1674 -167 7 GTAATACTACTTTTAGATTCGTAATAC
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