Propagation of TyrR regulog to Shewanella halifaxensis HAW-EB4
| Source regulog: | TyrR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator |
| Biological process: | Amino acid utilization |
| Effector: | Tyrosine; Phenylalanine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella halifaxensis HAW-EB4 |
| Orthologous TF(s) | Shal_1533 |
| Regulated genes | 17 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -94
Score: 5.1 Sequence: GTGTAAACTAATCATTACAC
Locus tag: Shal_0859
|
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| Shal_0859 | -94 | 5.1 | GTGTAAACTAATCATTACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: brnQ | ||||
| Ortholog function: Branched-chain amino acid transport system carrier protein | ||||
| Shewanella oneidensis MR-1 | SO_0949 | -121 | 5 | GTGTAAACATAGGTTTGCAC |
| Shewanella putrefaciens CN-32 | Sputcn32_0889 | -107 | 5.1 | GTGTAAACATAGATTTGCAC |
| Shewanella sp W3-18-1 | Sputw3181_3284 | -107 | 5.1 | GTGTAAACATAGATTTGCAC |
| Shewanella sp ANA-3 | Shewana3_3332 | -106 | 5.1 | GTGTAAACATAGATTTGCAC |
| Shewanella sp MR-4 | Shewmr4_0794 | -106 | 5.1 | GTGTAAACATAGATTTGCAC |
| Shewanella sp MR-7 | Shewmr7_3229 | -106 | 5.1 | GTGTAAACATAGATTTGCAC |
| Shewanella baltica OS155 | Sbal_0842 | -107 | 5.1 | GTGTAAACAAAGATTTGCAC |
| Shewanella denitrificans OS217 | Sden_0746 | -229 | 4.1 | GAGTATCGAAAAGTTTACAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_0662 | -122 | 4.8 | GTGTATTTTTAACTTTACAA |
| Shewanella amazonensis SB2B | Sama_2740 | -109 | 4.5 | CTGTAATTCTGGCGTTACAC |
| Shewanella loihica PV-4 | Shew_0769 | -102 | 4.6 | GTGTAATAAGAAGTTTACAC |
| Shewanella pealeana ATCC 700345 | Spea_0804 | -90 | 5.2 | GTGTAAAGTAATAATTACAC |
| Shewanella halifaxensis HAW-EB4 | Shal_0859 | -94 | 5.1 | GTGTAAACTAATCATTACAC |
| Shewanella piezotolerans WP3 | swp_4229 | -153 | 5 | GTGTAAACCAAATATTACAC |
| Shewanella sediminis HAW-EB3 | Ssed_0892 | -106 | 4.6 | GTGTAATTGAAAGTTTACAC |
| Shewanella woodyi ATCC 51908 | Swoo_0894 | -67 | 5.1 | GTGTAATCTAAAGTTTACAC |
|
Position: -199
Score: 3.4 Sequence: TTGTAAATCAACATATGCTG
Locus tag: Shal_1352
|
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| Shal_1352 | -199 | 3.4 | TTGTAAATCAACATATGCTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceB | ||||
| Ortholog function: Malate synthase (EC 2.3.3.9) | ||||
| Shewanella oneidensis MR-1 | SO_1483 | -372 | 3.7 | GTGTAATCATTGTTTTTCGA |
| Shewanella putrefaciens CN-32 | Sputcn32_1238 | -304 | 4.7 | GTGTAATTATAAATTTACGT |
| Shewanella sp W3-18-1 | Sputw3181_2866 | -303 | 4.5 | GTGTAATTATAAATTTACTT |
| Shewanella sp ANA-3 | Shewana3_2943 | -372 | 4.3 | CTGTATATTTAAATTTTCAA |
| Shewanella sp MR-4 | Shewmr4_2767 | -372 | 4.3 | CTGTATAGTTAAATTTTCAA |
| Shewanella sp MR-7 | Shewmr7_2845 | -372 | 3.8 | CTGTACATTTAAATTTTCAG |
| Shewanella baltica OS155 | Sbal_1316 | -380 | 3.6 | CTGTATTAATATATTTACTG |
| Shewanella denitrificans OS217 | Sden_1245 | -324 | 4 | TTGTAAGTTATTATTTACTG |
| Shewanella frigidimarina NCIMB 400 | Sfri_1101 | -458 | 4.4 | tgGTAAAGaaAtATTTACAg |
| Shewanella amazonensis SB2B | Sama_2381 | -450 | 4.1 | TTGTAAATTAAATATTAAAT |
| -364 | 3.7 | GTGTATTAAAAATCTTACAG | ||
| Shewanella loihica PV-4 | Shew_1275 | -393 | 3.4 | CTGTATCGACAAAATTACTA |
| Shewanella pealeana ATCC 700345 | Spea_1290 | -415 | 3.9 | GTGGCAATAATTGTTAACGA |
| Shewanella halifaxensis HAW-EB4 | Shal_1352 | -458 | 4.1 | aTGTAAAagTAtATTgACgC |
| Shewanella piezotolerans WP3 | swp_1433 | -412 | 4.2 | CTGTATTTATAATATTACAC |
| Shewanella sediminis HAW-EB3 | Ssed_1414 | -371 | 4.2 | CTGTAAGTTTATTTTTACGC |
| Shewanella woodyi ATCC 51908 | Swoo_1528 | -401 | 3.9 | GTGTATCATTAAGTTTACTT |
| -341 | 3.6 | TTGGTAAATTTGTCTGACAA | ||
|
Position: -133
Score: 4.3 Sequence: GTGTAACAACTTCGTTACAC
Locus tag: Shal_1531
|
||||
| Shal_1531 | -133 | 4.3 | GTGTAACAACTTCGTTACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phhA | ||||
| Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1) | ||||
| Shewanella oneidensis MR-1 | SO_1666 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella putrefaciens CN-32 | Sputcn32_1386 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp W3-18-1 | Sputw3181_2715 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp ANA-3 | Shewana3_2781 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp MR-4 | Shewmr4_2607 | -122 | 4.4 | TTGTAATATTTACTTTACGT |
| Shewanella sp MR-7 | Shewmr7_2674 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella baltica OS155 | Sbal_1484 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella denitrificans OS217 | Sden_2595 | -127 | 4.4 | TTGTATGCTTAAGTTTACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1328 | -121 | 4.1 | TTGTATTTATTTGTTTACGA |
| Shewanella amazonensis SB2B | Sama_2222 | -123 | 4.3 | TTGTAATAAAAGCTTTACGA |
| Shewanella loihica PV-4 | Shew_1435 | -87 | 4.7 | ATGTAAATTTGAGGTTACAT |
| Shewanella pealeana ATCC 700345 | Spea_1448 | -239 | 4.3 | GTGTCAATTTCTATATACGC |
| -173 | 4.8 | GTGTAACATTAGCATTACAC | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1531 | -133 | 4.3 | GTGTAACAACTTCGTTACAC |
| Shewanella piezotolerans WP3 | swp_1650 | -188 | 4.6 | CTGTAAATTATGGCTTACAA |
| -123 | 4.5 | ATGTAAACTTATGGTTACGC | ||
| Shewanella sediminis HAW-EB3 | Ssed_2930 | -188 | 3.7 | TCGTCAATAAATGGTGACGA |
| -122 | 4.2 | TTGTAAGCAAATTGTTACAC | ||
| Shewanella woodyi ATCC 51908 | Swoo_1715 | -186 | 3.8 | TTGGCAATAATTCAATACGA |
| -121 | 4.6 | GTGTAACTTTTTGGTTACAA | ||
|
Position: -159
Score: 4.1 Sequence: CTGTAAACAAGCCTTGCCAC
Locus tag: Shal_1533
|
||||
| Shal_1533 | -159 | 4.1 | CTGTAAACAAGCCTTGCCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tyrR | ||||
| Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis | ||||
| Shewanella oneidensis MR-1 | SO_1669 | -190 | 4.7 | CTGTAAACTAGGCTTGCCAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1388 | -188 | 4.8 | CTGTAAACTTGACTTGCCAC |
| Shewanella sp W3-18-1 | Sputw3181_2713 | -188 | 4.8 | CTGTAAACTTGACTTGCCAC |
| Shewanella sp ANA-3 | Shewana3_2779 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella sp MR-4 | Shewmr4_2605 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella sp MR-7 | Shewmr7_2672 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella baltica OS155 | Sbal_1486 | -196 | 4.7 | CTGTAAACTAGGCTTGCCAC |
| Shewanella denitrificans OS217 | Sden_2593 | -155 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1330 | -92 | 4.7 | CTGTAAACTTCACTTGCCAC |
| Shewanella amazonensis SB2B | Sama_2220 | -134 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella loihica PV-4 | Shew_1437 | -162 | 4.7 | GTGTAAACAACTCTTGCCAC |
| Shewanella pealeana ATCC 700345 | Spea_1450 | -158 | 4.6 | CTGTAAACAAGTCTTGCCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1533 | -159 | 4.1 | CTGTAAACAAGCCTTGCCAC |
| Shewanella piezotolerans WP3 | swp_1652 | -309 | 4.6 | cTGTAAAcaagtCTTgcCAC |
| Shewanella sediminis HAW-EB3 | Ssed_2928 | -151 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella woodyi ATCC 51908 | Swoo_1717 | -161 | 4.6 | CTGTAAACAAGACTTGCCAC |
|
Position: -183
Score: 4.7 Sequence: CTGTAAGTATAAGTTTACAA
Locus tag: Shal_1534
|
||||
| Shal_1534 | -183 | 4.7 | CTGTAAGTATAAGTTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmgC | ||||
| Ortholog function: Fumarylacetoacetase (EC 3.7.1.2) | ||||
| Shewanella oneidensis MR-1 | SO_1670 | -323 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -239 | 4.3 | ACGTAATGATTAGTTTACAG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1389 | -352 | 3.9 | ATGTAACCGTATCGTTCCAC |
| -268 | 4 | ACGTAATGATTAGTTTACGA | ||
| Shewanella sp W3-18-1 | Sputw3181_2712 | -352 | 3.9 | ATGTAACCGTATCGTTCCAC |
| -268 | 4 | ACGTAATGATTAGTTTACGA | ||
| Shewanella sp ANA-3 | Shewana3_2778 | -320 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -236 | 4.4 | ACGTAATGATTAGTTTACAA | ||
| Shewanella sp MR-4 | Shewmr4_2604 | -319 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -235 | 4.4 | ACGTAATGATTAGTTTACAA | ||
| Shewanella sp MR-7 | Shewmr7_2671 | -319 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -235 | 4.4 | ACGTAATGATTAGTTTACAA | ||
| Shewanella baltica OS155 | Sbal_1487 | -358 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -274 | 4 | ACGTAATGATTAGTTTACGA | ||
| Shewanella denitrificans OS217 | Sden_2592 | -228 | 4.1 | ATGTAACGAATTAGTGCCAT |
| -146 | 4.1 | TTGTACTGAAAAGTTTACAG | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1331 | -155 | 4.9 | TTGTAACGAATAATTTACAA |
| Shewanella amazonensis SB2B | Sama_2219 | -234 | 4.3 | GTGTAAAAAGAATTTGCCAG |
| -150 | 4.4 | CTGTATTTAAAAGTTTACAA | ||
| Shewanella loihica PV-4 | Shew_1438 | -169 | 4.5 | CTGTCATGAATTGTTTACAA |
| Shewanella pealeana ATCC 700345 | Spea_1451 | -197 | 4.8 | GTGTATCTATAAGTTTACAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1534 | -183 | 4.7 | CTGTAAGTATAAGTTTACAA |
| Shewanella piezotolerans WP3 | swp_1653 | -179 | 4.8 | CTGTAATTATATGTTTACAA |
| Shewanella sediminis HAW-EB3 | Ssed_2927 | -238 | 4 | ATGTAAAAGCTTGTTGCCAC |
| -155 | 4 | GTGTAACTGTTTATTTACGT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1718 | -256 | 4.2 | ATGTAACAAGAGATTGCCAC |
| -172 | 4.8 | CTGTAATTATTTATTTACAA | ||
|
Position: -157
Score: 4.9 Sequence: GTGGAAAGCAAAATTGCCAG
Locus tag: Shal_1711
|
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| Shal_1711 | -157 | 4.9 | GTGGAAAGCAAAATTGCCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ldh | ||||
| Ortholog function: Leucine dehydrogenase (EC 1.4.1.9) | ||||
| Shewanella oneidensis MR-1 | SO_2638 | -154 | 5.2 | GTGGAAAGCTAGATTGCCAC |
| Shewanella putrefaciens CN-32 | Sputcn32_2238 | -155 | 5.2 | GTGGAAAGCTAAATTGCCAC |
| Shewanella sp W3-18-1 | Sputw3181_1771 | -155 | 5.2 | GTGGAAAGCTAAATTGCCAC |
| Shewanella sp ANA-3 | Shewana3_1742 | -154 | 5.2 | GTGGAAAGCTAGATTGCCAC |
| Shewanella sp MR-4 | Shewmr4_1598 | -154 | 5.2 | GTGGAAAGCTAGATTGCCAC |
| Shewanella sp MR-7 | Shewmr7_1673 | -154 | 5.2 | GTGGAAAGCTAGATTGCCAC |
| Shewanella baltica OS155 | Sbal_2483 | -134 | 5.2 | GTGGAAAGCTAAATTGCCAC |
| Shewanella denitrificans OS217 | Sden_1823 | -140 | 4.9 | GTGGCAAGCAAAATTGCCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2265 | -178 | 5.2 | GTGGCAAGCTAAATTTCCAC |
| Shewanella amazonensis SB2B | Sama_2067 | -147 | 5.1 | GTGGAAAGCAAAATTGCCAC |
| Shewanella loihica PV-4 | Shew_1555 | -157 | 5.1 | GTGGAAAGCAAAATTGCCAC |
| Shewanella pealeana ATCC 700345 | Spea_2543 | -157 | 4.9 | GTGGAAAGCAAAATTGCCAG |
| Shewanella halifaxensis HAW-EB4 | Shal_1711 | -157 | 4.9 | GTGGAAAGCAAAATTGCCAG |
| Shewanella piezotolerans WP3 | swp_1857 | -158 | 4.8 | GTGGAAAGCAGAATTGCCAC |
| Shewanella sediminis HAW-EB3 | Ssed_1877 | -156 | 5.2 | GTGGAAAGCTAAATTGCCAC |
| Shewanella woodyi ATCC 51908 | Swoo_2710 | -157 | 5.1 | GTGGAAAGCAAAATTGCCAC |
|
Position: -161
Score: 4.8 Sequence: ATGTAAACCAATATATACAT
Locus tag: Shal_2234
|
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| Shal_2234 | -161 | 4.8 | ATGTAAACCAATATATACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bkdA1 | ||||
| Ortholog function: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) | ||||
| Shewanella oneidensis MR-1 | SO_2339 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1885 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella sp W3-18-1 | Sputw3181_2123 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella sp ANA-3 | Shewana3_2131 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella sp MR-4 | Shewmr4_2028 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella sp MR-7 | Shewmr7_1947 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella baltica OS155 | Sbal_4508 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella denitrificans OS217 | Sden_1786 | -153 | 4.5 | GCGTAAAGCAAATTATACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1935 | -156 | 4.5 | TCGTAAAGCAATATATACAT |
| Shewanella amazonensis SB2B | Sama_1709 | -150 | 4.3 | CTGTAAAGCAATTAATACAT |
| Shewanella loihica PV-4 | Shew_1925 | -175 | 4.7 | TTGTAAAGCTAGCGATACAT |
| Shewanella pealeana ATCC 700345 | Spea_2246 | -161 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2234 | -161 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella piezotolerans WP3 | swp_2606 | -162 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella sediminis HAW-EB3 | Ssed_2329 | -172 | 4.4 | TTGTAAAGCTAAAGATACGC |
| Shewanella woodyi ATCC 51908 | Swoo_2278 | -171 | 4 | ATGTAAAGCTAAACATACGG |
|
Position: -214
Score: 4.4 Sequence: TTGTAACATTCAGTTTACAA
Locus tag: Shal_2751
|
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| Shal_2751 | -214 | 4.4 | TTGTAACATTCAGTTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mdeA | ||||
| Ortholog function: Methionine gamma-lyase (EC 4.4.1.11) | ||||
| Shewanella oneidensis MR-1 | SO_1812 | -197 | 3.9 | ATGTAACAACTTAGTTACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1507 | -210 | 4.1 | ATGTAACAAGTTAATTACAC |
| Shewanella sp W3-18-1 | Sputw3181_2594 | -210 | 4.1 | ATGTAACAAGTTAATTACAC |
| Shewanella sp ANA-3 | Shewana3_2643 | -208 | 3.9 | ATGTAACAACTTAGTTACAG |
| Shewanella sp MR-4 | Shewmr4_2477 | -208 | 3.9 | ATGTAACAACTTAGTTACAG |
| Shewanella sp MR-7 | Shewmr7_2545 | -208 | 3.9 | ATGTAACAACTTAGTTACAG |
| Shewanella baltica OS155 | Sbal_1622 | -199 | 4.1 | ATGTAACAAGTTAATTACAC |
| Shewanella denitrificans OS217 | Sden_2521 | -152 | 4.3 | ATGTAACATAGTTTTTACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1369 | -148 | 4.7 | TTGTAAAATTGTTTTTACAT |
| Shewanella pealeana ATCC 700345 | Spea_2664 | -215 | 4 | ACGTAACAATCACTTTACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2751 | -214 | 4.4 | TTGTAACATTCAGTTTACAA |
| Shewanella piezotolerans WP3 | swp_3243 | -242 | 4.1 | ACGTAACATATATTTTACAA |
|
Position: -162
Score: 4 Sequence: GTGCAAAACTAAATCGCCAA
Locus tag: Shal_2876
|
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| Shal_2876 | -162 | 4 | GTGCAAAACTAAATCGCCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ivdC | ||||
| Ortholog function: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) | ||||
| Shewanella oneidensis MR-1 | SO_1679 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1399 | -167 | 4.3 | CTGTAAATCCTTACTGACAA |
| Shewanella sp W3-18-1 | Sputw3181_2702 | -167 | 4.3 | CTGTAAATCCTTACTGACAA |
| Shewanella sp ANA-3 | Shewana3_2769 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella sp MR-4 | Shewmr4_2595 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella sp MR-7 | Shewmr7_2662 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella baltica OS155 | Sbal_1497 | -162 | 4.3 | CTGTAAATCCTTACTGACAT |
| Shewanella denitrificans OS217 | Sden_1941 | -159 | 4.4 | GTGTAAATCTTCAGTGACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1340 | -140 | 4.1 | CTGTAAATCTTCACTGACAA |
| Shewanella amazonensis SB2B | Sama_1377 | -195 | 3.8 | GTGTCAATCTCAGTTCCCGC |
| -173 | 4.6 | CTGTAAATCCAGAGTGACAA | ||
| Shewanella loihica PV-4 | Shew_1669 | -168 | 4.4 | CTGTAAATTCAGCCTGACAA |
| Shewanella pealeana ATCC 700345 | Spea_2781 | -231 | 4.5 | GTGTAAATTCTATGTGACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2876 | -231 | 4.4 | GTGTAAATCCTTTGTGACAT |
| Shewanella piezotolerans WP3 | swp_3385 | -75 | 3.8 | TTTTAAGTTGATGTTTACAC |
| Shewanella sediminis HAW-EB3 | Ssed_1475 | -185 | 4.5 | CTGTAAATCCTGAGTGACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3200 | -173 | 4.7 | CTGTAAATCTTGAGTGACAT |
|
Position: -231
Score: 4.4 Sequence: GTGTAAATCCTTTGTGACAT
Locus tag: Shal_2878
|
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| Shal_2878 | -231 | 4.4 | GTGTAAATCCTTTGTGACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ivdA | ||||
| Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) | ||||
| Shewanella oneidensis MR-1 | SO_1677 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1397 | -167 | 4.3 | CTGTAAATCCTTACTGACAA |
| Shewanella sp W3-18-1 | Sputw3181_2704 | -167 | 4.3 | CTGTAAATCCTTACTGACAA |
| Shewanella sp ANA-3 | Shewana3_2771 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella sp MR-4 | Shewmr4_2597 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella sp MR-7 | Shewmr7_2664 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella baltica OS155 | Sbal_1495 | -162 | 4.3 | CTGTAAATCCTTACTGACAT |
| Shewanella denitrificans OS217 | Sden_1943 | -159 | 4.4 | GTGTAAATCTTCAGTGACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1338 | -140 | 4.1 | CTGTAAATCTTCACTGACAA |
| Shewanella amazonensis SB2B | Sama_1375 | -195 | 3.8 | GTGTCAATCTCAGTTCCCGC |
| -173 | 4.6 | CTGTAAATCCAGAGTGACAA | ||
| Shewanella loihica PV-4 | Shew_1667 | -168 | 4.4 | CTGTAAATTCAGCCTGACAA |
| Shewanella pealeana ATCC 700345 | Spea_2783 | -231 | 4.5 | GTGTAAATTCTATGTGACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2878 | -231 | 4.4 | GTGTAAATCCTTTGTGACAT |
| Shewanella piezotolerans WP3 | swp_3387 | -75 | 3.8 | TTTTAAGTTGATGTTTACAC |
| Shewanella sediminis HAW-EB3 | Ssed_1473 | -185 | 4.5 | CTGTAAATCCTGAGTGACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3202 | -173 | 4.7 | CTGTAAATCTTGAGTGACAT |
|
Position: -110
Score: 4.4 Sequence: GTGGCAAGCGCGATTGACAT
Locus tag: Shal_2901
|
||||
| Shal_2901 | -110 | 4.4 | GTGGCAAGCGCGATTGACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: liuR | ||||
| Ortholog function: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family | ||||
| Shewanella oneidensis MR-1 | SO_1898 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1720 | -108 | 4.5 | ATGGCAATTGGGATTGACAC |
| Shewanella sp W3-18-1 | Sputw3181_2305 | -108 | 4.5 | ATGGCAATTGGGATTGACAC |
| Shewanella sp ANA-3 | Shewana3_1673 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella sp MR-4 | Shewmr4_2321 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella sp MR-7 | Shewmr7_2393 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella baltica OS155 | Sbal_2827 | -108 | 4.5 | ATGGCAATTGGGATTGACAC |
| Shewanella denitrificans OS217 | Sden_2244 | -117 | 4.2 | GTGGAAACAGAATTTAACAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2726 | -117 | 4.7 | GTGGCAAGCAAAATTAACAC |
| Shewanella amazonensis SB2B | Sama_1363 | -123 | 4.2 | CTGTAAGCTAAGCCTGACAC |
| Shewanella pealeana ATCC 700345 | Spea_2796 | -111 | 4.4 | GTGGCAAGCGCAATTGACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2901 | -110 | 4.4 | GTGGCAAGCGCGATTGACAT |
| Shewanella piezotolerans WP3 | swp_3441 | -76 | 4.2 | TTGGCACGCACAATTGACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3222 | -129 | 4.5 | CTGGAAAACTTACTTGCCAT |
|
Position: -160
Score: 4.6 Sequence: GTGGAAACTTTGCCTGACAA
Locus tag: Shal_3175
|
||||
| Shal_3175 | -160 | 4.6 | GTGGAAACTTTGCCTGACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepD | ||||
| Ortholog function: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0954 | -108 | 3.9 | CTGGCAACTTTGGCTGCCAG |
| Shewanella sp W3-18-1 | Sputw3181_3222 | -108 | 3.9 | CTGGCAACTTTGGCTGCCAG |
| Shewanella baltica OS155 | Sbal_0940 | -123 | 4 | CTGGAAACTTTGGCTGCCAG |
| Shewanella amazonensis SB2B | Sama_2519 | -123 | 4.4 | CTGGAAACTTTGGCTTCCAC |
| Shewanella loihica PV-4 | Shew_2852 | -123 | 4.6 | GTGGCAACTTAGTATGACAC |
| Shewanella pealeana ATCC 700345 | Spea_3091 | -141 | 4.5 | GTGGAAACTTTGGCTGACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_3175 | -160 | 4.6 | GTGGAAACTTTGCCTGACAA |
| Shewanella piezotolerans WP3 | swp_1180 | -140 | 4 | ATGGCAACTTCTGCTGACAC |
| Shewanella woodyi ATCC 51908 | Swoo_3603 | -180 | 3.8 | TTGGCAACTTTCAATGACAG |
|
Position: -202
Score: 3.9 Sequence: TAGGAAACCTTTTCTTACAC
Locus tag: Shal_3258
|
||||
| Shal_3258 | -202 | 3.9 | TAGGAAACCTTTTCTTACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pep3 | ||||
| Ortholog function: peptidase, M13 family | ||||
| Shewanella oneidensis MR-1 | SO_3844 | -173 | 4.2 | ATGGTAATTTTTAGTTACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0791 | -276 | 3.6 | ATGTTAAGTTTATTTGCCTT |
| Shewanella sp W3-18-1 | Sputw3181_3384 | -276 | 3.6 | ATGTTAAGTTTATTTGCCTT |
| Shewanella sp ANA-3 | Shewana3_0759 | -172 | 4.2 | ATGGTAATTTTTAGTTACAA |
| Shewanella sp MR-4 | Shewmr4_3179 | -173 | 4.2 | ATGGTAATTTTTAGTTACAA |
| Shewanella sp MR-7 | Shewmr7_0787 | -172 | 4.2 | ATGGTAATTTTTAGTTACAA |
| Shewanella baltica OS155 | Sbal_0685 | -173 | 4 | CTGGTAACCTTTAGTTACAT |
| Shewanella denitrificans OS217 | Sden_1089 | -224 | 3.8 | TTGGTTACATAAATTGCCAG |
| Shewanella loihica PV-4 | Shew_2973 | -180 | 4.1 | GAGGAAATCTTTACTTACAT |
| Shewanella pealeana ATCC 700345 | Spea_3177 | -237 | 3.8 | TGGGAAACCTTTTCTTACAC |
| Shewanella halifaxensis HAW-EB4 | Shal_3258 | -202 | 3.9 | TAGGAAACCTTTTCTTACAC |
| Shewanella piezotolerans WP3 | swp_3866 | -189 | 3.9 | TAGGAAACCTTTTCTTACAC |
| Shewanella sediminis HAW-EB3 | Ssed_3509 | -218 | 4 | AAGGAAACCTTTACTTACAC |
| Shewanella woodyi ATCC 51908 | Swoo_0911 | -178 | 3.7 | AAGGAAACCTTTTCTTACAT |
|
Position: -105
Score: 3.9 Sequence: AAGTAAAGCATGCTTGACTT
Position: -61
Score: 4.5 Sequence: AAGTCAAGCTTACTTTACAT
Locus tag: Shal_4179
|
||||
| Shal_4179 | -105 | 3.9 | AAGTAAAGCATGCTTGACTT | |
| -61 | 4.5 | AAGTCAAGCTTACTTTACAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_3409 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3409 | -99 | 4.7 | AAGTAAAGCTTACTTGACAC |
| -55 | 4.3 | AAGTCAAGCTTAGTTGACAT | ||
| Shewanella loihica PV-4 | Shew_3626 | -90 | 4.4 | ATGTAAAGCATGCTTGACCT |
| -45 | 4.1 | ATGTAAAGGGTGTTTGACAT | ||
| Shewanella pealeana ATCC 700345 | Spea_0139 | -106 | 3.9 | AAGTAAAGCAAGCTTGACTT |
| -62 | 4.2 | AAGTCAAGCGTGCTTTACAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_4179 | -105 | 3.9 | AAGTAAAGCATGCTTGACTT |
| -61 | 4.5 | AAGTCAAGCTTACTTTACAT | ||
| Shewanella piezotolerans WP3 | swp_0181 | -47 | 4.4 | AAGTAAAGCTCACTTTACAA |
| Shewanella sediminis HAW-EB3 | Ssed_4363 | -111 | 3.9 | AAGTAAAGCAAGCTTGACTT |