Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Shewanella halifaxensis HAW-EB4

Reference regulog properties
Source regulog: NarP - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella halifaxensis HAW-EB4
Orthologous TF(s) Shal_0884
Regulated genes 16
Built upon 249 sites [see more]
Predicted regulatory interactions in Shewanella halifaxensis HAW-EB4
Locus tag Position Score Sequence
Position: -237
Score: 3.9
Sequence: TAATACCTAGGTGGTA
Locus tag: Shal_0176
Shal_0176 -237 3.9 TAATACCTAGGTGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Shewanella halifaxensis HAW-EB4 Shal_0176 -237 3.9 TAATACCTAGGTGGTA
Shewanella sediminis HAW-EB3 Ssed_1953 -235 4.1 TAGTTCTTTAGTAGTA
Position: -157
Score: 4.1
Sequence: CACTTCTAAAGTAGTA
Locus tag: Shal_0331
Shal_0331 -157 4.1 CACTTCTAAAGTAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_3897
Ortholog function: Flavocytochrome c, flavin subunit
Shewanella frigidimarina NCIMB 400 Sfri_3897 -123 3.9 TACCTACAATTGATTA
Shewanella pealeana ATCC 700345 Spea_3939 -158 4.6 TACCTCCAAAGTAATA
Shewanella halifaxensis HAW-EB4 Shal_0331 -157 4.1 CACTTCTAAAGTAGTA
Shewanella piezotolerans WP3 swp_0220 -226 4.7 TACTCCTAAAGTAGTA
Shewanella sediminis HAW-EB3 Ssed_0273 -159 4.7 TACCTCTAAAGTTGTA
Position: -260
Score: 4.8
Sequence: TACTCCTTTAGGGATA
Locus tag: Shal_0676
Shal_0676 -260 4.8 TACTCCTTTAGGGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp35
Ortholog function: Outer membrane porin, predicted
Shewanella oneidensis MR-1 SO3896 -255 5.2 TACCTCTTTAGTGGTA
Shewanella sp ANA-3 Shewana3_0733 -255 5.1 TACCTCTTTAGTAGTA
Shewanella sp MR-4 Shewmr4_3228 -255 5.1 TACCTCTTTAGTAGTA
Shewanella sp MR-7 Shewmr7_0761 -255 5.1 TACCTCTTTAGTAGTA
Shewanella baltica OS155 Sbal_3570 -256 4.9 TACCACTTAAGTAGTA
Shewanella frigidimarina NCIMB 400 Sfri_0503 -243 4.3 CATCCCTAAAGAGGTA
Shewanella loihica PV-4 Shew_3260 -261 4.9 TACCCCTTTGGGAGTA
Shewanella pealeana ATCC 700345 Spea_0589 -260 4.6 CACCTCTTTATAGATA
Shewanella halifaxensis HAW-EB4 Shal_0676 -260 4.8 TACTCCTTTAGGGATA
Shewanella piezotolerans WP3 swp_4514 -260 5.1 TACCCCTTTAGGGATA
Shewanella sediminis HAW-EB3 Ssed_4009 -263 4.1 TACTTCGTTCTAGGTA
Position: -119
Score: 4.7
Sequence: TACCCCTTGCGAGGTA
Locus tag: Shal_0716
Shal_0716 -119 4.7 TACCCCTTGCGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD
Ortholog function: Periplasmic nitrate reductase component NapD
Shewanella oneidensis MR-1 SO0849 -119 4.9 TACCTCTTGTGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_3147 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp W3-18-1 Sputw3181_0796 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp ANA-3 Shewana3_3429 -118 4.8 TACCTCTTGCGAGGTA
Shewanella sp MR-4 Shewmr4_0705 -118 4.9 TACCTCTTGTGAGGTA
Shewanella sp MR-7 Shewmr7_3317 -118 4.9 TACCTCTTGTGAGGTA
Shewanella baltica OS155 Sbal_3510 -119 4.9 TACCTCTTGTGAGGTA
Shewanella amazonensis SB2B Sama_2982 -105 4.8 TACCTCCTAGTGGGTA
Shewanella loihica PV-4 Shew_3205 -123 4.9 TACCTCTCAAGAGGTA
Shewanella pealeana ATCC 700345 Spea_0624 -118 4.9 TACCCCTTGTGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0716 -119 4.7 TACCCCTTGCGAGGTA
Shewanella piezotolerans WP3 swp_4456 -111 4.9 TACCCCTTGTGAGGTA
Shewanella sediminis HAW-EB3 Ssed_3956 -132 4.7 TACCTCTTGTTGGGTA
Shewanella woodyi ATCC 51908 Swoo_4109 -124 5 TACCCCTTACTAGGTA
Position: -101
Score: 4.3
Sequence: TACCTCGAATTGAGTA
Locus tag: Shal_0776
Shal_0776 -101 4.3 TACCTCGAATTGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fccA
Ortholog function: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Shewanella oneidensis MR-1 SO0970 -43 4.5 TATCCCTTATTAAGTA
Shewanella putrefaciens CN-32 Sputcn32_0905 -42 4.7 TAACCCTTATTAAGTA
Shewanella sp W3-18-1 Sputw3181_3267 -42 4.7 TAACCCTTATTAAGTA
Shewanella sp ANA-3 Shewana3_3318 -43 4.7 TAACCCTTATTAAGTA
Shewanella sp MR-4 Shewmr4_0808 -43 4.7 TAACCCTTATTAAGTA
Shewanella sp MR-7 Shewmr7_3215 -43 4.7 TAACCCTTATTAAGTA
Shewanella baltica OS155 Sbal_0859 -42 4.7 TAACCCTTATTAAGTA
Shewanella frigidimarina NCIMB 400 Sfri_3690 -313 4.6 TACCTCTTTATAACTA
Shewanella amazonensis SB2B Sama_0611 -35 5.2 TACCTCTTTATAAGTA
Shewanella loihica PV-4 Shew_3112 -268 4.5 TACCTCTTTGTGATTA
Shewanella pealeana ATCC 700345 Spea_0722 -101 4.5 TACCTCAAAGTGAGTA
Shewanella halifaxensis HAW-EB4 Shal_0776 -101 4.3 TACCTCGAATTGAGTA
Position: -159
Score: 4.7
Sequence: TACCTCCAACGAGGTA
Locus tag: Shal_0885
Shal_0885 -159 4.7 TACCTCCAACGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shewanella oneidensis MR-1 SO3981 -199 5.1 TACCTCTTAGGGGGTA
Shewanella putrefaciens CN-32 Sputcn32_0684 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp W3-18-1 Sputw3181_3487 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp ANA-3 Shewana3_0657 -163 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-4 Shewmr4_0658 -164 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-7 Shewmr7_3364 -164 5.1 TACCTCTTAGGGGGTA
Shewanella baltica OS155 Sbal_0793 -146 5.1 TACCTCTTAGGGGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0621 -188 5.1 TACCCCTTATGGGGTA
Shewanella amazonensis SB2B Sama_0647 -160 4.9 TACCCATTAAGTGGTA
Shewanella loihica PV-4 Shew_0843 -161 5.1 TACCCCTTATGGGGTA
Shewanella pealeana ATCC 700345 Spea_0830 -157 5 TACCTCCTATGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0885 -159 4.7 TACCTCCAACGAGGTA
Shewanella piezotolerans WP3 swp_3960 -263 5.1 TACCCCTTATGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0930 -161 4.9 TACCCCTAAGGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0971 -160 5.2 TACCCCTTATGAGGTA
Position: -98
Score: 4.7
Sequence: TACCTCGTTGGAGGTA
Locus tag: Shal_0886
Shal_0886 -98 4.7 TACCTCGTTGGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shewanella oneidensis MR-1 SO3980 -95 5.2 TACCCCCTAAGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_0685 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp W3-18-1 Sputw3181_3486 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp ANA-3 Shewana3_0658 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-4 Shewmr4_0659 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-7 Shewmr7_3363 -77 5.2 TACCCCCTAAGAGGTA
Shewanella baltica OS155 Sbal_0794 -95 5.2 TACCCCCTAAGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0622 -111 5 TACCCCATAAGGGGTA
Shewanella amazonensis SB2B Sama_0648 -101 5 TACCACTTAATGGGTA
Shewanella loihica PV-4 Shew_0844 -102 5 TACCCCATAAGGGGTA
Shewanella pealeana ATCC 700345 Spea_0831 -101 4.9 TACCTCATAGGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0886 -98 4.7 TACCTCGTTGGAGGTA
Shewanella piezotolerans WP3 swp_3958 -96 5 TACCCCATAAGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0931 -100 5 TACCCCCTTAGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0972 -100 5 TACCTCATAAGGGGTA
Position: -153
Score: 4.6
Sequence: TACCTATAAAGATATA
Locus tag: Shal_1261
Shal_1261 -153 4.6 TACCTATAAAGATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nnrS2
Ortholog function: NnrS protein involved in response to NO
Shewanella loihica PV-4 Shew_0504 -177 4.4 TGCCTATAAAGAGGTA
Shewanella pealeana ATCC 700345 Spea_1227 -155 4.4 TACTCATTAAGATATA
Shewanella halifaxensis HAW-EB4 Shal_1261 -153 4.6 TACCTATAAAGATATA
Shewanella piezotolerans WP3 swp_3404 -158 4.5 TACCTACAAAGGAATA
Position: -182
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: Shal_2783
Shal_2783 -182 5.1 TACCCCTAAAGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omcA
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shewanella halifaxensis HAW-EB4 Shal_2783 -182 5.1 TACCCCTAAAGAAATA
Shewanella piezotolerans WP3 swp_3277 -184 5.1 TACCCCTAAAGAAATA
Position: -194
Score: 5.2
Sequence: TACCTCTTTAGAAATA
Locus tag: Shal_2784
Shal_2784 -194 5.2 TACCTCTTTAGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1 SO1778 -204 5.2 TACCTCTTTAGAAATA
Shewanella putrefaciens CN-32 Sputcn32_1478 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp W3-18-1 Sputw3181_2623 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp ANA-3 Shewana3_2676 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-4 Shewmr4_2510 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-7 Shewmr7_2578 -203 5.2 TACCTCTTTAGAAATA
Shewanella baltica OS155 Sbal_1589 -204 5.2 TACCTCTTTAGAAATA
Shewanella frigidimarina NCIMB 400 Sfri_2637 -178 4.9 TACCTCTTTATTAATA
Shewanella amazonensis SB2B Sama_1208 -192 4.9 TACCCCTTTTGAAATA
-133 5 TACCCCCTATGAGGTA
Shewanella loihica PV-4 Shew_2525 -193 5.2 TACCCCTTTAGAAATA
Shewanella pealeana ATCC 700345 Spea_2698 -195 5.2 TACCTCTTTAGAAATA
Shewanella halifaxensis HAW-EB4 Shal_2784 -194 5.2 TACCTCTTTAGAAATA
Shewanella piezotolerans WP3 swp_3278 -193 5.1 TACCTCTTTATAAATA
Shewanella sediminis HAW-EB3 Ssed_1525 -205 5 TACCCCTTTATAAATA
Shewanella woodyi ATCC 51908 Swoo_3125 -218 5 TACCCCTTTATAAATA
Position: -69
Score: 4.3
Sequence: TACCCCCTTCGATATA
Locus tag: Shal_2928
Shal_2928 -69 4.3 TACCCCCTTCGATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsE
Ortholog function: Periplasmic decaheme cytochrome c, DsmE
Shewanella halifaxensis HAW-EB4 Shal_2928 -69 4.3 TACCCCCTTCGATATA
Shewanella piezotolerans WP3 swp_3461 -34 4.3 TACCCCCTTCGATATA
Position: -151
Score: 4.6
Sequence: TACCTCTAAATCGGTA
Locus tag: Shal_3305
Shal_3305 -151 4.6 TACCTCTAAATCGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shew_2655
Ortholog function: Conserved hypothetical protein
Shewanella loihica PV-4 Shew_2655 -166 5 TACCACTTTAGAGATA
-152 4.3 TACCTCTAATTCAGTA
Shewanella pealeana ATCC 700345 Spea_3233 -165 4.5 TACCTACTTGTAGGTA
-151 4.4 TATCCCTAAATTAGTA
Shewanella halifaxensis HAW-EB4 Shal_3305 -165 4.3 TACCTATTTGTGTGTA
-151 4.6 TACCTCTAAATCGGTA
Shewanella piezotolerans WP3 swp_1107 -165 5 TACCCATTTATAGGTA
-151 4.9 TACCTCTAAATTAGTA
Shewanella sediminis HAW-EB3 Ssed_3185 -176 4.6 TACTACTTTAGGAGTA
-162 5 TACCTCCTTATAAGTA
Shewanella woodyi ATCC 51908 Swoo_3303 -164 5 TACCACTTTATAGGTA
-150 4.8 TACCACTTAATTAGTA
Position: -204
Score: 4.1
Sequence: TACTTCATTGTTGATA
Position: -105
Score: 4
Sequence: TATCGCTAATTAGGTA
Locus tag: Shal_3447
Shal_3447 -204 4.1 TACTTCATTGTTGATA
-105 4 TATCGCTAATTAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3058
Ortholog function: Flavocytochrome c, flavin subunit
Shewanella oneidensis MR-1 SO3058 -77 4.3 TACCTCCTTTTAGGTG
Shewanella putrefaciens CN-32 Sputcn32_2432 -77 4.5 TACCTCTTTTTAGGTG
Shewanella sp W3-18-1 Sputw3181_1576 -77 4.5 TACCTCTTTTTAGGTG
Shewanella sp ANA-3 Shewana3_1489 -77 4.5 TACCTCTTTTTAGGTG
Shewanella loihica PV-4 Shew_2281 -107 3.8 CCCCTCTTTTTAGGTA
Shewanella halifaxensis HAW-EB4 Shal_3447 -105 4 TATCGCTAATTAGGTA
Position: -109
Score: 4.7
Sequence: TATCTCTTTAGTGGTA
Locus tag: Shal_3689
Shal_3689 -109 4.7 TATCTCTTTAGTGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3600
Ortholog function: Predicted deca-heme c-type cytochrome
Shewanella pealeana ATCC 700345 Spea_3600 -109 4.6 TATCTCTTTAGTAGTA
Shewanella halifaxensis HAW-EB4 Shal_3689 -109 4.7 TATCTCTTTAGTGGTA
Shewanella piezotolerans WP3 swp_0694 -110 4.6 TATCTCTTTAGTAGTA
Shewanella sediminis HAW-EB3 Ssed_0742 -109 4.7 TATCCCTTTATGGGTA
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