Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SO1415 regulog to Shewanella halifaxensis HAW-EB4

Reference regulog properties
Source regulog: SO1415 - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process:
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella halifaxensis HAW-EB4
Orthologous TF(s) Shal_3965
Regulated genes 3
Built upon 18 sites [see more]
Predicted regulatory interactions in Shewanella halifaxensis HAW-EB4
Locus tag Position Score Sequence
Position: -247
Score: 6.7
Sequence: ATTCGTGAGGCAGCTCTCGAAT
Locus tag: Shal_3965
Shal_3965 -247 6.7 ATTCGTGAGGCAGCTCTCGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1415
Ortholog function: Transcriptional regulator, TetR family
Shewanella oneidensis MR-1 SO_1415 -238 6.7 ATTCGTGAGACGTCTCTTGAAT
Shewanella sp MR-4 Shewmr4_0298 -241 6.4 ATTCGTGAGTTATCTCGTGAAT
Shewanella loihica PV-4 Shew_0277 -235 6.3 ATTCGTGAACCATGTCCCGAAT
Shewanella pealeana ATCC 700345 Spea_0326 -247 6.8 ATTCGTGAGTCAGCTCTCGAAT
Shewanella halifaxensis HAW-EB4 Shal_3965 -247 6.7 ATTCGTGAGGCAGCTCTCGAAT
Shewanella sediminis HAW-EB3 Ssed_4183 -259 5.9 ATTCGTGAAGCAGATCTCGAAG
Position: -119
Score: 6.7
Sequence: ATTCGAGAGCTGCCTCACGAAT
Locus tag: Shal_3966
Shal_3966 -119 6.7 ATTCGAGAGCTGCCTCACGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1414
Ortholog function: Flavocytochrome c flavin subunit
Shewanella oneidensis MR-1 SO_1414 -117 6.7 ATTCAAGAGACGTCTCACGAAT
Shewanella sp MR-4 Shewmr4_0299 -116 6.4 ATTCACGAGATAACTCACGAAT
Shewanella loihica PV-4 Shew_0276 -118 6.3 ATTCGGGACATGGTTCACGAAT
Shewanella pealeana ATCC 700345 Spea_0325 -119 6.8 ATTCGAGAGCTGACTCACGAAT
Shewanella halifaxensis HAW-EB4 Shal_3966 -119 6.7 ATTCGAGAGCTGCCTCACGAAT
Shewanella sediminis HAW-EB3 Ssed_4184 -116 5.9 CTTCGAGATCTGCTTCACGAAT
Position: -156
Score: 6.3
Sequence: ATTCGCGACTTGGCTCACGAAT
Locus tag: Shal_3970
Shal_3970 -156 6.3 ATTCGCGACTTGGCTCACGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1410
Ortholog function: periplasmic RmlC-type Cupin domain family protein
Shewanella oneidensis MR-1 SO_1410 -163 5.8 ATTCGCGAGTAAAGTCACGAAT
Shewanella sp MR-4 Shewmr4_0303 -149 5.8 ATTCGCGAGTAAAGTCACGAAT
Shewanella loihica PV-4 Shew_0272 -151 6.3 ATTCGCGAGCCAAGTCACGAAT
Shewanella pealeana ATCC 700345 Spea_0321 -157 5.9 ATTCGCGACCGAGCTCACGAAT
Shewanella halifaxensis HAW-EB4 Shal_3970 -156 6.3 ATTCGCGACTTGGCTCACGAAT
Shewanella sediminis HAW-EB3 Ssed_4188 -154 6 ATTCGCGAGCTCTGTCACGAAT
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