Propagation of PdhR regulog to Shewanella halifaxensis HAW-EB4
Source regulog: | PdhR - Shewanellaceae |
Regulator type: | Transcription factor |
Regulator family: | GntR/Others |
Regulation mode: | repressor |
Biological process: | Pyruvate metabolism |
Effector: | Pyruvate |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Shewanella halifaxensis HAW-EB4 |
Orthologous TF(s) | Shal_0475 |
Regulated genes | 5 |
Locus tag | Position | Score | Sequence | |
---|---|---|---|---|
Position: -39
Score: 6.4 Sequence: AATTGGTAAGACCAATT
Locus tag: Shal_0475
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Shal_0475 | -39 | 6.4 | AATTGGTAAGACCAATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pdhR | ||||
Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family | ||||
Shewanella oneidensis MR-1 | SO_0423 | -175 | 4.5 | TAATGGTCTGACCCCTT |
-38 | 6.4 | AATTGGTAAGACCAATT | ||
Shewanella putrefaciens CN-32 | Sputcn32_3418 | -194 | 4.4 | AAATGGTCTGACCCCAT |
-38 | 6.4 | AATTGGTAAGACCAATT | ||
Shewanella sp W3-18-1 | Sputw3181_0525 | -194 | 4.4 | AAATGGTCTGACCCCAT |
-38 | 6.4 | AATTGGTAAGACCAATT | ||
Shewanella sp ANA-3 | Shewana3_0425 | -38 | 6.4 | AATTGGTAAGACCAATT |
Shewanella sp MR-4 | Shewmr4_0427 | -175 | 4.4 | AAATGGTCTGACCCCAT |
-38 | 6.4 | AATTGGTAAGACCAATT | ||
Shewanella sp MR-7 | Shewmr7_3600 | -175 | 4.4 | AAATGGTCTGACCCCAT |
-38 | 6.4 | AATTGGTAAGACCAATT | ||
Shewanella baltica OS155 | Sbal_3914 | -175 | 4.4 | AAATGGTCTGACCCCAT |
-38 | 6.4 | AATTGGTAAGACCAATT | ||
Shewanella denitrificans OS217 | Sden_3384 | -185 | 4.8 | AAATGGTCTGACCCCTT |
-38 | 6.4 | AATTGGTAAGACCAATT | ||
Shewanella frigidimarina NCIMB 400 | Sfri_3778 | -186 | 4.8 | AAATGGTCTGACCCCTT |
-49 | 6.4 | AATTGGTAAGACCAATT | ||
Shewanella amazonensis SB2B | Sama_0374 | -152 | 4.8 | AATTGGTCTGACCCCAT |
-39 | 6.4 | AATTGGTAAGACCAATT | ||
Shewanella loihica PV-4 | Shew_3432 | -39 | 6.4 | AATTGGTAAGACCAATT |
Shewanella pealeana ATCC 700345 | Spea_0418 | -158 | 4.2 | CATTGGTCAGACCCCAT |
-39 | 6.4 | AATTGGTAAGACCAATT | ||
Shewanella halifaxensis HAW-EB4 | Shal_0475 | -157 | 4.4 | CATTGGTCTGACCCCTA |
-39 | 6.4 | AATTGGTAAGACCAATT | ||
Shewanella piezotolerans WP3 | swp_4753 | -158 | 4.2 | CATTGGTCTGACCCCAT |
-39 | 6.4 | AATTGGTAAGACCAATT | ||
Shewanella sediminis HAW-EB3 | Ssed_0430 | -158 | 4.5 | TAATGGTCAGACCCCTT |
-39 | 6.4 | AATTGGTAAGACCAATT | ||
Shewanella woodyi ATCC 51908 | Swoo_0318 | -159 | 4.3 | TAATGGTCTGACCGCTA |
-39 | 6.4 | AATTGGTAAGACCAATT | ||
Position: -142
Score: 6 Sequence: GATTGGTATTACCAATT
Locus tag: Shal_0628
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Shal_0628 | -142 | 6 | GATTGGTATTACCAATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: deaD | ||||
Ortholog function: Cold-shock DEAD-box protein A | ||||
Shewanella pealeana ATCC 700345 | Spea_0566 | -142 | 6.3 | AATTGGTATTACCAATT |
Shewanella halifaxensis HAW-EB4 | Shal_0628 | -142 | 6 | GATTGGTATTACCAATT |
Shewanella piezotolerans WP3 | swp_4551 | -141 | 5.9 | AAATGGTAATACCAATT |
Shewanella sediminis HAW-EB3 | Ssed_4029 | -141 | 6.3 | AATTGGTAATACCAATT |
Shewanella woodyi ATCC 51908 | Swoo_0636 | -143 | 6.3 | AATTGGTAATACCAATT |
Position: -196
Score: 4.7 Sequence: TTATGGTACGACCAATT
Locus tag: Shal_1235
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Shal_1235 | -196 | 4.7 | TTATGGTACGACCAATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: oadG | ||||
Ortholog function: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) | ||||
Shewanella putrefaciens CN-32 | Sputcn32_1029 | -246 | 5.6 | ACATGGTAAGACCAATT |
Shewanella sp W3-18-1 | Sputw3181_3136 | -246 | 5.6 | ACATGGTAAGACCAATT |
Shewanella sp ANA-3 | Shewana3_3166 | -111 | 6.4 | AATTGGTCTTACCAATT |
Shewanella sp MR-4 | Shewmr4_2987 | -79 | 6.4 | AATTGGTCTTACCAATT |
Shewanella sp MR-7 | Shewmr7_3069 | -110 | 6.4 | AATTGGTCTTACCAATT |
Shewanella baltica OS155 | Sbal_1024 | -251 | 6.1 | TATTGGTAAGACCAATT |
Shewanella frigidimarina NCIMB 400 | Sfri_1065 | -299 | 5.7 | TTTTGGTAAGACCAATT |
Shewanella amazonensis SB2B | Sama_1051 | -169 | 6.1 | TATTGGTAAGACCAATT |
Shewanella loihica PV-4 | Shew_1219 | -202 | 6 | ATTTGGTAAGACCAATT |
Shewanella pealeana ATCC 700345 | Spea_1198 | -195 | 5.2 | TTATGGTATGACCAATT |
Shewanella halifaxensis HAW-EB4 | Shal_1235 | -196 | 4.7 | TTATGGTACGACCAATT |
Shewanella piezotolerans WP3 | swp_1378 | -258 | 6.1 | TATTGGTATGACCAATT |
Shewanella sediminis HAW-EB3 | Ssed_1320 | -148 | 6.1 | TATTGGTATGACCAATT |
Shewanella woodyi ATCC 51908 | Swoo_3337 | -243 | 5.7 | TTTTGGTATGACCAATT |
Position: -216
Score: 6.4 Sequence: AATTGGTCTTACCAATT
Locus tag: Shal_2591
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Shal_2591 | -216 | 6.4 | AATTGGTCTTACCAATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pflX | ||||
Ortholog function: pyruvate formate lyase-related hypothetical transporter | ||||
Shewanella putrefaciens CN-32 | Sputcn32_2377 | -202 | 6.4 | AATTGGTCAGACCAATT |
Shewanella sp W3-18-1 | Sputw3181_1632 | -202 | 6.4 | AATTGGTCAGACCAATT |
Shewanella denitrificans OS217 | Sden_2405 | -180 | 6.1 | AATTGGTCTTACCAATA |
Shewanella frigidimarina NCIMB 400 | Sfri_2472 | -203 | 5.8 | AATTGGTCTTACCAAGA |
Shewanella amazonensis SB2B | Sama_1499 | -180 | 6.4 | AATTGGTATGACCAATT |
Shewanella loihica PV-4 | Shew_2389 | -205 | 6.4 | AATTGGTCAGACCAATT |
Shewanella pealeana ATCC 700345 | Spea_1673 | -215 | 6.4 | AATTGGTCTTACCAATT |
Shewanella halifaxensis HAW-EB4 | Shal_2591 | -216 | 6.4 | AATTGGTCTTACCAATT |
Shewanella piezotolerans WP3 | swp_1953 | -215 | 6.4 | AATTGGTCTTACCAATT |
Shewanella sediminis HAW-EB3 | Ssed_1709 | -215 | 6.4 | AATTGGTCTTACCAATT |
Shewanella woodyi ATCC 51908 | Swoo_2882 | -214 | 6.4 | AATTGGTCTTACCAATT |
Position: -238
Score: 6.4 Sequence: AATTGGTCTTACCAATT
Locus tag: Shal_2592
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Shal_2592 | -238 | 6.4 | AATTGGTCTTACCAATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pflB | ||||
Ortholog function: Pyruvate formate-lyase (EC 2.3.1.54) | ||||
Shewanella oneidensis MR-1 | SO_2912 | -247 | 6.4 | AATTGGTCTTACCAATT |
Shewanella putrefaciens CN-32 | Sputcn32_2378 | -256 | 6.4 | AATTGGTCTTACCAATT |
Shewanella sp W3-18-1 | Sputw3181_1631 | -256 | 6.4 | AATTGGTCTTACCAATT |
Shewanella sp ANA-3 | Shewana3_1555 | -246 | 6.4 | AATTGGTCTTACCAATT |
Shewanella sp MR-4 | Shewmr4_1494 | -246 | 6.4 | AATTGGTCTTACCAATT |
Shewanella sp MR-7 | Shewmr7_1561 | -246 | 6.4 | AATTGGTCTTACCAATT |
Shewanella baltica OS155 | Sbal_2671 | -245 | 6.4 | AATTGGTCTTACCAATT |
Shewanella denitrificans OS217 | Sden_2406 | -165 | 6.1 | AATTGGTCTTACCAATA |
Shewanella frigidimarina NCIMB 400 | Sfri_2473 | -216 | 5.9 | AATTGGTCTTACCATTT |
Shewanella amazonensis SB2B | Sama_1498 | -163 | 6.4 | AATTGGTCTTACCAATT |
Shewanella loihica PV-4 | Shew_2390 | -242 | 6.4 | AATTGGTCTTACCAATT |
Shewanella pealeana ATCC 700345 | Spea_1672 | -229 | 6.4 | AATTGGTCTTACCAATT |
Shewanella halifaxensis HAW-EB4 | Shal_2592 | -238 | 6.4 | AATTGGTCTTACCAATT |
Shewanella piezotolerans WP3 | swp_1952 | -222 | 6.4 | AATTGGTCTTACCAATT |
Shewanella sediminis HAW-EB3 | Ssed_1708 | -240 | 6.4 | AATTGGTCTTACCAATT |
Shewanella woodyi ATCC 51908 | Swoo_2883 | -235 | 6.4 | AATTGGTCTTACCAATT |