Propagation of NarP regulog to Shewanella halifaxensis HAW-EB4
| Source regulog: | NarP - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite; Nitrate |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Shewanella halifaxensis HAW-EB4 |
| Orthologous TF(s) | Shal_0884 |
| Regulated genes | 16 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -237
Score: 3.9 Sequence: TAATACCTAGGTGGTA
Locus tag: Shal_0176
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| Shal_0176 | -237 | 3.9 | TAATACCTAGGTGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narK | ||||
| Ortholog function: Nitrate/nitrite antiporter | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_0176 | -237 | 3.9 | TAATACCTAGGTGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_1953 | -235 | 4.1 | TAGTTCTTTAGTAGTA |
|
Position: -157
Score: 4.1 Sequence: CACTTCTAAAGTAGTA
Locus tag: Shal_0331
|
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| Shal_0331 | -157 | 4.1 | CACTTCTAAAGTAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_3897 | ||||
| Ortholog function: Flavocytochrome c, flavin subunit | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3897 | -123 | 3.9 | TACCTACAATTGATTA |
| Shewanella pealeana ATCC 700345 | Spea_3939 | -158 | 4.6 | TACCTCCAAAGTAATA |
| Shewanella halifaxensis HAW-EB4 | Shal_0331 | -157 | 4.1 | CACTTCTAAAGTAGTA |
| Shewanella piezotolerans WP3 | swp_0220 | -226 | 4.7 | TACTCCTAAAGTAGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0273 | -159 | 4.7 | TACCTCTAAAGTTGTA |
|
Position: -260
Score: 4.8 Sequence: TACTCCTTTAGGGATA
Locus tag: Shal_0676
|
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| Shal_0676 | -260 | 4.8 | TACTCCTTTAGGGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp35 | ||||
| Ortholog function: Outer membrane porin, predicted | ||||
| Shewanella oneidensis MR-1 | SO3896 | -255 | 5.2 | TACCTCTTTAGTGGTA |
| Shewanella sp ANA-3 | Shewana3_0733 | -255 | 5.1 | TACCTCTTTAGTAGTA |
| Shewanella sp MR-4 | Shewmr4_3228 | -255 | 5.1 | TACCTCTTTAGTAGTA |
| Shewanella sp MR-7 | Shewmr7_0761 | -255 | 5.1 | TACCTCTTTAGTAGTA |
| Shewanella baltica OS155 | Sbal_3570 | -256 | 4.9 | TACCACTTAAGTAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0503 | -243 | 4.3 | CATCCCTAAAGAGGTA |
| Shewanella loihica PV-4 | Shew_3260 | -261 | 4.9 | TACCCCTTTGGGAGTA |
| Shewanella pealeana ATCC 700345 | Spea_0589 | -260 | 4.6 | CACCTCTTTATAGATA |
| Shewanella halifaxensis HAW-EB4 | Shal_0676 | -260 | 4.8 | TACTCCTTTAGGGATA |
| Shewanella piezotolerans WP3 | swp_4514 | -260 | 5.1 | TACCCCTTTAGGGATA |
| Shewanella sediminis HAW-EB3 | Ssed_4009 | -263 | 4.1 | TACTTCGTTCTAGGTA |
|
Position: -119
Score: 4.7 Sequence: TACCCCTTGCGAGGTA
Locus tag: Shal_0716
|
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| Shal_0716 | -119 | 4.7 | TACCCCTTGCGAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napD | ||||
| Ortholog function: Periplasmic nitrate reductase component NapD | ||||
| Shewanella oneidensis MR-1 | SO0849 | -119 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3147 | -116 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_0796 | -116 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp ANA-3 | Shewana3_3429 | -118 | 4.8 | TACCTCTTGCGAGGTA |
| Shewanella sp MR-4 | Shewmr4_0705 | -118 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp MR-7 | Shewmr7_3317 | -118 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella baltica OS155 | Sbal_3510 | -119 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella amazonensis SB2B | Sama_2982 | -105 | 4.8 | TACCTCCTAGTGGGTA |
| Shewanella loihica PV-4 | Shew_3205 | -123 | 4.9 | TACCTCTCAAGAGGTA |
| Shewanella pealeana ATCC 700345 | Spea_0624 | -118 | 4.9 | TACCCCTTGTGAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0716 | -119 | 4.7 | TACCCCTTGCGAGGTA |
| Shewanella piezotolerans WP3 | swp_4456 | -111 | 4.9 | TACCCCTTGTGAGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_3956 | -132 | 4.7 | TACCTCTTGTTGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_4109 | -124 | 5 | TACCCCTTACTAGGTA |
|
Position: -101
Score: 4.3 Sequence: TACCTCGAATTGAGTA
Locus tag: Shal_0776
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| Shal_0776 | -101 | 4.3 | TACCTCGAATTGAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fccA | ||||
| Ortholog function: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) | ||||
| Shewanella oneidensis MR-1 | SO0970 | -43 | 4.5 | TATCCCTTATTAAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0905 | -42 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp W3-18-1 | Sputw3181_3267 | -42 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp ANA-3 | Shewana3_3318 | -43 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp MR-4 | Shewmr4_0808 | -43 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp MR-7 | Shewmr7_3215 | -43 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella baltica OS155 | Sbal_0859 | -42 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3690 | -313 | 4.6 | TACCTCTTTATAACTA |
| Shewanella amazonensis SB2B | Sama_0611 | -35 | 5.2 | TACCTCTTTATAAGTA |
| Shewanella loihica PV-4 | Shew_3112 | -268 | 4.5 | TACCTCTTTGTGATTA |
| Shewanella pealeana ATCC 700345 | Spea_0722 | -101 | 4.5 | TACCTCAAAGTGAGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0776 | -101 | 4.3 | TACCTCGAATTGAGTA |
|
Position: -159
Score: 4.7 Sequence: TACCTCCAACGAGGTA
Locus tag: Shal_0885
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| Shal_0885 | -159 | 4.7 | TACCTCCAACGAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narQ | ||||
| Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) | ||||
| Shewanella oneidensis MR-1 | SO3981 | -199 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0684 | -162 | 5.2 | TACCTCTTAGGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_3487 | -162 | 5.2 | TACCTCTTAGGAGGTA |
| Shewanella sp ANA-3 | Shewana3_0657 | -163 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella sp MR-4 | Shewmr4_0658 | -164 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella sp MR-7 | Shewmr7_3364 | -164 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella baltica OS155 | Sbal_0793 | -146 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0621 | -188 | 5.1 | TACCCCTTATGGGGTA |
| Shewanella amazonensis SB2B | Sama_0647 | -160 | 4.9 | TACCCATTAAGTGGTA |
| Shewanella loihica PV-4 | Shew_0843 | -161 | 5.1 | TACCCCTTATGGGGTA |
| Shewanella pealeana ATCC 700345 | Spea_0830 | -157 | 5 | TACCTCCTATGAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0885 | -159 | 4.7 | TACCTCCAACGAGGTA |
| Shewanella piezotolerans WP3 | swp_3960 | -263 | 5.1 | TACCCCTTATGGGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0930 | -161 | 4.9 | TACCCCTAAGGGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_0971 | -160 | 5.2 | TACCCCTTATGAGGTA |
|
Position: -98
Score: 4.7 Sequence: TACCTCGTTGGAGGTA
Locus tag: Shal_0886
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| Shal_0886 | -98 | 4.7 | TACCTCGTTGGAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) | ||||
| Shewanella oneidensis MR-1 | SO3980 | -95 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0685 | -95 | 5.2 | TACCTCCTAAGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_3486 | -95 | 5.2 | TACCTCCTAAGAGGTA |
| Shewanella sp ANA-3 | Shewana3_0658 | -77 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella sp MR-4 | Shewmr4_0659 | -77 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella sp MR-7 | Shewmr7_3363 | -77 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella baltica OS155 | Sbal_0794 | -95 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0622 | -111 | 5 | TACCCCATAAGGGGTA |
| Shewanella amazonensis SB2B | Sama_0648 | -101 | 5 | TACCACTTAATGGGTA |
| Shewanella loihica PV-4 | Shew_0844 | -102 | 5 | TACCCCATAAGGGGTA |
| Shewanella pealeana ATCC 700345 | Spea_0831 | -101 | 4.9 | TACCTCATAGGAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0886 | -98 | 4.7 | TACCTCGTTGGAGGTA |
| Shewanella piezotolerans WP3 | swp_3958 | -96 | 5 | TACCCCATAAGGGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0931 | -100 | 5 | TACCCCCTTAGGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_0972 | -100 | 5 | TACCTCATAAGGGGTA |
|
Position: -153
Score: 4.6 Sequence: TACCTATAAAGATATA
Locus tag: Shal_1261
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| Shal_1261 | -153 | 4.6 | TACCTATAAAGATATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nnrS2 | ||||
| Ortholog function: NnrS protein involved in response to NO | ||||
| Shewanella loihica PV-4 | Shew_0504 | -177 | 4.4 | TGCCTATAAAGAGGTA |
| Shewanella pealeana ATCC 700345 | Spea_1227 | -155 | 4.4 | TACTCATTAAGATATA |
| Shewanella halifaxensis HAW-EB4 | Shal_1261 | -153 | 4.6 | TACCTATAAAGATATA |
| Shewanella piezotolerans WP3 | swp_3404 | -158 | 4.5 | TACCTACAAAGGAATA |
|
Position: -182
Score: 5.1 Sequence: TACCCCTAAAGAAATA
Locus tag: Shal_2783
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| Shal_2783 | -182 | 5.1 | TACCCCTAAAGAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omcA | ||||
| Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_2783 | -182 | 5.1 | TACCCCTAAAGAAATA |
| Shewanella piezotolerans WP3 | swp_3277 | -184 | 5.1 | TACCCCTAAAGAAATA |
|
Position: -194
Score: 5.2 Sequence: TACCTCTTTAGAAATA
Locus tag: Shal_2784
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| Shal_2784 | -194 | 5.2 | TACCTCTTTAGAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrC | ||||
| Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC | ||||
| Shewanella oneidensis MR-1 | SO1778 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella putrefaciens CN-32 | Sputcn32_1478 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp W3-18-1 | Sputw3181_2623 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp ANA-3 | Shewana3_2676 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp MR-4 | Shewmr4_2510 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp MR-7 | Shewmr7_2578 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella baltica OS155 | Sbal_1589 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2637 | -178 | 4.9 | TACCTCTTTATTAATA |
| Shewanella amazonensis SB2B | Sama_1208 | -192 | 4.9 | TACCCCTTTTGAAATA |
| -133 | 5 | TACCCCCTATGAGGTA | ||
| Shewanella loihica PV-4 | Shew_2525 | -193 | 5.2 | TACCCCTTTAGAAATA |
| Shewanella pealeana ATCC 700345 | Spea_2698 | -195 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella halifaxensis HAW-EB4 | Shal_2784 | -194 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella piezotolerans WP3 | swp_3278 | -193 | 5.1 | TACCTCTTTATAAATA |
| Shewanella sediminis HAW-EB3 | Ssed_1525 | -205 | 5 | TACCCCTTTATAAATA |
| Shewanella woodyi ATCC 51908 | Swoo_3125 | -218 | 5 | TACCCCTTTATAAATA |
|
Position: -69
Score: 4.3 Sequence: TACCCCCTTCGATATA
Locus tag: Shal_2928
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| Shal_2928 | -69 | 4.3 | TACCCCCTTCGATATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dmsE | ||||
| Ortholog function: Periplasmic decaheme cytochrome c, DsmE | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_2928 | -69 | 4.3 | TACCCCCTTCGATATA |
| Shewanella piezotolerans WP3 | swp_3461 | -34 | 4.3 | TACCCCCTTCGATATA |
|
Position: -151
Score: 4.6 Sequence: TACCTCTAAATCGGTA
Locus tag: Shal_3305
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| Shal_3305 | -151 | 4.6 | TACCTCTAAATCGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Shew_2655 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella loihica PV-4 | Shew_2655 | -166 | 5 | TACCACTTTAGAGATA |
| -152 | 4.3 | TACCTCTAATTCAGTA | ||
| Shewanella pealeana ATCC 700345 | Spea_3233 | -165 | 4.5 | TACCTACTTGTAGGTA |
| -151 | 4.4 | TATCCCTAAATTAGTA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3305 | -165 | 4.3 | TACCTATTTGTGTGTA |
| -151 | 4.6 | TACCTCTAAATCGGTA | ||
| Shewanella piezotolerans WP3 | swp_1107 | -165 | 5 | TACCCATTTATAGGTA |
| -151 | 4.9 | TACCTCTAAATTAGTA | ||
| Shewanella sediminis HAW-EB3 | Ssed_3185 | -176 | 4.6 | TACTACTTTAGGAGTA |
| -162 | 5 | TACCTCCTTATAAGTA | ||
| Shewanella woodyi ATCC 51908 | Swoo_3303 | -164 | 5 | TACCACTTTATAGGTA |
| -150 | 4.8 | TACCACTTAATTAGTA | ||
|
Position: -204
Score: 4.1 Sequence: TACTTCATTGTTGATA
Position: -105
Score: 4 Sequence: TATCGCTAATTAGGTA
Locus tag: Shal_3447
|
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| Shal_3447 | -204 | 4.1 | TACTTCATTGTTGATA | |
| -105 | 4 | TATCGCTAATTAGGTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3058 | ||||
| Ortholog function: Flavocytochrome c, flavin subunit | ||||
| Shewanella oneidensis MR-1 | SO3058 | -77 | 4.3 | TACCTCCTTTTAGGTG |
| Shewanella putrefaciens CN-32 | Sputcn32_2432 | -77 | 4.5 | TACCTCTTTTTAGGTG |
| Shewanella sp W3-18-1 | Sputw3181_1576 | -77 | 4.5 | TACCTCTTTTTAGGTG |
| Shewanella sp ANA-3 | Shewana3_1489 | -77 | 4.5 | TACCTCTTTTTAGGTG |
| Shewanella loihica PV-4 | Shew_2281 | -107 | 3.8 | CCCCTCTTTTTAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3447 | -105 | 4 | TATCGCTAATTAGGTA |
|
Position: -109
Score: 4.7 Sequence: TATCTCTTTAGTGGTA
Locus tag: Shal_3689
|
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| Shal_3689 | -109 | 4.7 | TATCTCTTTAGTGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Spea_3600 | ||||
| Ortholog function: Predicted deca-heme c-type cytochrome | ||||
| Shewanella pealeana ATCC 700345 | Spea_3600 | -109 | 4.6 | TATCTCTTTAGTAGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3689 | -109 | 4.7 | TATCTCTTTAGTGGTA |
| Shewanella piezotolerans WP3 | swp_0694 | -110 | 4.6 | TATCTCTTTAGTAGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0742 | -109 | 4.7 | TATCCCTTTATGGGTA |