Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TyrR regulog to Shewanella halifaxensis HAW-EB4

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella halifaxensis HAW-EB4
Orthologous TF(s) Shal_1533
Regulated genes 17
Built upon 312 sites [see more]
Predicted regulatory interactions in Shewanella halifaxensis HAW-EB4
Locus tag Position Score Sequence
Position: -94
Score: 5.1
Sequence: GTGTAAACTAATCATTACAC
Locus tag: Shal_0859
Shal_0859 -94 5.1 GTGTAAACTAATCATTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: brnQ
Ortholog function: Branched-chain amino acid transport system carrier protein
Shewanella oneidensis MR-1 SO_0949 -121 5 GTGTAAACATAGGTTTGCAC
Shewanella putrefaciens CN-32 Sputcn32_0889 -107 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp W3-18-1 Sputw3181_3284 -107 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp ANA-3 Shewana3_3332 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp MR-4 Shewmr4_0794 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp MR-7 Shewmr7_3229 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella baltica OS155 Sbal_0842 -107 5.1 GTGTAAACAAAGATTTGCAC
Shewanella denitrificans OS217 Sden_0746 -229 4.1 GAGTATCGAAAAGTTTACAC
Shewanella frigidimarina NCIMB 400 Sfri_0662 -122 4.8 GTGTATTTTTAACTTTACAA
Shewanella amazonensis SB2B Sama_2740 -109 4.5 CTGTAATTCTGGCGTTACAC
Shewanella loihica PV-4 Shew_0769 -102 4.6 GTGTAATAAGAAGTTTACAC
Shewanella pealeana ATCC 700345 Spea_0804 -90 5.2 GTGTAAAGTAATAATTACAC
Shewanella halifaxensis HAW-EB4 Shal_0859 -94 5.1 GTGTAAACTAATCATTACAC
Shewanella piezotolerans WP3 swp_4229 -153 5 GTGTAAACCAAATATTACAC
Shewanella sediminis HAW-EB3 Ssed_0892 -106 4.6 GTGTAATTGAAAGTTTACAC
Shewanella woodyi ATCC 51908 Swoo_0894 -67 5.1 GTGTAATCTAAAGTTTACAC
Position: -199
Score: 3.4
Sequence: TTGTAAATCAACATATGCTG
Locus tag: Shal_1352
Shal_1352 -199 3.4 TTGTAAATCAACATATGCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: Malate synthase (EC 2.3.3.9)
Shewanella oneidensis MR-1 SO_1483 -372 3.7 GTGTAATCATTGTTTTTCGA
Shewanella putrefaciens CN-32 Sputcn32_1238 -304 4.7 GTGTAATTATAAATTTACGT
Shewanella sp W3-18-1 Sputw3181_2866 -303 4.5 GTGTAATTATAAATTTACTT
Shewanella sp ANA-3 Shewana3_2943 -372 4.3 CTGTATATTTAAATTTTCAA
Shewanella sp MR-4 Shewmr4_2767 -372 4.3 CTGTATAGTTAAATTTTCAA
Shewanella sp MR-7 Shewmr7_2845 -372 3.8 CTGTACATTTAAATTTTCAG
Shewanella baltica OS155 Sbal_1316 -380 3.6 CTGTATTAATATATTTACTG
Shewanella denitrificans OS217 Sden_1245 -324 4 TTGTAAGTTATTATTTACTG
Shewanella frigidimarina NCIMB 400 Sfri_1101 -458 4.4 tgGTAAAGaaAtATTTACAg
Shewanella amazonensis SB2B Sama_2381 -450 4.1 TTGTAAATTAAATATTAAAT
-364 3.7 GTGTATTAAAAATCTTACAG
Shewanella loihica PV-4 Shew_1275 -393 3.4 CTGTATCGACAAAATTACTA
Shewanella pealeana ATCC 700345 Spea_1290 -415 3.9 GTGGCAATAATTGTTAACGA
Shewanella halifaxensis HAW-EB4 Shal_1352 -458 4.1 aTGTAAAagTAtATTgACgC
Shewanella piezotolerans WP3 swp_1433 -412 4.2 CTGTATTTATAATATTACAC
Shewanella sediminis HAW-EB3 Ssed_1414 -371 4.2 CTGTAAGTTTATTTTTACGC
Shewanella woodyi ATCC 51908 Swoo_1528 -401 3.9 GTGTATCATTAAGTTTACTT
-341 3.6 TTGGTAAATTTGTCTGACAA
Position: -133
Score: 4.3
Sequence: GTGTAACAACTTCGTTACAC
Locus tag: Shal_1531
Shal_1531 -133 4.3 GTGTAACAACTTCGTTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1 SO_1666 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella putrefaciens CN-32 Sputcn32_1386 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp W3-18-1 Sputw3181_2715 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp ANA-3 Shewana3_2781 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp MR-4 Shewmr4_2607 -122 4.4 TTGTAATATTTACTTTACGT
Shewanella sp MR-7 Shewmr7_2674 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella baltica OS155 Sbal_1484 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella denitrificans OS217 Sden_2595 -127 4.4 TTGTATGCTTAAGTTTACAA
Shewanella frigidimarina NCIMB 400 Sfri_1328 -121 4.1 TTGTATTTATTTGTTTACGA
Shewanella amazonensis SB2B Sama_2222 -123 4.3 TTGTAATAAAAGCTTTACGA
Shewanella loihica PV-4 Shew_1435 -87 4.7 ATGTAAATTTGAGGTTACAT
Shewanella pealeana ATCC 700345 Spea_1448 -239 4.3 GTGTCAATTTCTATATACGC
-173 4.8 GTGTAACATTAGCATTACAC
Shewanella halifaxensis HAW-EB4 Shal_1531 -133 4.3 GTGTAACAACTTCGTTACAC
Shewanella piezotolerans WP3 swp_1650 -188 4.6 CTGTAAATTATGGCTTACAA
-123 4.5 ATGTAAACTTATGGTTACGC
Shewanella sediminis HAW-EB3 Ssed_2930 -188 3.7 TCGTCAATAAATGGTGACGA
-122 4.2 TTGTAAGCAAATTGTTACAC
Shewanella woodyi ATCC 51908 Swoo_1715 -186 3.8 TTGGCAATAATTCAATACGA
-121 4.6 GTGTAACTTTTTGGTTACAA
Position: -159
Score: 4.1
Sequence: CTGTAAACAAGCCTTGCCAC
Locus tag: Shal_1533
Shal_1533 -159 4.1 CTGTAAACAAGCCTTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: tyrR
Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis
Shewanella oneidensis MR-1 SO_1669 -190 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_1388 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp W3-18-1 Sputw3181_2713 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp ANA-3 Shewana3_2779 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-4 Shewmr4_2605 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-7 Shewmr7_2672 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella baltica OS155 Sbal_1486 -196 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella denitrificans OS217 Sden_2593 -155 4.6 CTGTAAACAAGACTTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_1330 -92 4.7 CTGTAAACTTCACTTGCCAC
Shewanella amazonensis SB2B Sama_2220 -134 4.6 CTGTAAACAAGACTTGCCAC
Shewanella loihica PV-4 Shew_1437 -162 4.7 GTGTAAACAACTCTTGCCAC
Shewanella pealeana ATCC 700345 Spea_1450 -158 4.6 CTGTAAACAAGTCTTGCCAC
Shewanella halifaxensis HAW-EB4 Shal_1533 -159 4.1 CTGTAAACAAGCCTTGCCAC
Shewanella piezotolerans WP3 swp_1652 -309 4.6 cTGTAAAcaagtCTTgcCAC
Shewanella sediminis HAW-EB3 Ssed_2928 -151 4.6 CTGTAAACAAGACTTGCCAC
Shewanella woodyi ATCC 51908 Swoo_1717 -161 4.6 CTGTAAACAAGACTTGCCAC
Position: -183
Score: 4.7
Sequence: CTGTAAGTATAAGTTTACAA
Locus tag: Shal_1534
Shal_1534 -183 4.7 CTGTAAGTATAAGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgC
Ortholog function: Fumarylacetoacetase (EC 3.7.1.2)
Shewanella oneidensis MR-1 SO_1670 -323 3.8 ATGTAACAGTATCGTTCCAC
-239 4.3 ACGTAATGATTAGTTTACAG
Shewanella putrefaciens CN-32 Sputcn32_1389 -352 3.9 ATGTAACCGTATCGTTCCAC
-268 4 ACGTAATGATTAGTTTACGA
Shewanella sp W3-18-1 Sputw3181_2712 -352 3.9 ATGTAACCGTATCGTTCCAC
-268 4 ACGTAATGATTAGTTTACGA
Shewanella sp ANA-3 Shewana3_2778 -320 3.8 ATGTAACAGTATCGTTCCAC
-236 4.4 ACGTAATGATTAGTTTACAA
Shewanella sp MR-4 Shewmr4_2604 -319 3.8 ATGTAACAGTATCGTTCCAC
-235 4.4 ACGTAATGATTAGTTTACAA
Shewanella sp MR-7 Shewmr7_2671 -319 3.8 ATGTAACAGTATCGTTCCAC
-235 4.4 ACGTAATGATTAGTTTACAA
Shewanella baltica OS155 Sbal_1487 -358 3.8 ATGTAACAGTATCGTTCCAC
-274 4 ACGTAATGATTAGTTTACGA
Shewanella denitrificans OS217 Sden_2592 -228 4.1 ATGTAACGAATTAGTGCCAT
-146 4.1 TTGTACTGAAAAGTTTACAG
Shewanella frigidimarina NCIMB 400 Sfri_1331 -155 4.9 TTGTAACGAATAATTTACAA
Shewanella amazonensis SB2B Sama_2219 -234 4.3 GTGTAAAAAGAATTTGCCAG
-150 4.4 CTGTATTTAAAAGTTTACAA
Shewanella loihica PV-4 Shew_1438 -169 4.5 CTGTCATGAATTGTTTACAA
Shewanella pealeana ATCC 700345 Spea_1451 -197 4.8 GTGTATCTATAAGTTTACAC
Shewanella halifaxensis HAW-EB4 Shal_1534 -183 4.7 CTGTAAGTATAAGTTTACAA
Shewanella piezotolerans WP3 swp_1653 -179 4.8 CTGTAATTATATGTTTACAA
Shewanella sediminis HAW-EB3 Ssed_2927 -238 4 ATGTAAAAGCTTGTTGCCAC
-155 4 GTGTAACTGTTTATTTACGT
Shewanella woodyi ATCC 51908 Swoo_1718 -256 4.2 ATGTAACAAGAGATTGCCAC
-172 4.8 CTGTAATTATTTATTTACAA
Position: -157
Score: 4.9
Sequence: GTGGAAAGCAAAATTGCCAG
Locus tag: Shal_1711
Shal_1711 -157 4.9 GTGGAAAGCAAAATTGCCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: Leucine dehydrogenase (EC 1.4.1.9)
Shewanella oneidensis MR-1 SO_2638 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_2238 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp W3-18-1 Sputw3181_1771 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp ANA-3 Shewana3_1742 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-4 Shewmr4_1598 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-7 Shewmr7_1673 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella baltica OS155 Sbal_2483 -134 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella denitrificans OS217 Sden_1823 -140 4.9 GTGGCAAGCAAAATTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_2265 -178 5.2 GTGGCAAGCTAAATTTCCAC
Shewanella amazonensis SB2B Sama_2067 -147 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella loihica PV-4 Shew_1555 -157 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella pealeana ATCC 700345 Spea_2543 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella halifaxensis HAW-EB4 Shal_1711 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella piezotolerans WP3 swp_1857 -158 4.8 GTGGAAAGCAGAATTGCCAC
Shewanella sediminis HAW-EB3 Ssed_1877 -156 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella woodyi ATCC 51908 Swoo_2710 -157 5.1 GTGGAAAGCAAAATTGCCAC
Position: -161
Score: 4.8
Sequence: ATGTAAACCAATATATACAT
Locus tag: Shal_2234
Shal_2234 -161 4.8 ATGTAAACCAATATATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bkdA1
Ortholog function: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Shewanella oneidensis MR-1 SO_2339 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella putrefaciens CN-32 Sputcn32_1885 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella sp W3-18-1 Sputw3181_2123 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella sp ANA-3 Shewana3_2131 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella sp MR-4 Shewmr4_2028 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella sp MR-7 Shewmr7_1947 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella baltica OS155 Sbal_4508 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella denitrificans OS217 Sden_1786 -153 4.5 GCGTAAAGCAAATTATACAA
Shewanella frigidimarina NCIMB 400 Sfri_1935 -156 4.5 TCGTAAAGCAATATATACAT
Shewanella amazonensis SB2B Sama_1709 -150 4.3 CTGTAAAGCAATTAATACAT
Shewanella loihica PV-4 Shew_1925 -175 4.7 TTGTAAAGCTAGCGATACAT
Shewanella pealeana ATCC 700345 Spea_2246 -161 4.8 ATGTAAACCAATATATACAT
Shewanella halifaxensis HAW-EB4 Shal_2234 -161 4.8 ATGTAAACCAATATATACAT
Shewanella piezotolerans WP3 swp_2606 -162 4.8 ATGTAAACCAATATATACAT
Shewanella sediminis HAW-EB3 Ssed_2329 -172 4.4 TTGTAAAGCTAAAGATACGC
Shewanella woodyi ATCC 51908 Swoo_2278 -171 4 ATGTAAAGCTAAACATACGG
Position: -214
Score: 4.4
Sequence: TTGTAACATTCAGTTTACAA
Locus tag: Shal_2751
Shal_2751 -214 4.4 TTGTAACATTCAGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mdeA
Ortholog function: Methionine gamma-lyase (EC 4.4.1.11)
Shewanella oneidensis MR-1 SO_1812 -197 3.9 ATGTAACAACTTAGTTACAG
Shewanella putrefaciens CN-32 Sputcn32_1507 -210 4.1 ATGTAACAAGTTAATTACAC
Shewanella sp W3-18-1 Sputw3181_2594 -210 4.1 ATGTAACAAGTTAATTACAC
Shewanella sp ANA-3 Shewana3_2643 -208 3.9 ATGTAACAACTTAGTTACAG
Shewanella sp MR-4 Shewmr4_2477 -208 3.9 ATGTAACAACTTAGTTACAG
Shewanella sp MR-7 Shewmr7_2545 -208 3.9 ATGTAACAACTTAGTTACAG
Shewanella baltica OS155 Sbal_1622 -199 4.1 ATGTAACAAGTTAATTACAC
Shewanella denitrificans OS217 Sden_2521 -152 4.3 ATGTAACATAGTTTTTACAT
Shewanella frigidimarina NCIMB 400 Sfri_1369 -148 4.7 TTGTAAAATTGTTTTTACAT
Shewanella pealeana ATCC 700345 Spea_2664 -215 4 ACGTAACAATCACTTTACAA
Shewanella halifaxensis HAW-EB4 Shal_2751 -214 4.4 TTGTAACATTCAGTTTACAA
Shewanella piezotolerans WP3 swp_3243 -242 4.1 ACGTAACATATATTTTACAA
Position: -162
Score: 4
Sequence: GTGCAAAACTAAATCGCCAA
Locus tag: Shal_2876
Shal_2876 -162 4 GTGCAAAACTAAATCGCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdC
Ortholog function: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Shewanella oneidensis MR-1 SO_1679 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella putrefaciens CN-32 Sputcn32_1399 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp W3-18-1 Sputw3181_2702 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp ANA-3 Shewana3_2769 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-4 Shewmr4_2595 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-7 Shewmr7_2662 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella baltica OS155 Sbal_1497 -162 4.3 CTGTAAATCCTTACTGACAT
Shewanella denitrificans OS217 Sden_1941 -159 4.4 GTGTAAATCTTCAGTGACAA
Shewanella frigidimarina NCIMB 400 Sfri_1340 -140 4.1 CTGTAAATCTTCACTGACAA
Shewanella amazonensis SB2B Sama_1377 -195 3.8 GTGTCAATCTCAGTTCCCGC
-173 4.6 CTGTAAATCCAGAGTGACAA
Shewanella loihica PV-4 Shew_1669 -168 4.4 CTGTAAATTCAGCCTGACAA
Shewanella pealeana ATCC 700345 Spea_2781 -231 4.5 GTGTAAATTCTATGTGACAA
Shewanella halifaxensis HAW-EB4 Shal_2876 -231 4.4 GTGTAAATCCTTTGTGACAT
Shewanella piezotolerans WP3 swp_3385 -75 3.8 TTTTAAGTTGATGTTTACAC
Shewanella sediminis HAW-EB3 Ssed_1475 -185 4.5 CTGTAAATCCTGAGTGACAT
Shewanella woodyi ATCC 51908 Swoo_3200 -173 4.7 CTGTAAATCTTGAGTGACAT
Position: -231
Score: 4.4
Sequence: GTGTAAATCCTTTGTGACAT
Locus tag: Shal_2878
Shal_2878 -231 4.4 GTGTAAATCCTTTGTGACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shewanella oneidensis MR-1 SO_1677 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella putrefaciens CN-32 Sputcn32_1397 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp W3-18-1 Sputw3181_2704 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp ANA-3 Shewana3_2771 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-4 Shewmr4_2597 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-7 Shewmr7_2664 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella baltica OS155 Sbal_1495 -162 4.3 CTGTAAATCCTTACTGACAT
Shewanella denitrificans OS217 Sden_1943 -159 4.4 GTGTAAATCTTCAGTGACAA
Shewanella frigidimarina NCIMB 400 Sfri_1338 -140 4.1 CTGTAAATCTTCACTGACAA
Shewanella amazonensis SB2B Sama_1375 -195 3.8 GTGTCAATCTCAGTTCCCGC
-173 4.6 CTGTAAATCCAGAGTGACAA
Shewanella loihica PV-4 Shew_1667 -168 4.4 CTGTAAATTCAGCCTGACAA
Shewanella pealeana ATCC 700345 Spea_2783 -231 4.5 GTGTAAATTCTATGTGACAA
Shewanella halifaxensis HAW-EB4 Shal_2878 -231 4.4 GTGTAAATCCTTTGTGACAT
Shewanella piezotolerans WP3 swp_3387 -75 3.8 TTTTAAGTTGATGTTTACAC
Shewanella sediminis HAW-EB3 Ssed_1473 -185 4.5 CTGTAAATCCTGAGTGACAT
Shewanella woodyi ATCC 51908 Swoo_3202 -173 4.7 CTGTAAATCTTGAGTGACAT
Position: -110
Score: 4.4
Sequence: GTGGCAAGCGCGATTGACAT
Locus tag: Shal_2901
Shal_2901 -110 4.4 GTGGCAAGCGCGATTGACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuR
Ortholog function: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Shewanella oneidensis MR-1 SO_1898 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella putrefaciens CN-32 Sputcn32_1720 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella sp W3-18-1 Sputw3181_2305 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella sp ANA-3 Shewana3_1673 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella sp MR-4 Shewmr4_2321 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella sp MR-7 Shewmr7_2393 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella baltica OS155 Sbal_2827 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella denitrificans OS217 Sden_2244 -117 4.2 GTGGAAACAGAATTTAACAC
Shewanella frigidimarina NCIMB 400 Sfri_2726 -117 4.7 GTGGCAAGCAAAATTAACAC
Shewanella amazonensis SB2B Sama_1363 -123 4.2 CTGTAAGCTAAGCCTGACAC
Shewanella pealeana ATCC 700345 Spea_2796 -111 4.4 GTGGCAAGCGCAATTGACAT
Shewanella halifaxensis HAW-EB4 Shal_2901 -110 4.4 GTGGCAAGCGCGATTGACAT
Shewanella piezotolerans WP3 swp_3441 -76 4.2 TTGGCACGCACAATTGACAT
Shewanella woodyi ATCC 51908 Swoo_3222 -129 4.5 CTGGAAAACTTACTTGCCAT
Position: -160
Score: 4.6
Sequence: GTGGAAACTTTGCCTGACAA
Locus tag: Shal_3175
Shal_3175 -160 4.6 GTGGAAACTTTGCCTGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepD
Ortholog function: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Shewanella putrefaciens CN-32 Sputcn32_0954 -108 3.9 CTGGCAACTTTGGCTGCCAG
Shewanella sp W3-18-1 Sputw3181_3222 -108 3.9 CTGGCAACTTTGGCTGCCAG
Shewanella baltica OS155 Sbal_0940 -123 4 CTGGAAACTTTGGCTGCCAG
Shewanella amazonensis SB2B Sama_2519 -123 4.4 CTGGAAACTTTGGCTTCCAC
Shewanella loihica PV-4 Shew_2852 -123 4.6 GTGGCAACTTAGTATGACAC
Shewanella pealeana ATCC 700345 Spea_3091 -141 4.5 GTGGAAACTTTGGCTGACAA
Shewanella halifaxensis HAW-EB4 Shal_3175 -160 4.6 GTGGAAACTTTGCCTGACAA
Shewanella piezotolerans WP3 swp_1180 -140 4 ATGGCAACTTCTGCTGACAC
Shewanella woodyi ATCC 51908 Swoo_3603 -180 3.8 TTGGCAACTTTCAATGACAG
Position: -202
Score: 3.9
Sequence: TAGGAAACCTTTTCTTACAC
Locus tag: Shal_3258
Shal_3258 -202 3.9 TAGGAAACCTTTTCTTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pep3
Ortholog function: peptidase, M13 family
Shewanella oneidensis MR-1 SO_3844 -173 4.2 ATGGTAATTTTTAGTTACAA
Shewanella putrefaciens CN-32 Sputcn32_0791 -276 3.6 ATGTTAAGTTTATTTGCCTT
Shewanella sp W3-18-1 Sputw3181_3384 -276 3.6 ATGTTAAGTTTATTTGCCTT
Shewanella sp ANA-3 Shewana3_0759 -172 4.2 ATGGTAATTTTTAGTTACAA
Shewanella sp MR-4 Shewmr4_3179 -173 4.2 ATGGTAATTTTTAGTTACAA
Shewanella sp MR-7 Shewmr7_0787 -172 4.2 ATGGTAATTTTTAGTTACAA
Shewanella baltica OS155 Sbal_0685 -173 4 CTGGTAACCTTTAGTTACAT
Shewanella denitrificans OS217 Sden_1089 -224 3.8 TTGGTTACATAAATTGCCAG
Shewanella loihica PV-4 Shew_2973 -180 4.1 GAGGAAATCTTTACTTACAT
Shewanella pealeana ATCC 700345 Spea_3177 -237 3.8 TGGGAAACCTTTTCTTACAC
Shewanella halifaxensis HAW-EB4 Shal_3258 -202 3.9 TAGGAAACCTTTTCTTACAC
Shewanella piezotolerans WP3 swp_3866 -189 3.9 TAGGAAACCTTTTCTTACAC
Shewanella sediminis HAW-EB3 Ssed_3509 -218 4 AAGGAAACCTTTACTTACAC
Shewanella woodyi ATCC 51908 Swoo_0911 -178 3.7 AAGGAAACCTTTTCTTACAT
Position: -105
Score: 3.9
Sequence: AAGTAAAGCATGCTTGACTT
Position: -61
Score: 4.5
Sequence: AAGTCAAGCTTACTTTACAT
Locus tag: Shal_4179
Shal_4179 -105 3.9 AAGTAAAGCATGCTTGACTT
-61 4.5 AAGTCAAGCTTACTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_3409
Ortholog function: hypothetical protein
Shewanella frigidimarina NCIMB 400 Sfri_3409 -99 4.7 AAGTAAAGCTTACTTGACAC
-55 4.3 AAGTCAAGCTTAGTTGACAT
Shewanella loihica PV-4 Shew_3626 -90 4.4 ATGTAAAGCATGCTTGACCT
-45 4.1 ATGTAAAGGGTGTTTGACAT
Shewanella pealeana ATCC 700345 Spea_0139 -106 3.9 AAGTAAAGCAAGCTTGACTT
-62 4.2 AAGTCAAGCGTGCTTTACAT
Shewanella halifaxensis HAW-EB4 Shal_4179 -105 3.9 AAGTAAAGCATGCTTGACTT
-61 4.5 AAGTCAAGCTTACTTTACAT
Shewanella piezotolerans WP3 swp_0181 -47 4.4 AAGTAAAGCTCACTTTACAA
Shewanella sediminis HAW-EB3 Ssed_4363 -111 3.9 AAGTAAAGCAAGCTTGACTT
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