Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NagR regulog to Shewanella halifaxensis HAW-EB4

Reference regulog properties
Source regulog: NagR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella halifaxensis HAW-EB4
Orthologous TF(s) Shal_1144
Regulated genes 6
Built upon 105 sites [see more]
Predicted regulatory interactions in Shewanella halifaxensis HAW-EB4
Locus tag Position Score Sequence
Position: -84
Score: 6.4
Sequence: AATGACAGCGTTGTCATT
Locus tag: Shal_0813
Shal_0813 -84 6.4 AATGACAGCGTTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagB
Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Shewanella loihica PV-4 Shew_0815 -119 6.4 AATGACAACGCTGTCATT
Shewanella pealeana ATCC 700345 Spea_0760 -182 6.4 AATGACAGCGTTGTCATT
Shewanella halifaxensis HAW-EB4 Shal_0813 -84 6.4 AATGACAGCGTTGTCATT
Shewanella piezotolerans WP3 swp_4289 -91 6.4 AATGACAGCGTTGTCATT
Shewanella sediminis HAW-EB3 Ssed_0844 -84 6.4 AATGACAGCGTTGTCATT
Shewanella woodyi ATCC 51908 Swoo_0943 -190 6.4 AATGACAGCGTTGTCATT
Position: -78
Score: 6.2
Sequence: CATGACAGCGTTGTCATT
Locus tag: Shal_1145
Shal_1145 -78 6.2 CATGACAGCGTTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp_nag
Ortholog function: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Shewanella oneidensis MR-1 SO_3514 -74 6.2 CATGACAGCGTTGTCATT
Shewanella putrefaciens CN-32 Sputcn32_1074 -75 6.2 CATGACAGCGTTGTCATT
Shewanella sp W3-18-1 Sputw3181_3091 -75 6.2 CATGACAGCGTTGTCATT
Shewanella sp MR-7 Shewmr7_3024 -348 5.1 GCCGACAGCGTTGTCAGC
-74 6.2 CATGACAGCGTTGTCATT
Shewanella loihica PV-4 Shew_1112 -76 6.2 CATGACAGCGTTGTCATT
Shewanella halifaxensis HAW-EB4 Shal_1145 -78 6.2 CATGACAGCGTTGTCATT
Position: -149
Score: 6.1
Sequence: ATTGACAACGTTGTCACT
Locus tag: Shal_1147
Shal_1147 -149 6.1 ATTGACAACGTTGTCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sapC
Ortholog function: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
Shewanella oneidensis MR-1 SO_3512 -74 6.2 CATGACAGCGTTGTCATT
Shewanella sp MR-7 Shewmr7_3022 -348 5.1 GCCGACAGCGTTGTCAGC
-74 6.2 CATGACAGCGTTGTCATT
Shewanella loihica PV-4 Shew_1114 -374 5.7 TATGACAACGCTGTCAAC
Shewanella pealeana ATCC 700345 Spea_1099 -117 6.1 ATTGACAACGTTGTCACT
Shewanella halifaxensis HAW-EB4 Shal_1147 -149 6.1 ATTGACAACGTTGTCACT
Shewanella piezotolerans WP3 swp_3709 -129 5.4 AATGACAACGCTGTCTAA
Shewanella sediminis HAW-EB3 Ssed_1210 -293 6.4 GATGACAACGCTGTCATT
-139 5.2 TATGACAACGCTGTCAAA
Shewanella woodyi ATCC 51908 Swoo_1307 -92 5.7 TATGACAACGCTGTCAAT
Position: -344
Score: 6.1
Sequence: CATGACAGCGTTGTCATC
Locus tag: Shal_1148
Shal_1148 -344 6.1 CATGACAGCGTTGTCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hex
Ortholog function: Beta-hexosaminidase (EC 3.2.1.52)
Shewanella oneidensis MR-1 SO_3509 -437 5 ACTGACAGCGTTGTTATA
-290 6.4 AATGACAACGCTGTCATC
Shewanella putrefaciens CN-32 Sputcn32_1075 -75 6.2 CATGACAGCGTTGTCATT
Shewanella sp W3-18-1 Sputw3181_3090 -75 6.2 CATGACAGCGTTGTCATT
Shewanella sp ANA-3 Shewana3_3115 -294 6.4 AATGACAACGCTGTCATC
Shewanella sp MR-4 Shewmr4_2936 -294 6.4 AATGACAACGCTGTCATC
Shewanella sp MR-7 Shewmr7_3018 -294 6.4 AATGACAACGCTGTCATC
Shewanella amazonensis SB2B Sama_0943 -282 6.4 AATGACAGCGTTGTCATT
Shewanella pealeana ATCC 700345 Spea_1100 -334 6.4 AATGACAGCGTTGTCATC
Shewanella halifaxensis HAW-EB4 Shal_1148 -344 6.1 CATGACAGCGTTGTCATC
Shewanella piezotolerans WP3 swp_3705 -277 5.9 TATGACAGCGTTGTCATC
Shewanella sediminis HAW-EB3 Ssed_1211 -572 6.4 AATGACAGCGTTGTCATC
Shewanella woodyi ATCC 51908 Swoo_1311 -311 6.4 AATGACAGCGTTGTCATC
Position: -124
Score: 6.4
Sequence: AATGACAACGCTGTCATT
Locus tag: Shal_1149
Shal_1149 -124 6.4 AATGACAACGCTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagK
Ortholog function: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
Shewanella oneidensis MR-1 SO_3507 -115 6.4 AATGACAACGCTGTCATT
Shewanella putrefaciens CN-32 Sputcn32_1076 -90 6.4 AATGACAACGCTGTCATC
Shewanella sp W3-18-1 Sputw3181_3089 -90 6.4 AATGACAACGCTGTCATC
Shewanella sp ANA-3 Shewana3_3114 -114 6.4 AATGACAACGCTGTCATT
Shewanella sp MR-4 Shewmr4_2935 -114 6.4 AATGACAACGCTGTCATT
Shewanella sp MR-7 Shewmr7_3017 -114 6.4 AATGACAACGCTGTCATT
Shewanella baltica OS155 Sbal_1084 -113 6.4 AATGACAACGCTGTCATT
Shewanella denitrificans OS217 Sden_2706 -101 6.4 AATGACAACGCTGTCATT
Shewanella amazonensis SB2B Sama_0944 -105 6.4 AATGACAACGCTGTCATT
Shewanella loihica PV-4 Shew_1116 -106 6.4 AATGACAGCGTTGTCATT
Shewanella pealeana ATCC 700345 Spea_1101 -123 6.4 AATGACAACGCTGTCATT
Shewanella halifaxensis HAW-EB4 Shal_1149 -124 6.4 AATGACAACGCTGTCATT
Shewanella piezotolerans WP3 swp_3703 -106 6.4 AATGACAACGCTGTCATT
Shewanella sediminis HAW-EB3 Ssed_1212 -106 6.4 AATGACAACGCTGTCATT
Shewanella woodyi ATCC 51908 Swoo_1312 -108 6.4 AATGACAACGCTGTCATT
Position: -199
Score: 6.1
Sequence: AATGACAGCGTTGTCTTT
Locus tag: Shal_1152
Shal_1152 -199 6.1 AATGACAGCGTTGTCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagP
Ortholog function: N-acetylglucosamine transporter, NagP
Shewanella oneidensis MR-1 SO_3503 -175 6.1 AATGACAGCGTTGTCTTT
Shewanella putrefaciens CN-32 Sputcn32_1080 -179 6.1 AATGACAGCGTTGTCTTT
Shewanella sp W3-18-1 Sputw3181_3084 -179 6.1 AATGACAGCGTTGTCTTT
Shewanella sp ANA-3 Shewana3_3110 -177 6.1 AATGACAGCGTTGTCTTT
Shewanella sp MR-4 Shewmr4_2931 -178 6.1 AATGACAGCGTTGTCTTT
Shewanella sp MR-7 Shewmr7_3013 -178 6.1 AATGACAGCGTTGTCTTT
Shewanella baltica OS155 Sbal_1088 -179 6.1 AATGACAGCGTTGTCTTT
Shewanella denitrificans OS217 Sden_2702 -138 5.6 AATGACAGCGTTGTCTTA
Shewanella amazonensis SB2B Sama_0948 -167 6.1 AATGACAGCGTTGTCTTT
Shewanella loihica PV-4 Shew_1119 -186 6.1 AATGACAGCGTTGTCTTT
Shewanella pealeana ATCC 700345 Spea_1104 -198 6.1 AATGACAGCGTTGTCTTT
Shewanella halifaxensis HAW-EB4 Shal_1152 -199 6.1 AATGACAGCGTTGTCTTT
Shewanella piezotolerans WP3 swp_3698 -177 6.1 AATGACAGCGTTGTCTTT
Shewanella sediminis HAW-EB3 Ssed_1215 -168 6.1 AATGACAGCGTTGTCTTT
Shewanella woodyi ATCC 51908 Swoo_1315 -172 6.1 AATGACAGCGTTGTCTTT
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