Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NsrR regulog to Shewanella halifaxensis HAW-EB4

Reference regulog properties
Source regulog: NsrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella halifaxensis HAW-EB4
Orthologous TF(s) Shal_0039
Regulated genes 2
Built upon 51 sites [see more]
Predicted regulatory interactions in Shewanella halifaxensis HAW-EB4
Locus tag Position Score Sequence
Position: -13
Score: 5.6
Sequence: ACATGTAAATAATATGCATGA
Locus tag: Shal_1103
Shal_1103 -13 5.6 ACATGTAAATAATATGCATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella oneidensis MR-1 SO_1363 -42 5.2 ACATGTAAAAATAAAGCATGA
Shewanella putrefaciens CN-32 Sputcn32_1174 -42 5.5 ACATGCATAAATAAAGCATGA
Shewanella sp W3-18-1 Sputw3181_2990 -42 5.5 ACATGCATAAATAAAGCATGA
Shewanella sp ANA-3 Shewana3_3011 -42 5.4 ACATGCAAAAATAAAGCATGA
Shewanella sp MR-4 Shewmr4_2832 -42 5.4 ACATGCAAAAATAAAGCATGA
Shewanella sp MR-7 Shewmr7_2914 -42 5.4 ACATGCAAAAATAAAGCATGA
Shewanella baltica OS155 Sbal_1216 -42 5.2 ACATGTAAAAATAAAGCATGA
Shewanella frigidimarina NCIMB 400 Sfri_3609 -43 5 ACATGTAAAACTTATACATGA
Shewanella amazonensis SB2B Sama_0895 -83 4.5 TGCTGCTTTTTAAATGCAGCA
-40 5.5 ACATGCATAAATAAAGCATGA
Shewanella loihica PV-4 Shew_1069 -41 5.1 ACGTGCAAATAAAAAGCATGA
Shewanella pealeana ATCC 700345 Spea_1055 -43 5.6 ACATGTAAATAATATGCATGA
Shewanella halifaxensis HAW-EB4 Shal_1103 -13 5.6 ACATGTAAATAATATGCATGA
Shewanella piezotolerans WP3 swp_3762 41 5.9 AGATGCAAATTATATGCATGT
Shewanella sediminis HAW-EB3 Ssed_1165 -42 5.4 ACATGCAAATAAAAAGCATGA
Shewanella woodyi ATCC 51908 Swoo_1260 -42 5.4 ACATGCAAATAAAAAGCATGA
Position: -39
Score: 4.2
Sequence: AGGTGTATTTAAAATGTGTGT
Locus tag: Shal_1261
Shal_1261 -39 4.2 AGGTGTATTTAAAATGTGTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nnrS2
Ortholog function: NnrS protein involved in response to NO
Shewanella sp ANA-3 Shewana3_2362 -46 4.5 AAGTGCAATTATTATGAAGCT
Shewanella denitrificans OS217 Sden_2837 -110 4.4 ACAatCATtaTAaATaCcTGT
Shewanella frigidimarina NCIMB 400 Sfri_3037 -64 5.6 AGATTTATATATTATGCATGT
Shewanella pealeana ATCC 700345 Spea_1227 -35 4.8 AGCTGTATTTTAAATGCGTGT
Shewanella piezotolerans WP3 swp_3404 -39 4.2 AggTaCATtaAAaATaCcTGT